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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Barbara A. Mikulski Archive for Space Telescopes Resource Report Resource Website 10+ mentions |
Barbara A. Mikulski Archive for Space Telescopes (RRID:SCR_023137) | data repository, service resource, storage service resource | Astronomical data archive focused on optical, ultraviolet, and near infrared. Used for maximizing scientific accessibility and productivity of astronomical data. MAST hosts data from over dozen missions like Webb, Hubble, TESS, Kepler, and in the future Roman. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17909, DOI:10.17616/R3K897, r3d100010403 | https://doi.org/10.17909, https://dx.doi.org/10.17909, http://doi.org/10.17616/R3K897, https://doi.org/10.17616/R3K897 | SCR_023137 | SciCrunch Registry | Barbara A. Mikulski Archive for Space Telescopes | 2026-11-07 12:01:08 | 19 | ||||||||
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Cancer Research and Management ACGT Master Ontology Resource Report Resource Website |
Cancer Research and Management ACGT Master Ontology (RRID:SCR_006953) | ACGT-MO | controlled vocabulary, data or information resource, ontology | Ontology to represent the domain of cancer research and management in a computationally tractable manner. | owl | is listed by: BioPortal | nlx_157351 | SCR_006953 | SciCrunch Registry | ACGT Master Ontology | 2026-11-07 12:01:02 | 0 | ||||||||
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ECO Resource Report Resource Website 10+ mentions |
ECO (RRID:SCR_002477) | ECO | controlled vocabulary, data or information resource, ontology | A controlled vocabulary that describes types of scientific evidence within the realm of biological research that can arise from laboratory experiments, computational methods, manual literature curation, and other means. Researchers can use these types of evidence to support assertions about research subjects that result from scientific research, such as scientific conclusions, gene annotations, or other statements of fact. ECO comprises two high-level classes, evidence and assertion method, where evidence is defined as a type of information that is used to support an assertion, and assertion method is defined as a means by which a statement is made about an entity. Together evidence and assertion method can be combined to describe both the support for an assertion and whether that assertion was made by a human being or a computer. However, ECO can not be used to make the assertion itself; for that, one would use another ontology, free text description, or other means. ECO was originally created around the year 2000 to support gene product annotation by the Gene Ontology. Today ECO is used by many groups concerned with provenance in scientific research. ECO is used in AmiGO 2 | evidence, assertion, assertion method, gene product, obo, evidence code, experiment, similarity, provenance |
is listed by: BioPortal is related to: AmiGO is related to: Gene Ontology has parent organization: University of Maryland School of Medicine; Maryland; USA has parent organization: Google Code |
NIGMS GM089636 | Free, Available for download, Freely available | nlx_155860 | http://code.google.com/p/evidenceontology/, http://bioportal.bioontology.org/ontologies/ECO | SCR_002477 | SciCrunch Registry | Evidence Codes Ontology, Evidence Ontology, evidenceontology, The Evidence Ontology | 2026-11-07 12:01:07 | 19 | |||||
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Medical image simulation Resource Report Resource Website 1+ mentions |
Medical image simulation (RRID:SCR_010355) | OntoVIP | controlled vocabulary, data or information resource, ontology | Ontology that describes the content of the models used in medical image simulation developed in the context of the Virtual Imaging Platform project (VIP), a french project aiming at sharing medical image simulation resources. This ontology can be used to annotate such models in order to highlight the different entities that are present in the 3D scene to be imaged, i.e. anatomical structures, pathological structures, foreign bodies, contrast agents etc. The model allows also to associate to these entities information about their physical qualities, which are used in the medical image simulation process (to mimick physical phenomena involved in CT, MR, US and PET imaging). This ontology partly relies on the OntoNeuroLOG ontology (ONL-DP ONL-MR-DA), as well as PATO, RadLex, FMA and ChEBI. | owl | is listed by: BioPortal | French National Research Agency ANR-09-COSI-03 | nlx_157472 | SCR_010355 | SciCrunch Registry | 2026-11-07 12:01:08 | 3 | ||||||||
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Mental State Assessment Resource Report Resource Website 1+ mentions |
