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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Rare Kidney Stone Consortium (RKSC) Resource Report Resource Website |
Rare Kidney Stone Consortium (RKSC) (RRID:SCR_014413) | RKSC | data or information resource, organization portal, portal | An organization of various participants and independent efforts representing four major diseases of hereditary nephrolithiasis. The Consortium facilitates cooperative exchange of information and resources among investigators, clinicians, patients, and researchers in order to improve care and outcomes for patients with rare stone diseases. The consortium promotes ready availability of diagnostic testing, pooling of clinical experiences, and availability of tissue banks in order to advance the science. | consortium, organization portal, hereditary nephrolithiasis, collaboration, rare kidney stone, rare stone disease |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
SCR_014413 | SciCrunch Registry | Rare Kidney Stone Consortium | 2026-11-07 12:01:28 | 0 | |||||||||
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Predicting Language Outcome and Recovery After Stroke (PLORAS) Resource Report Resource Website |
Predicting Language Outcome and Recovery After Stroke (PLORAS) (RRID:SCR_014498) | data or information resource, portal, project portal | A research project investigating the difficulties of recovering language after stroke (aphasia). The overall aim of the study is to give future stroke survivors accurate predictions of their aphasia recovery by creating clinical tools and discerning why some patients recover from aphasia better than others. | stroke, aphasia, language, project portal, aphasia recovery, language outcome, recovery prediction | Aphasia, Stroke | Wellcome Trust ; Stroke Association |
Public | SCR_014498 | SciCrunch Registry | 2026-11-07 12:01:42 | 0 | |||||||||
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LINCS Data Portal Resource Report Resource Website 10+ mentions |
LINCS Data Portal (RRID:SCR_014939) | data or information resource, portal | Portal which provides a unified interface for searching LINCS dataset packages and reagents. Users can use the portal to access datasets, small molecules, cells, genes, proteins and peptides, and antibodies. | portal, assay, lincs, kinome, dataset, small molecule, cell, gene, protein, peptide, and antibodies. |
is related to: LINCS Data Portal 2.0 has parent organization: University of Miami; Florida; USA is parent organization of: CycIF.org |
NIH Common Fund ; NHLBI 1U01HL111561; NHLBI 3U01HL111561-01S1; NHLBI 3U01HL111561-02S1; NHGRI U54HG006097; NHGRI U54 HG006093 |
Freely available | SCR_014939 | SciCrunch Registry | 2026-11-07 12:01:37 | 14 | |||||||||
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International Cell Line Authentication Committee Resource Report Resource Website 10+ mentions |
International Cell Line Authentication Committee (RRID:SCR_014414) | ICLAC | data or information resource, database, organization portal, portal | An independent committee established to improve visibility of cell lines and promote awareness and authentication testing to combat false or misidentified cell lines. It contains a databases of cross-contaminated or otherwise misidentified cell lines, as well as resources to familiarize users of cell lines and the problem of misidentification. Their Terms of Reference defines false or misidentified cell lines and other commonly used terms, as well as sets out the committee goals and ground rules. | organization portal, database, cell line, misidentified, false, database, cross contaminated, committee, authentication | SCR_014414 | SciCrunch Registry | International Cell Line Authentication Committee (ICLAC) | 2026-11-07 12:01:42 | 21 | ||||||||||
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ResearchConnection Resource Report Resource Website |
ResearchConnection (RRID:SCR_013965) | collaboration tool, service resource, software resource |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented June 21, 2018. A service resource and collaboration tool which connects academically affiliated researchers to undergraduate and graduate students. Researchers can advertise their lab and open positions as well as organize and manage applicants. Students can browse labs based on university and field(s) of interest and apply directly for lab positions or jobs. Universities must officially partner with ResearchConnection to advertise labs. |
service resource, collaboration tool, networking, lab, university |
uses: Boston University; Massachusetts; USA is used by: Boston University; Massachusetts; USA is listed by: Connected Researchers is related to: Connected Researchers |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_013965 | SciCrunch Registry | 2026-11-07 12:01:35 | 0 | ||||||||||
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Single Cell Portal Resource Report Resource Website 100+ mentions |
Single Cell Portal (RRID:SCR_014816) | SCP | data or information resource, portal | Portal specializes in visualizing and disseminating single cell data. Allows you to use natural language and faceted search to discover other scientists’ research and share your own findings. Each study includes information on cell types, singular or multiple gene expression, and spatial transcriptomics. Interactive visualizations allow to explore cell clusters and search for related genes. | Single cell data visualization, disseminating single cell data, single cell data, brain, RNA, rna seq, multiple gene expression, spatial transcriptomics, open science |
