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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Pi-based Remote Acquisition Technology for Motion Capture project Resource Report Resource Website |
Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) | PiRATeMC | data or information resource, instrument resource, portal, project portal | Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub. | OpenBehavior, Instrument, behavior measurement, video analysis, realtime recording and analysis, video recording system, acquiring video data, open source recording system |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture |
DOI:10.1101/2021.07.23.453577 | Free, Freely available | SCR_022325 | SciCrunch Registry | Pi-based Remote Acquisition Technology for Motion Capture | 2026-11-07 12:00:56 | 0 | |||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | data or information resource, instrument resource, portal, project portal | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | SciCrunch Registry | Raspberry Pi based auditory stimulus generator project | 2026-11-07 12:00:57 | 0 | |||||||
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Meta Essentials Resource Report Resource Website 10+ mentions |
Meta Essentials (RRID:SCR_022464) | data analysis software, data processing software, software application, software resource | Software tool for meta analysis. Facilitates integration and synthesis of effect sizes from different studies. Consists of set of workbooks designed for Microsoft Excel that automatically produces all required statistics, tables, figures, and more. | meta analysis, relationship between independent and dependent variable analysis | DOI:10.1002/jrsm.1260 | Free, Available for download, Freely available | SCR_022464 | SciCrunch Registry | Meta-Essentials | 2026-11-07 12:00:58 | 35 | |||||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | data processing software, data visualization software, software application, software resource | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | SciCrunch Registry | 2026-11-07 12:00:56 | 0 | ||||||||||
|
Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | data analysis software, data processing software, software application, software resource | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | SciCrunch Registry | ABA project | 2026-11-07 12:00:56 | 0 | ||||||
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FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | data analysis software, data processing software, data visualization software, software application, software resource | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab, https://flybrainlab.fruitflybrain.org/ | SCR_022337 | SciCrunch Registry | 2026-11-07 12:00:46 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | data analysis software, data processing software, software application, software resource | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | SciCrunch Registry | 2026-11-07 12:00:56 | 0 | ||||||||
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BD Biosciences: FACSymphony A5 SE Cell Analyzer Resource Report Resource Website 1+ mentions |
BD Biosciences: FACSymphony A5 SE Cell Analyzer (RRID:SCR_022674) | instrument resource | Flow cytometer gains full visible spectrum coverage to collect all light emitted without need for filter changes, increasing dye flexibility and number of simultaneous colors. Uses unmix spectral data live in BD FACSDiva Software while retaining familiar compensation workflow. May improve resolution of difficult cells and populations using autofluorescence unmixing. | Flow cytometer, cell analyzer, unmix spectral data live, difficult cells resolution, autofluorescence unmixing, instrument, equipment, USEDit | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022674.pdf | Model_Number_FACSymphony_A5_SE | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/BD-FACSymphony-A5-SE-Brochure1.pdf | SCR_022674 | SciCrunch Registry | BD FACSymphony™ A5 SE Cell Analyzer, BD FACSymphony A5 SE | 2026-11-07 12:01:01 | 5 | |||||||
|
SciReq: flexiVent system Resource Report Resource Website 1+ mentions |
SciReq: flexiVent system (RRID:SCR_022673) | instrument resource | System for small animal pulmonary function. Used for in vivo respiratory mechanics measurements. Goes beyond traditional resistance and compliance mechanics of pulmonary ventilation, and captures details about mechanical properties of conducting airways, terminal airways and parenchyma. Achieves sensitivity and reproducibility by precisely controlling experimental conditions. | USEDit, instrument, equipment, SCIREQ, animal pulmonary function, in vivo respiratory mechanics measurements, pulmonary ventilation | is listed by: USEDit | Restricted | SCR_022673 | SciCrunch Registry | SCIREQ flexiVent system | 2026-11-07 12:00:58 | 4 | |||||||||
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OpenSMOG Resource Report Resource Website |
OpenSMOG (RRID:SCR_022551) | software library, software resource, software toolkit | Software library that enables use of structure based SMOG models of biopolymers with OpenMM. | structure based SMOG models, biopolymers models, OpenMM |
is related to: SMOG 2 is related to: SMOG |
DOI:10.1002/pro.4209 | Free, Available for download, Freely available | SCR_022551 | SciCrunch Registry | 2026-11-07 12:00:57 | 0 | |||||||||
|
Modular LED Displays project Resource Report Resource Website |
Modular LED Displays project (RRID:SCR_022704) | data or information resource, instrument resource, portal, project portal | Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. | Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments |
is listed by: OpenBehavior has parent organization: Howard Hughes Medical Institute |
DOI:10.1101/2022.08.02.502550 | Free, Freely available | https://reiserlab.github.io/Modular-LED-Display/, https://github.com/reiserlab/Modular-LED-Display | SCR_022704 | SciCrunch Registry | Modular LED Displays | 2026-11-07 12:00:50 | 0 | |||||||
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TABNET Resource Report Resource Website 50+ mentions |