Mental State Assessment (RRID:SCR_010357) | ONL-MSA | controlled vocabulary, data or information resource, ontology | Ontology that is a module of the OntoNeuroLOG ontology that covers the field of mental state assessments, i.e. instruments, instrument variables, assessments, and resulting scores, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a generic domain core ontology, that provides a general model of such entities and a general taxonomy of behavioural, neurosychological and neuroclinical instruments, that can be easily extended to model any particular kind of instrument. It also includes such extensions for 8 relatively standard instruments, namely: (1) the Beck-depression-inventory-(BDI-II), (2) the Expanded-Disability-Status-Scale, (3) the Controlled-oral-word-association-test, (4) the Free-and-Cued-Selective-Reminding-Test-with-Immediate-Recall-16-item-version-(The-Grober-and-Buschke-test), (5) the Mini-Mental-State, (6) the Stroop-color-and-word-test, (7) the Trail-making-test-(TMT), (8) the Wechsler-Adult-Intelligence-Scale-third-edition, (9) the Clinical-Dementia-Rating-scale, (10) the Category-verbal-fluency, (11) the Rey-Osterrieth-Complex-Figure-Test-(CFT). | owl neuroimaging, mri, mental state assessment | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157474 | SCR_010357 | SciCrunch Registry | MSA ontology | 2026-11-07 12:00:55 | 1 | |||||||
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3Omics Resource Report Resource Website 1+ mentions |
3Omics (RRID:SCR_014678) | software resource, web application | THIS RESOURCE IS NO LONGER IN SERVICE, documented October 19, 2016. A web tool for visualizing and integrating multiple inter- or intra-transcriptomic, proteomic, and metabolomic human data. 3Omics generates inter-omic correlation networks to visualize relationships in data with respect to time or experimental conditions for transcripts, proteins and metabolites. | metabolomics, metabolomics tool, transcriptomics, proteomics, inter-omic, correlation, network, relationship visualization | is listed by: Metabolomics Workbench | PMID:23875761 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014678 | SciCrunch Registry | 2026-11-07 12:01:03 | 1 | |||||||||
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Metagenome Sample Vocabulary Resource Report Resource Website |
Metagenome Sample Vocabulary (RRID:SCR_010358) | MSV | controlled vocabulary, data or information resource, ontology | An ontology for metagenome sample metadata that mainly defines predicates. | owl | is listed by: BioPortal | nlx_157475 | SCR_010358 | SciCrunch Registry | 2026-11-07 12:01:02 | 0 | |||||||||
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Mosquito Gross Anatomy Ontology Resource Report Resource Website |
Mosquito Gross Anatomy Ontology (RRID:SCR_003839) | TGMA | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of the anatomy of mosquitoes. | obo | is listed by: BioPortal | nlx_157485 | SCR_003839 | SciCrunch Registry | 2026-11-07 12:00:54 | 0 | |||||||||
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CPTAC Proteomics Pipeline Infrastructure Ontology Resource Report Resource Website |
CPTAC Proteomics Pipeline Infrastructure Ontology (RRID:SCR_006945) | CPTAC | controlled vocabulary, data or information resource, ontology | A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project | owl | is listed by: BioPortal | nlx_157349 | SCR_006945 | SciCrunch Registry | 2026-11-07 12:00:55 | 0 | |||||||||
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PACEMweb Resource Report Resource Website |
PACEMweb (RRID:SCR_023083) | software resource, web application | Web tool for aggregate consumer exposure assessment. Model is based on realistic product usage information obtained from surveys. Information on usage, frequency and amount of personal care products and household cleaning products in various European countries is included. | aggregate consumer exposure assessment, product usage from surveys, personal care products, household cleaning products, European countries | Dutch Ministry of Health ; Welfare and Sport ; Long Range Science Strategy Program of Cosmetics Europe |
PMID:36522445 | Free, Freely available | SCR_023083 | SciCrunch Registry | Probabilistic Aggregate Consumer Exposure Model Web | 2026-11-07 12:00:42 | 0 | ||||||||
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MouseLight Neuron Browser Resource Report Resource Website 10+ mentions |
MouseLight Neuron Browser (RRID:SCR_016669) | software resource, web application | Interactive web platform for anyone to explore, search, filter and visualize the single neuron reconstructions. | explore, search, filter, visualize, single, neuron, reconstruction, mouse, brain |
has parent organization: Janelia Research is provided by: MouseLight Project |
Free, Freely available, Tutorial available, Acknowledgement required | http://mouselight.janelia.org/ | SCR_016669 | SciCrunch Registry | Neuron Browser, NeuronBrowser, MouseLight Neuron Browser | 2026-11-07 12:01:09 | 31 | ||||||||
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FAIR Data Station Resource Report Resource Website 1+ mentions |
FAIR Data Station (RRID:SCR_023239) | FAIR-DS | data or information resource, portal, project portal, software resource, web application | Software metadata ingestion platform that helps to improve quality of metadata. Station allows users to record meta-data according to minimum information standards thereby ensuring FAIR scientific data management from the start. | FAIR, FAIR data, metadata quality improvement, record meta-data, minimum information standards, FAIR scientific data management, | Dutch national funding agency NWO 184.035.007 | Free, Freely available | http://data.m-unlock.nl, http://fairbydesign.nl, http://gitlab.com/m-unlock/fairds | SCR_023239 | SciCrunch Registry | 2026-11-07 12:01:10 | 1 | ||||||||