is used by: BRAIN Initiative is used by: BICCN is related to: BICCN Anatomy and Morphology Project is related to: Allen Institute for Brain Science has parent organization: Broad Institute has organization facet: Terra |
Free, Available for download, Freely available | https://portals.broadinstitute.org/single_cell?utf8=✓&search_terms=e+coli&order=&commit= | SCR_014816 | SciCrunch Registry | Single-Cell RNA-Seq Portal for Brain Research | 2026-11-07 12:01:34 | 366 | |||||||
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DRIFTER Resource Report Resource Website 10+ mentions |
DRIFTER (RRID:SCR_014937) | data processing software, image analysis software, software application, software resource | Model based Bayesian method for eliminating physiological noise from fMRI data. This algorithm uses image voxel analysis to isolate the cardiac and respiratory noise from the relevant data. | bayesian, physiological noise, fMRI, algorithm, cardiac, respiratory, image anaylsis, bold signal | has parent organization: Aalto University; Espoo; Finland | NICHD R01HD040712; NINDS R01NS037462; NINDS R01NS048279; NCR P41RR014075; NIMH R01MH083744; NIDCD R21DC010060; NIBIB R21EB007298; National Science Council Taiwan NSC 98-2320-B-002-004-MY3; National Science Council Taiwan NSC 100-2325-B-002-046; National Health Research Institute Taiwan NHRI-EX100-9715EC; Academy of Finland 124698; Academy of Finland 125349; Academy of Finland 127624; Academy of Finland 129670; Academy of Finland 218054; Academy of Finland 218248 |
PMID:22281675 | Free, Available for download, Acknowledgement requested | SCR_014937 | SciCrunch Registry | DRIFTER Toolbox | 2026-11-07 12:01:43 | 28 | |||||||
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Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) Resource Report Resource Website |
Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) (RRID:SCR_014384) | GRADE\\t | data or information resource, data set, resource | A comparative study that aims to determine which combination of two medications is best for glycemic control in Type 2 Diabetes, has the fewest side effects, and is the most beneficial for overall health. GRADE is a randomized clinical trial of participants diagnosed with type 2 diabetes within the past 10 years who are already on metformin. Participants will be randomly assigned to 1 of 4 commonly-used glucose-lowering drugs (glimepiride, sitagliptin, liraglutide, and basal insulin glargine), plus metformin, and will be followed for up to 7 years. | glycemic reduction, comparative study, type 2 diabetes, clinical trial, randomized, glimepiride, sitagliptin, liraglutide, and basal insulin glargine, metformin |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers |
Type 2 diaberes, Diabetes | NIDDK | Documents for prospective researchers on ancillary studies are available | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014384 | SciCrunch Registry | Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study | 2026-11-07 12:01:36 | 0 | |||||
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Janelia Workstation Resource Report Resource Website 1+ mentions |
Janelia Workstation (RRID:SCR_014302) | data processing software, image analysis software, software application, software resource | A discovery platform used to analyze and annotate imagery for individual projects, while assembling shared data resources. It was originally applied to Drosophila neuronal anatomy and neuroblast lineage analysis and is currently being extended to support mouse whole-brain projection tracing. The Workstation is both a pipeline management system that extracts entities from 3D imagery and a suite of tools that enable scientists to annotate large imagery datasets. A Entity-Attribute-Value (EAV) graph permits any element to be annotated by users with custom ontologies. By allowing any entity to have multiple parents, the graph can be re-arranged by each user without copying the underlying image data. | annotate, image analysis software, discovery platform, shared data resource, drosophila, mouse, pipeline management, 3d image, suite, software tools | SCR_014302 | SciCrunch Registry | 2026-11-07 12:01:27 | 3 | ||||||||||||
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Pannoramic Viewer Resource Report Resource Website 10+ mentions |
Pannoramic Viewer (RRID:SCR_014424) | data processing software, image analysis software, software application, software resource | Software tool as a digital virtual microscope for viewing and moving scanned histological slides and for making annotations and measurements on them. Used in digital pathology. Helps to simplify the areas of the pathology workflow where imaging, slide digitization, storage, archivation, visualization and analysis are performed. | microscope, image analysis, annotate image, image annotation, virtual microscope | Restricted | SCR_016296 | SCR_014424 | SciCrunch Registry | 2026-11-07 12:01:36 | 47 | ||||||||||
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Assisted Model Building with Energy Refinement (AMBER) Resource Report Resource Website 1000+ mentions |