TABNET (RRID:SCR_022668) | data or information resource | Portal to find all informations about epidemiology regarding public and suplementary health in Brazil. | epidemiology, public and suplementary health in Brazil, Brazil | Free, Freely available | SCR_022668 | SciCrunch Registry | 2026-11-07 12:01:01 | 67 | |||||||||||
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BioMerieux: NucliSens easyMAG system Resource Report Resource Website 1+ mentions |
BioMerieux: NucliSens easyMAG system (RRID:SCR_022666) | instrument resource | System for total nucleic acid extraction from variety of sample types and volumes. System automates enhanced magnetic silica version of bioMérieux’s proprietary BOOM technology gold standard for universal extraction of RNA and DNA.Clinical use includes nucleic acid extraction in front of molecular infectious disease assays, molecular oncology assays, molecular genetics assays. | BioMérieux, total nucleic acid extraction, extraction of RNA and DNA, USEDit, instrument, equipment | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022666.pdf | SCR_022666 | SciCrunch Registry | BioMérieux NucliSens easyMAG, BioMérieux NucliSens R easyMAG | 2026-11-07 12:00:58 | 5 | |||||||||
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PyFRAP Resource Report Resource Website 1+ mentions |
PyFRAP (RRID:SCR_022665) | data analysis software, data processing software, software application, software resource | Software Python package for FRAP analysis. Simulation based analysis software that makes use of PDE simulations to analyze FRAP experiments in 3D geometries. Used to assess molecular diffusion. | Fluorescence recovery after photobleaching, analyze FRAP experiments in 3D geometries, assess molecular diffusion, | Free, Available for download, Freely available | biotools:pyfrap | https://bio.tools/pyfrap | SCR_022665 | SciCrunch Registry | Python Fluorescence Recovery After Photobleaching | 2026-11-07 12:00:49 | 1 | ||||||||
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ANTS marking and analysis tools Resource Report Resource Website 1+ mentions |
ANTS marking and analysis tools (RRID:SCR_022543) | data analysis software, data processing software, software application, software resource | Software tool for marking ant motion trajectories dataset from video. Provided marking software, three data quality analysis scripts, and tracking performance evaluation tool. | marking ant motion trajectories, dataset from video, tracking performance evaluation | Free, Available for download, Freely available | SCR_022543 | SciCrunch Registry | ANTS_marking_and_analysis_tools | 2026-11-07 12:00:59 | 3 | ||||||||||
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PyFDAP Resource Report Resource Website 1+ mentions |
PyFDAP (RRID:SCR_022664) | data analysis software, data processing software, software application, software resource | Software tool as automated analysis of fluorescence decay after photoconversion (FDAP) experiments. | automated analysis of fluorescence decay, photoconversion experiments, FDAP | PMID:25380959 | Free, Available for download, Freely available | SCR_022664 | SciCrunch Registry | Python Fluorescence Decay After Photoconversion | 2026-11-07 12:00:32 | 1 | |||||||||
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Chemotaxis and Migration Tool Resource Report Resource Website 1+ mentions |
Chemotaxis and Migration Tool (RRID:SCR_022708) | data analysis software, data processing software, software application, software resource | Software tool for data analysis from time stack chemotaxis experiments. Based on NIH ImageJ image processing system. | time stack chemotaxis experiments data, time stack chemotaxis experiments analysis, chemotaxis experiments graphs, statistical analysis | Free, Available for download, Freely available | SCR_022708 | SciCrunch Registry | Chemotaxis and Migration Tool version 2.0 | 2026-11-07 12:00:58 | 7 | ||||||||||
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SwissDock Resource Report Resource Website 100+ mentions |
SwissDock (RRID:SCR_022564) | data access protocol, software resource, web service | Web service to predict molecular interactions that may occur between target protein and small molecule. Protein small molecule docking web service based on EADock DSS. | Protein small molecule docking, predict molecular interactions, target protein and small molecule interactions, | FNS 310030_130857; Swiss Institute of Bioinformatics |
PMID:21624888 | Free, Freely available | SCR_022564 | SciCrunch Registry | 2026-11-07 12:01:00 | 159 | |||||||||
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SpiecEasi Resource Report Resource Website 10+ mentions |
SpiecEasi (RRID:SCR_022712) | SpiecEasi | data analysis software, data processing software, software application, software resource | Software R package for microbiome network analysis. Used for inference of microbial ecological networks from amplicon sequencing datasets. Combines data transformations developed for compositional data analysis with graphical model inference framework that assumes underlying ecological association network is sparse. | microbiome network analysis, amplicon sequencing datasets, microbial ecological networks inference | NIAID AI007180; NIDDK DK103358; NIGMS GM63270; Simons Foundation |
PMID:25950956 | Free, Available for download, Freely available | SCR_022712 | SciCrunch Registry | SParse InversE Covariance Estimation for Ecological Association Inference | 2026-11-07 12:00:50 | 20 | |||||||
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CORAL Resource Report Resource Website 50+ mentions |
CORAL (RRID:SCR_022711) | CORAL | data analysis software, data processing software, software application, software resource | Software tool as framework for rigorous self validated data modeling and integrative, reproducible data analysis. | FAIR data, Contexton, Microtype, Data Management, Provenance, Data Analysis, Jupyter | has parent organization: University of California at Berkeley; Berkeley; USA | US Department of Energy | Free, Available for download, Freely available | SCR_022711 | SciCrunch Registry | Contextual Ontology based Repository Analysis Library | 2026-11-07 12:00:33 | 95 |
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