Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Diploidocus Resource Report Resource Website 1+ mentions |
Diploidocus (RRID:SCR_021231) | data analysis software, data processing software, sequence analysis software, software application, software resource, software toolkit | Software package for diploid genome assembly analysis. Sequence analysis toolkit for number of different analyses related to diploid genome assembly. | Diploid genome assembly analysis, genome, genome assembly, sequence analysis | uses: DepthSizer | Free, Available for download, Freely available | SCR_021231 | SciCrunch Registry | 2026-11-07 12:00:53 | 3 | ||||||||||
|
JUMP Cell Painting Consortium Resource Report Resource Website 1+ mentions |
JUMP Cell Painting Consortium (RRID:SCR_021868) | consortium, data or information resource, organization portal, portal | Consortium is creating new data driven approach to drug discovery based on cellular imaging, image analysis, and high dimensional data analytics. Creates public data set to validate and scale up this image based drug discovery strategy. By coordinating assay procedures across partners, future created data will be well matched. Aims to make cell images as computable as genomes and transcriptomes. | creating new data, drug discovery, cellular imaging, image analysis, high dimensional data analytics, | has parent organization: Broad Institute | Free, Freely available | SCR_021868 | SciCrunch Registry | JUMP-Cell Painting Consortium | 2026-11-07 12:00:44 | 2 | |||||||||
|
CytoMAP Resource Report Resource Website 10+ mentions |
CytoMAP (RRID:SCR_021227) | data analysis software, data analytics software, data processing software, software application, software resource, software toolkit | Software tool as spatial analysis software for whole tissue sections.Utilizes information on cell type and position to phenotype local neighborhoods and reveal how their spatial distribution leads to generation of global tissue architecture.Used to make advanced data analytic techniques accessible for single cell data with position information. | Histo cytometric multidimensional, analysis pipeline, whole tissue sections, spatial analysis, single cell data with position information, phenotype local neighborhoods, global tissue architecture | has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA | NIAID R01 AI076327; NIAID R01 AI134246; NIAID R01 AI134713; NIAID R21 AI142667; NIAID T32 AI10667; NIAID U19 AI135976; NICHD T32 HD007233; NIGMS T32 GM007270; NSF DGE 1762114 |
PMID:32320656 | Free, Available for download, Freely available | SCR_021227 | SciCrunch Registry | Histo-Cytometric Multidimensional Analysis Pipeline | 2026-11-07 12:00:44 | 23 | |||||||
|
Eco-HAB Resource Report Resource Website |
Eco-HAB (RRID:SCR_021588) | data or information resource, instrument resource, portal, project portal | Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists. | Instrument, murine social behavior, automated measurement, mice social preference, mice cohort sociability, social preference analysis, OpenBehavior |
is listed by: OpenBehavior has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
DOI:10.7554/elife.19532 | Free, Freely available | SCR_021588 | SciCrunch Registry | 2026-11-07 12:00:53 | 0 | |||||||||
|
Oculomatic Eye Tracking project Resource Report Resource Website |
Oculomatic Eye Tracking project (RRID:SCR_021465) | data or information resource, instrument resource, portal, project portal | Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates. | High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Oculomatic has parent organization: New York University; New York; USA |
DOI:10.1016/j.jneumeth.2016.06.016 | Free, Freely available | SCR_021465 | SciCrunch Registry | Oculomatic Eye Tracking | 2026-11-07 12:00:26 | 0 | ||||||||
|
M-Track Resource Report Resource Website |
M-Track (RRID:SCR_021508) | data processing software, image analysis software, software application, software resource, software toolkit | Software toolbox for automated detection of forepaw trajectories in mice.Open source code to simultaneously track movement of individual paws during spontaneous grooming episodes and walking in multiple freely behaving mice/rats. | Automated detection, forepaw trajectories, labelled forepaw, freely behaving mice, freely behaving rats, simultaneous trackcking individual paws, movement, spontaneous grooming episodes, OpenBehavior |
is listed by: OpenBehavior is related to: M-Track project |
DOI:10.1371/journal.pcbi.1005115 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/m-track/ | SCR_021508 | SciCrunch Registry | 2026-11-07 12:00:52 | 0 | ||||||||
|
NF Data Portal Resource Report Resource Website 1+ mentions |
NF Data Portal (RRID:SCR_021683) | data or information resource, data repository, portal, service resource, storage service resource | Portal created to help openly explore and share NF datasets, analysis tools, resources, and publications related to neurofibromatosis and schwannomatosis.Public data repository that stores and shares data generated by multiple collaborative research programs focused on neurofibromatosis diseases. | Sage Bionetworks, NF datasets, neurofibromatosis data, schwannomatosis data, neurofibromatosis diseases | uses: Synapse | neurofibromatosis type 1 (NF1), neurofibromatosis type 2 (NF2), and schwannomatosis (SCH) | Childrens Tumor Foundation ; Neurofibromatosis Therapeutic Acceleration Program |
PMID:31836719 | Free, Freely available | r3d100013571 | https://doi.org/10.17616/R31NJMYR | SCR_021683 | SciCrunch Registry | Neurofibromatosis Data Portal | 2026-11-07 12:00:54 | 5 | ||||