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Piirus Resource Report Resource Website |
Piirus (RRID:SCR_013964) | collaboration tool, data or information resource, database, software resource | A database and collaboration tool which allows researchers to make contacts or find collaborators within their field or from a different discipline. Users can create a profile detailing their collaboration interests, research areas, and methodologies as well as add links to external sites such as LinkedIn and Academia.edu. Piirus takes the information from users' profiles to suggest researchers with whom they may be interested in collaborating with. Users can also search for users with particular interests, expertise, or techniques. | collaboration tool, connect, networking |
is listed by: Connected Researchers is related to: Connected Researchers is related to: Boston University; Massachusetts; USA has parent organization: University of Warwick; Coventry; United Kingdom |
Available to the research community | SCR_013964 | SciCrunch Registry | 2026-11-07 12:01:09 | 0 | ||||||||||
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loom-viewer Resource Report Resource Website |
loom-viewer (RRID:SCR_016683) | data processing software, data visualization software, software application, software resource | Software tool for sharing, browsing and visualizing single-cell data stored in the Loom file format. | sharing, browsing, visualizing, single, cell, data, stored, Loom, file, format | works with: LoomPy | Free, Available for download, Freely available | SCR_016683 | SciCrunch Registry | 2026-11-07 12:00:42 | 0 | ||||||||||
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loadGffToGe_db for custom genome Resource Report Resource Website 1+ mentions |
loadGffToGe_db for custom genome (RRID:SCR_015997) | data processing software, data visualization software, software application, software resource | One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide. loadGffToGe_db for custom genome software loads GFF files of custom genomes to a database for Genome Explorer. It allows the user to browse the results through the GE. | Next Generation Sequencers, Next Generation Sequencers data, Next Generation Sequencers data analysis and visualization, | Ministry of Education ; Culture ; Sports ; Science and Technology ; Japan |
Restricted | https://cell-innovation.nig.ac.jp/maser/index_en.html | SCR_015997 | SciCrunch Registry | Management and Analysis System for Enormous Reads: loadGffToGe_db for custom genome | 2026-11-07 12:01:04 | 1 | ||||||||
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MRIcron Resource Report Resource Website 1000+ mentions |
MRIcron (RRID:SCR_002403) | MRIcron | data processing software, data visualization software, software application, software resource | Software tool as a cross-platform NIfTI format image viewer. Used for viewing and exporting of brain images. MRIcroGL is a variant of MRIcron. | NIfTI, format, image, viewer, exporting, brain, image, processing, data, bio.tools |
is used by: XFSL: An FSL toolbox is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: neurodebian is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: Colour maps for brain imaging has parent organization: University of South Carolina; South Carolina; USA |
PMID:17583985 PMID:11568431 |
BSD License | biotools:MRIcron, nif-0000-00122 | https://sources.debian.org/src/mricron/, http://www.mccauslandcenter.sc.edu/mricro/, http://www.nitrc.org/projects/mricron, http://neuro.debian.net/pkgs/mricron.html, https://bio.tools/MRIcron | SCR_002403 | SciCrunch Registry | mricron - magnetic resonance image conversion viewing and analysis | 2026-11-07 12:00:57 | 2312 | |||||
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Google Earth Engine Resource Report Resource Website 50+ mentions |
Google Earth Engine (RRID:SCR_023224) | GEE | software resource, web application | Web application as public data catalog, compute infrastructure, geospatial APIs and interactive app server. Geospatial processing service. | Geospatial processing service, geospatial APIs and interactive app server, geospatial | Free, Freely available | https://github.com/google/earthengine-api | SCR_023224 | SciCrunch Registry | Earth Engine | 2026-11-07 12:00:44 | 74 | ||||||||
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University of Chicago Digestive Diseases Research Core Center Resource Report Resource Website 1+ mentions |
University of Chicago Digestive Diseases Research Core Center (RRID:SCR_015601) | DDRCC | data or information resource, organization portal, portal, training resource | Center whose goals include fostering collaboration among basic and clinical investigators, facilitating the use of new technologies in the study of treatment of digestive diseases, and providing education and training for improved treatment and diagnosis. | DDRCC, digestive disease, uchicago |
