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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Agilent: RGC-100 and RGC-150 Rough Gauge Controllers Resource Report Resource Website |
Agilent: RGC-100 and RGC-150 Rough Gauge Controllers (RRID:SCR_019536) | instrument resource | Rough Gauge Controllers are used for general vacuum measurement in rough vacuum range, monitoring forelines, chamber evacuation, and crossover to high vacuum pumps. | Agilent, Gauge Controller, Instrument, Equipment | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019536.pdf | Model_Number_RGC_100 | SCR_019536 | SciCrunch Registry | 2026-11-07 11:59:18 | 0 | |||||||||
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Agilent: Resolve Handheld Through-Barrier Identification System Resource Report Resource Website 10+ mentions |
Agilent: Resolve Handheld Through-Barrier Identification System (RRID:SCR_019533) | instrument resource | Resolve handheld Raman spectrometer enables rapid identification of explosives, narcotics, toxic industrial chemicals, chemical warfare agents and other materials through sealed, opaque containers. | Agilent, Chemical Identification, Instrument, Equipment, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019533.pdf | Model_Number_Resolve | SCR_019533 | SciCrunch Registry | 2026-11-07 11:59:33 | 11 | |||||||||
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Agilent: Reciprocating Holder Dissolution Apparatus 7 Resource Report Resource Website |
Agilent: Reciprocating Holder Dissolution Apparatus 7 (RRID:SCR_019534) | instrument resource | Dissolution Apparatus 7 is used for automatic dissolution testing of dosage forms requiring a change of media, smaller volume or more vigorous agitation. | Agilent, Dissolution Apparatus, Instrument, Equipment, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019534.pdf | Model_Number_Apparatus_7 | SCR_019534 | SciCrunch Registry | 2026-11-07 11:59:27 | 0 | |||||||||
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Agilent: RPS-1401/301 Roots Pumping System Resource Report Resource Website |
Agilent: RPS-1401/301 Roots Pumping System (RRID:SCR_019535) | instrument resource | Roots Pumping System is used for optimum system integration and enables continuous operation and monitoring of vacuum systems. | Agilent, Roots Pumping System, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019535.pdf | Model_Number_RPS_1401_301 | SCR_019535 | SciCrunch Registry | 2026-11-07 11:59:18 | 0 | |||||||||
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Agilent: RapidFire 365 High-Throughput Mass Spectrometry System Resource Report Resource Website 10+ mentions |
Agilent: RapidFire 365 High-Throughput Mass Spectrometry System (RRID:SCR_019530) | instrument resource | Mass Spectrometry System replaces HPLC with automated solid phase extraction SPE to increase throughput of LC MS analyses. | Agilent, High-Throughput LC/MS, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_019530.pdf | Model_Number_RapidFire 365 | SCR_019530 | SciCrunch Registry | 2026-11-07 11:59:26 | 15 | |||||||||
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Beckman Coulter: AUTION MAX AX-4030 Fully Automated Urine Chemistry Analyzer Resource Report Resource Website |
Beckman Coulter: AUTION MAX AX-4030 Fully Automated Urine Chemistry Analyzer (RRID:SCR_019617) | instrument resource | AUTION MAX AX-4030 generates accurate and reliable urine chemistry results without interruption and offers high throughput and continuous loading. | Beckman Coulter, Urine Chemistry Analyzer, Instrument Equipment, USEDit, | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019617.pdf | Model_Number_AX-4030 | SCR_019617 | SciCrunch Registry | 2026-11-07 11:59:29 | 0 | |||||||||
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Beckman Coulter: Biomek 4000 Automated Liquid Handler Resource Report Resource Website 1+ mentions |
Beckman Coulter: Biomek 4000 Automated Liquid Handler (RRID:SCR_019618) | instrument resource | Beckman Coulter Biomek 4000 Automated Liquid Handler helps standardize daily pipetting routines, maintain sample quality and generate repeatable results. | Beckman Coulter, Automated Liquid Handler, Instrument Equipment, USEDit | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019618.pdf | Model_Number_Biomek_4000 | SCR_019618 | SciCrunch Registry | 2026-11-07 11:59:21 | 2 | |||||||||
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Beckman Coulter: ACT10 Cell differential counter Resource Report Resource Website |
Beckman Coulter: ACT10 Cell differential counter (RRID:SCR_019621) | instrument resource | AcT 10 is an and hematology analyzer with whole blood and pre-dilute capabilities from Beckman/Coulter. Beckman/Coulter AcT 10 automated analyzer is intended for testing in any smaller lab facility and low-volume office labs. Ten parameters including WBC, RBC, Hgb, Hct, MCV, MCH, MCHC, Plt, Lymph # and Lymph % can be measured using this Beckman/Coulter AcT 10 analyzer. For abnormal samples, partial differential option is available. Sample volume required for the whole blood mode is 12 �L and 20 �L in pre-dilute mode. | Beckman Coulter, Cell Differential Counter, Instrument Equipment, USEDit | Commercially available | Model_Number_ACT10 | SCR_019621 | SciCrunch Registry | 2026-11-07 11:59:29 | 0 | ||||||||||