Assisted Model Building with Energy Refinement (AMBER) (RRID:SCR_014230) | AMBER | simulation software, software application, software resource, standalone software | Software package of molecular simulation programs. It is distributed into AmberTools15 and Amber14. AmberTools15 is a software package which can carry out complete molecular dynamics simulations with either explicit water or generalized Born solvent models. It is distributed in source code format and must be compiled in order to be used. Amber14 builds on AmberTools15 by adding the pmemd program, which provides better performance on multiple CPUs and dramatic speed improvements on GPUs compared to sander (molecular dynamics). GPU info, manuals, and tutorials are available on the website. | molecular simulation, simulation software, software package, molecular dynamics, pmemed, sander, bio.tools |
is listed by: bio.tools is listed by: Debian |
Acknowledgement requested | biotools:amber | https://bio.tools/amber | SCR_014230 | SciCrunch Registry | Assisted Model Building with Energy Refinement | 2026-11-07 12:01:41 | 4081 | ||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology (RRID:SCR_015320) | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July,27,2022. Core facility that provides scientific and budgetary oversight for all CCEH activities. This includes training programs, high school summer internships, and and pilot and feasibility program for new projects. | cancer research, administrative support, budgetary oversight, training programs |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank is organization facet of: Hematology Centers |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015922 | SCR_015320 | SciCrunch Registry | 2026-11-07 12:01:35 | 0 | |||||||
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Small-world Network Analysis and Partitioning Resource Report Resource Website |
Small-world Network Analysis and Partitioning (RRID:SCR_013662) | data processing software, software application, software resource | SNAP (Small-world Network Analysis and Partitioning) is an extensible parallel framework for exploratory analysis and partitioning of large-scale networks. SNAP is implemented in C, uses OpenMP primitives for parallelization, and targets sequential, multicore, and symmetric multiprocessor platforms. Our intent with SNAP is to provide a simple and intuitive interface for network analysis and application design, hiding the parallel programming complexity from the user. In addition to path-based, centrality, and community identification queries on large-scale graphs, we support commonly-used preprocessing kernels and quantitative measures that help understand the global network topology. The latest version of SNAP (0.4) was released in August 2010. Sponsors: This work was supported in part by NSF Grants CAREER CCF-0611589, NSF DBI-0420513, ITR EF/BIO 03-31654, IBM Faculty Fellowship and Microsoft Research grants, NASA grant NP-2005-07-375-HQ, and DARPA Contract NBCH30390004. Keywords: network, analysis, software, graph, traversal, betweenness centrality, community, identification, multicore, | has parent organization: Georgia Institute of Technology; Georgia; USA | nif-0000-00425 | SCR_013662 | SciCrunch Registry | SNAP | 2026-11-07 12:01:35 | 0 | ||||||||||
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University of Michigan Center for Gastrointestinal Research Resource Report Resource Website |
University of Michigan Center for Gastrointestinal Research (RRID:SCR_015605) | UMCGR | data or information resource, organization portal, portal | Center whose goal is to investigate signal transduction mechanisms regulating homeostasis and GI disorders. Their approach includes studies on genetics and gene regulation, cellular signaling pathways, receptors and ion channels. | UMCGR, gastrointestinal research, GI functions, homeostasis, cellular signaling pathway, gene regulation |
is listed by: NIDDK Information Network (dkNET) is parent organization of: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core is parent organization of: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core is parent organization of: University of Michigan Center for Gastrointestinal Research Molecular Biology Core is parent organization of: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core has organization facet: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core has organization facet: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core has organization facet: University of Michigan Center for Gastrointestinal Research Molecular Biology Core has organization facet: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core is organization facet of: Digestive Disease Centers |
digestive disease | NIDDK P30 DK034933 | Available to affiliated researchers | SCR_015605 | SciCrunch Registry | 2026-11-07 12:01:30 | 0 | |||||||
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NIH Metabolomics program Resource Report Resource Website |