|
Moving Wall Box Resource Report Resource Website |
Moving Wall Box (RRID:SCR_021559) | data or information resource, instrument resource, portal, project portal | Portal provides Moving Wall Box system used to testing strategy task where mouse is repeatedly forced to jump over small ice by slowly moving walls whereby presence of animal is automatically sensed via balances and analyzed by microcontroller board which in turn controls movements of walls. Device provided by Max Planck Institute of Psychiatry scientist. Used for repeated assessment of fear coping strategies. | Instrument, behavioral inhibition, emotional challenging situation, OpenBehavior |
is listed by: OpenBehavior has parent organization: Max-Planck-Gesellschaft |
DOI:10.3389/fnbeh.2017.00201 | Free, Freely available | SCR_021559 | SciCrunch Registry | 2026-11-07 12:00:44 | 0 | |||||||||
|
Subcellular App Resource Report Resource Website 1+ mentions |
Subcellular App (RRID:SCR_018790) | data access protocol, service resource, software resource, web service | Web interface for simulation of biological molecular networks. Web based environment for creation and simulation of reaction-diffusion models integrated with molecular repository. Allows to import, combine and simulate existing models expressed with BNGL and SBML languages. Application is integrated with number of solvers for reaction-diffusion systems of equations. | Subcellular simulation, reaction-diffusion modeling, brain simulation platform, human brain project, subcellular model, biological molecular network simulation, reaction diffusion model, solver, reaction diffusion system, equation, simulation, molecular network | has parent organization: Human Brain Project EU | Human Brain Project SGA 1-3 | Restricted | SCR_018791 | https://humanbrainproject.github.io/hbp-sp6-guidebook/online_usecases/subcellular_level/subcellular_app/subcellular_app.html | SCR_018790 | SciCrunch Registry | Subcellular app, subcellular application, Subcellular Application | 2026-11-07 12:00:25 | 1 | ||||||
|
purge dups Resource Report Resource Website 500+ mentions |
purge dups (RRID:SCR_021173) | data analysis software, data processing software, software application, software resource | Software tool to purge haplotigs and overlaps in assembly based on read depth.Used for haplotypic duplication identification. Designed to remove haplotigs and contig overlaps in a de novo assembly based on read depth. | haplotypic duplication identification, remove haplotigs overlap, remove contig overlaps, de novo assembly, read depth | Free, Available for download, Freely available | SCR_021173 | SciCrunch Registry | purge_dups | 2026-11-07 12:00:25 | 503 | ||||||||||
|
NASEM Standing Committee on Emerging Infectious Diseases and 21st Century Health Threats Resource Report Resource Website |
NASEM Standing Committee on Emerging Infectious Diseases and 21st Century Health Threats (RRID:SCR_018289) | consortium, data or information resource, organization portal, portal | Committee provides expert consultation on data elements and systems design for modeling and decision making for COVID-19 pandemic. Assembled at request of White House Office of Science and Technology Policy and Office of Assistant Secretary for Preparedness and Response in response to COVID-19 outbreak. Provides expert consultations on several topics, such as surface stability and incubation, social distancing, and crisis standards of care. | Data, consultation, COVID-19, expertise, crisis standard of care | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Free, Freely available | https://www.nap.edu/read/25755/chapter/1 | SCR_018289 | SciCrunch Registry | Engineering, National Academies of Science, and Medicine Standing Committee on Emerging Infectious Diseases and 21st Century Health Threats | 2026-11-07 12:00:43 | 0 | |||||||
|
UCLA Diffraction Anisotropy Server Resource Report Resource Website 1+ mentions |
UCLA Diffraction Anisotropy Server (RRID:SCR_018722) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server to indicate severity of anisotropy in data set. Degree of anisotropy is indicated by anisotropic delta B statistic. | Anisotropy, anisotropy severity, anisotropy severity indication, anisotropy degree, anisotropic delta B statistic | has parent organization: University of California at Los Angeles; California; USA | Free, Freely available | SCR_018722 | SciCrunch Registry | 2026-11-07 12:00:53 | 8 | ||||||||||
|
UMI4Cats Resource Report Resource Website 1+ mentions |
UMI4Cats (RRID:SCR_021780) | data analysis software, data processing software, data visualization software, software application, software resource | Software R package for analyzing UMI-4C chromatin contact data. Used to analyze chromatin contact profiles obtained by UMI-4C. | Profile and quantitatively compare, targeted chromosomal contact profiles, unique molecular identifiers, combines chromosome conformation capture | DOI:10.1093/bioinformatics/btab392 | Free, Available for download, Freely available | https://bioconductor.org/packages/UMI4Cats/, https://github.com/Pasquali-lab/UMI4Cats | SCR_021780 | SciCrunch Registry | Unique Molecular Identifiers combines chromosome conformation capture | 2026-11-07 12:00:26 | 2 | ||||||||
|
Computational Analysis of gene Family Evolution Resource Report Resource Website 10+ mentions |