is listed by: NIDDK Information Network (dkNET) is parent organization of: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Administrative Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core has organization facet: University of Chicago Digestive Diseases Research Core Center Administrative Core has organization facet: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core has organization facet: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core has organization facet: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core has organization facet: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core is organization facet of: Digestive Disease Centers |
digestive disease | NIDDK P30 DK042086 | Available to the research community | SCR_015601 | SciCrunch Registry | 2026-11-07 12:00:58 | 1 | |||||||
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MetaSearch Resource Report Resource Website 1+ mentions |
MetaSearch (RRID:SCR_014751) | software resource, web application | Web application search tool intended to help users find MRI data shared publicly on the Web, particularly from projects organized under the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI). Users can perform queries visually to select a cohort of participants with brain imaging data based on their demographics and phenotypic information and then link out to imaging measures. | web application, mri, mri data, open mri data, search tool, brain imaging data |
uses: 1000 Functional Connectomes Project is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) works with: BrainBox is hosted by: Open Neuroimaging Laboratory |
Public | https://github.com/OpenNeuroLab/metasearch https://www.nitrc.org/projects/metasearch/ | SCR_014751 | SciCrunch Registry | 2026-11-07 12:00:57 | 3 | |||||||||
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Diabetes Prevention Program Resource Report Resource Website |
Diabetes Prevention Program (RRID:SCR_001501) | DPP | bibliography, clinical trial, data or information resource, database, resource | Multicenter clinical research study aimed at discovering whether modest weight loss through dietary changes and increased physical activity or treatment with the oral diabetes drug metformin (Glucophage) could prevent or delay the onset of type 2 diabetes in study participants. At the beginning of the DPP, all 3,234 study participants were overweight and had blood glucose levels higher than normal but not high enough for a diagnosis of diabetesa condition called prediabetes. In addition, 45 percent of the participants were from minority groups-African American, Alaska Native, American Indian, Asian American, Hispanic/Latino, or Pacific Islander-at increased risk of developing diabetes. The DPP found that participants who lost a modest amount of weight through dietary changes and increased physical activity sharply reduced their chances of developing diabetes. Taking metformin also reduced risk, although less dramatically. In the DPP, participants from 27 clinical centers around the United States were randomly divided into different treatment groups. The first group, called the lifestyle intervention group, received intensive training in diet, physical activity, and behavior modification. By eating less fat and fewer calories and exercising for a total of 150 minutes a week, they aimed to lose 7 percent of their body weight and maintain that loss. The second group took 850 mg of metformin twice a day. The third group received placebo pills instead of metformin. The metformin and placebo groups also received information about diet and exercise but no intensive motivational counseling. A fourth group was treated with the drug troglitazone (Rezulin), but this part of the study was discontinued after researchers discovered that troglitazone can cause serious liver damage. The participants in this group were followed but not included as one of the intervention groups. In the years since the DPP was completed, further analyses of DPP data continue to yield important insights into the value of lifestyle changes in helping people prevent type 2 diabetes and associated conditions. For example, one analysis confirmed that DPP participants carrying two copies of a gene variant, or mutation, that significantly increased their risk of developing diabetes benefited from lifestyle changes as much as or more than those without the gene variant. Another analysis found that weight loss was the main predictor of reduced risk for developing diabetes in DPP lifestyle intervention group participants. The authors concluded that diabetes risk reduction efforts should focus on weight loss, which is helped by increased exercise. | prevention, lifestyle, metformin, intervention, dietary change, physical activity, minority, african-american, alaska native, american indian, asian american, hispanic, latino, pacific islander, male, female, slide, adult human, late adult human, dna |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository has parent organization: George Washington University; Washington D.C.; USA |
Type 2 diabetes, Prediabetes, Overweight, Non-insulin-dependent diabetes mellitus | NIDDK 1ZIADK075078-04 | Free, Freely available | nlx_152799 | SCR_001501 | SciCrunch Registry | 2026-11-07 12:01:09 | 0 |
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