NIH Metabolomics program (RRID:SCR_014634) | data or information resource, funding resource, portal | A US national program which supoorts the development of technologies in order to enhance the metabolomics field. It specifically increases the national metabolomics research capacity by supporting five core programs: Training in Metabolomics, Metabolomics Technology Development, Metabolomics Reference Standard Synthesis, Metabolomics Data Sharing and International Collaboration, and Comprehensive Metabolomics Resource Cores. | metabolomics, national program, training, technology, data sharing, collaboration, standard, resource core, portal, funding resource | is listed by: Metabolomics Workbench | Available to the scientific community | SCR_014634 | SciCrunch Registry | National Institutes of Health (NIH) Common Fund Metabolomics, NIH Common Fund Metabolomics program | 2026-11-07 12:01:42 | 0 | |||||||||
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PALEOMIX Resource Report Resource Website 50+ mentions |
PALEOMIX (RRID:SCR_015057) | data processing software, software application, software resource, software toolkit | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software toolkit for the processing of ancient and modern HTS data. PALEOMIX also aids in metagenomic analysis of the extracts from the HTS processing. | hts data, high-throughput sequencing, ancient dna, adna, bio.tools |
is listed by: Debian is listed by: bio.tools |
PMID:24722405 DOI:10.1038/nprot.2014.063 |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:paleomix, OMICS_03749 | https://bio.tools/paleomix, https://sources.debian.org/src/paleomix/ | SCR_015057 | SciCrunch Registry | 2026-11-07 12:01:43 | 66 | |||||||
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BiofilmQuant Resource Report Resource Website |
BiofilmQuant (RRID:SCR_014088) | data processing software, image analysis software, software application, software resource | A semi-automated software tool for dental plaque biofilm quantification in quantitative light-induced fluorescence (QLF) images. | image analysis software, volumetric analysis, biofilm, dental plaque, quantification, qlf image | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available for download, Acknowledgement requested | SCR_014088 | SciCrunch Registry | 2026-11-07 12:01:33 | 0 | ||||||||||
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7T Structural MRI scans ATAG Resource Report Resource Website 1+ mentions |
7T Structural MRI scans ATAG (RRID:SCR_014084) | atlas, data or information resource, data set | Data sets from the atlasing of the basal ganglia (ATAG) consortium, which provides ultra-high resolution 7Tesla (T) magnetic resonance imaging (MRI) scans from young, middle-aged, and elderly participants. They include whole-brain and reduced field-of-view MP2RAGE and T2 scans with ultra-high resolution at a sub millimeter scale. The data can be used to develop new algorithms that help building new high-resolution atlases both in the basic and clinical neurosciences. They can also be used to inform the exact positioning of deep-brain electrodes relevant in patients with Parkinsons disease and neuropsychiatric diseases. | 7t mri, data set, atlas, basal ganglia, structural mri scan, brain, human brain, probabilistic atlas |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Amsterdam; Amsterdam; Netherlands |
Available for download | SCR_014084 | SciCrunch Registry | 2026-11-07 12:01:35 | 7 | ||||||||||
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Operational Criteria Resource Report Resource Website 10+ mentions |
Operational Criteria (RRID:SCR_013359) | data or information resource, organization portal, portal | The operational criteria OPCRIT checklist for psychotic and affective illness has been designed to facilitate a polydiagnostic approach to mental illness. The package is specifically for the needs of the researcher and is intended to be used by clinicians or investigators trained in clinical research. It is not recommended for use by raters without previous experience in psychopathology and psychiatric diagnosis. Click the Download link below to download Opcrit. This download is compressed zip file which will yield the actual installer files. Open WinopInstallerFiles.zip and when prompted extract the contents to a temporary location. One of the files extracted is Setup.exe. Run this setup file and follow the instructions to install the Opcrit. Depending on your system type and version of Windows, you may need to reboot your system once installation is complete. After installation, you will also need to download and run the installer for the october 2009 update (see below). | nif-0000-31494 | SCR_013359 | SciCrunch Registry | OPCRIT | 2026-11-07 12:01:35 | 37 | |||||||||||
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DOAF Resource Report Resource Website 1+ mentions |
DOAF (RRID:SCR_015666) | DOAF | data or information resource, database, portal, project portal | Project portal for a collaborative database aiming to provide a comprehensive annotation to human genome.It uses the computable, controlled vocabulary of Disease Ontology (DO) and NCBI Gene Reference Into Function (GeneRIF). | disease ontology, annotation, collaboration, collaborative project, java, perl, rubby |
uses: Human Disease Ontology is related to: NUgene Project is related to: Gene Ontology is related to: OBO has parent organization: Northwestern University; Illinois; USA |
NCRR 1R01RR025342; CTSA UL1RR025741 |
PMID:23251346 | Public, Available for download, Tutorial Available | SCR_015666 | SciCrunch Registry | Disease Ontology Annotation Framework, Disease Ontology Annotation Framework (DOAF) | 2026-11-07 12:01:30 | 1 |
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