Computational Analysis of gene Family Evolution (RRID:SCR_018924) | CAFE | data analysis software, data processing software, software application, software resource | Software tool for computational analysis of gene family evolution. Used for statistical analysis of evolution gene family sizes. Models evolution of gene family sizes over phylogeny. | Computational analysis, gene family evolution, evolution statistical analysis, gene family size, gene evolution, phylogeny | has parent organization: Indiana University; Indiana; USA | Lilly Endowment ; Inc ; METACyt Initiative of Indiana University ; NHGRI R33 HG003070; NSF MCB 0528465 |
PMID:16543274 | SCR_018924 | SciCrunch Registry | CAFE v2.0, CAFE v4.0, CAFE v3.0, CAFE v5.0, Computational Analysis of gene Family Evolution | 2026-11-07 12:00:53 | 17 | |||||||
|
Creative Peptides PNA Modification by C Replacement Service Resource Resource Report Resource Website |
Creative Peptides PNA Modification by C Replacement Service Resource (RRID:SCR_022230) | service resource | PNA modification service provides replacement of backbone C. | Creative Peptides, PNA Biotech, biomedical service, replacement of backbone C, peptide nucleic acid |
is related to: Creative Peptides PNA Modification Service Resource has parent organization: Creative Peptides |
Restricted | SCR_022230 | SciCrunch Registry | Modification by C Replacement | 2026-11-07 12:00:27 | 0 | |||||||||
|
SuperSegger Resource Report Resource Website 1+ mentions |
SuperSegger (RRID:SCR_018532) | data processing software, image analysis software, software application, software resource, software toolkit | Software package as automated MATLAB based trainable image cell segmentation, fluorescence quantification and analysis suite. Used for high throughput time lapse fluorescence microscopy of in vivo bacterial cells. Robust image segmentation, analysis and lineage tracking of bacterial cells. | Image cell segmentation, fluorescence quantification, data analysis, high throughput, time lapse, fluorescence microscopy, bacteria cell, image segmentation |
is related to: MATLAB has parent organization: University of Washington; Seattle; USA |
Danish National Research Foundation ; NSF MCB‐1151043‐CAREER; NSF PHY‐084845; Sloan BR2011‐110; University of Washington Royalty Research Fund |
PMID:27569113 | Free, Available for download, Freely available | https://github.com/wiggins-lab/SuperSegger | SCR_018532 | SciCrunch Registry | 2026-11-07 12:00:43 | 3 | |||||||
|
Creative Peptides PNA N/C Terminal Modification Service Resource Resource Report Resource Website |
Creative Peptides PNA N/C Terminal Modification Service Resource (RRID:SCR_022229) | service resource | Service to modify monomer backbone, including chemically active sites at both ends. Monomer N-terminal and C-terminal modification. | Creative Peptides, PNA Biotech, biomedical service, N-terminal and C-terminal modification, peptide nucleic acid, PNA |
is related to: Creative Peptides PNA Modification Service Resource has parent organization: Creative Peptides |
Restricted | SCR_022229 | SciCrunch Registry | N/C Terminal Modification | 2026-11-07 12:00:54 | 0 | |||||||||
|
Simple Behavior Analysis Resource Report Resource Website 10+ mentions |
Simple Behavior Analysis (RRID:SCR_021413) | data analysis software, data processing software, software application, software resource, software toolkit | Open source software toolkit for computer classification of complex social behaviors in experimental animals. | Complex social behaviors classifications, supervised behavioral classifiers development, score behaviors across different background settings, OpenBehavior |
is listed by: OpenBehavior is related to: Simple Behavior Analysis project |
DOI:10.1101/2020.04.19.049452 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/simba/ | SCR_021413 | SciCrunch Registry | SimBA | 2026-11-07 12:00:53 | 16 | |||||||
|
NCBI Virus Resource Report Resource Website 50+ mentions |
NCBI Virus (RRID:SCR_018253) | data access protocol, data or information resource, portal, software resource, topical portal, web service | Community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories. Integrative, value added resource designed to support retrieval, display and analysis of curated collection of virus sequences and large sequence datasets. Used to increase usability of data archived in GenBank and other NCBI repositories. | Viral sequence data, viral data retrival, viral data analysis, viral data display, curated virus sequence, data set |
is related to: RefSeq is related to: GenBank |
PMID:27899678 | Free, Freely available | SCR_018253 | SciCrunch Registry | National Center for Biotechnology Information Virus | 2026-11-07 12:00:53 | 76 | ||||||||
|
Creative Biogene Pelodictyon Cultivation Service Resource Resource Report Resource Website |
Creative Biogene Pelodictyon Cultivation Service Resource (RRID:SCR_022244) | service resource | Service for Pelodictyon cultivation. | Creative Biogene, biomedical service, Pelodictyon, bacteria cultivation. | has parent organization: Creative Biogene | Restricted | SCR_022244 | SciCrunch Registry | Pelodictyon Cultivation | 2026-11-07 12:00:54 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the ASWG Resources search. From here you can search through a compilation of resources used by ASWG and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that ASWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on ASWG then you can log in from here to get additional features in ASWG such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into ASWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the ASWG Community.
Our Information