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Thermo Fisher: Applied Biosystems: ViiA Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: ViiA (RRID:SCR_019582) | instrument resource | ViiA 7 System provides enhanced fluorescence detection and enables more accurate and sensitive data analysis. | Applied Biosystems, Real Time PCR System, Instrument Equipment, USEDit | Commercially available | Model_Number_ViiA | SCR_019582 | SciCrunch Registry | 2026-11-07 11:59:36 | 6 | ||||||||||
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LeafCutter Resource Report Resource Website 10+ mentions |
LeafCutter (RRID:SCR_017639) | data analysis software, data analytics software, data processing software, software application, software resource | Software tool for identifying and quantifying RNA splicing variation. Used to study sample and population variation in intron splicing. Identifies variable intron splicing events from short read RNA-seq data and finds alternative splicing events of high complexity. Used for detecting differential splicing between sample groups, and for mapping splicing quantitative trait loci (sQTLs). | Identify, quantitate, RNA, splicing, variation, intron, short, read, RNAseq, data, mapping, trait, loci, sQTL | has parent organization: Stanford University; Stanford; California | CEHG Fellowship ; Howard Hughes Medical Institute ; NHGRI HG007036; NHGRI HG008140; NHGRI HG009431; NIMH R01 MH107666 |
PMID:29229983 DOI:10.1038/s41588-017-0004-9 |
Free, Available for download, Freely available | SCR_017639 | SciCrunch Registry | 2026-11-07 12:00:24 | 32 | ||||||||
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HiC-Pro Resource Report Resource Website 100+ mentions |
HiC-Pro (RRID:SCR_017643) | data processing software, software application, software resource, workflow software | Software tool as optimized and flexible pipeline for Hi-C data processing. Used to process Hi-C data, from raw fastq files, paired end Illumina data, to normalized contact maps. | Hi-C, data, raw, fastq, file, paired, Illumina, normalized, contact, map, bio.tools |
is listed by: Debian is listed by: bio.tools |
ABS4NGS project ; ERC Advanced Investigator award ; European Commission ; European Research Coucil ; France Genomique National infrastructure ; Howard Hughes Medical Institute ; Labex Deep ; National Human Genome Research Institute ; Paris Alliance of Cancer Research Institutes |
PMID:26619908 | Free, Available for download, Freely available | biotools:hic-pro | https://bio.tools/hic-pro | SCR_017643 | SciCrunch Registry | 2026-11-07 12:00:42 | 238 | ||||||
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Thunder Resource Report Resource Website 10+ mentions |
Thunder (RRID:SCR_016556) | data analysis software, data processing software, image analysis software, software application, software resource | Software package for the analysis of image and time series data in Python. Provides data structures and algorithms for loading, processing, and analyzing these data. Runs locally or against a Spark cluster with an identical API. | Free, Available for download, Freely available, Tutorial available | https://github.com/thunder-project/thunder | SCR_016556 | SciCrunch Registry | 2026-11-07 12:00:22 | 10 | |||||||||||
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cgpPindel Resource Report Resource Website 10+ mentions |
cgpPindel (RRID:SCR_017090) | data analysis software, data processing software, software application, software resource | Software tool as cancer genome project insertion or deletion detection workflow for Pindel. | works with: Pindel | Free, Available for download, Freely available | http://cancerit.github.io/cgpPindel/ | SCR_017090 | SciCrunch Registry | 2026-11-07 12:00:23 | 26 | ||||||||||
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tenx Resource Report Resource Website 10+ mentions |
tenx (RRID:SCR_016957) | analysis service resource, data analysis service, production service resource, service resource, software resource, software toolkit | Pipeline for the analysis of 10x single cell RNA sequencing data. Collection of python3 pipelines and Rscripts to analyze data generated with the 10x Genomics platform. The pipelines are based on 10x's Cell Ranger pipeline for mapping and quantitation and the R Seurat package for downstream analysis. | analysis, 10x, single, cell, RNA, sequencing, data, genomic, platform, mapping, quantitation | Free, Available for download, Freely available | SCR_016957 | SciCrunch Registry | 2026-11-07 12:00:23 | 13 | |||||||||||
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Mizutani Lab 3D Structure Portal Resource Report Resource Website 1+ mentions |
Mizutani Lab 3D Structure Portal (RRID:SCR_016529) | data or information resource, data repository, laboratory portal, organization portal, portal, service resource, storage service resource | Departamental portal of Applied Biochemistry, School of Engineering, Tokai University, Japan. Used for computed tomography (CT) and visualizing 3D structures of biological soft tissues represented with Cartesian coordinates. | computed, tomography, visualize, 3D structure, biological, soft, tissue, imaging, sectioning, | Free, Available for download, Freely available, DVDs commercially available | SCR_016529 | SciCrunch Registry | 2026-11-07 12:00:51 | 2 | |||||||||||
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Marvel Resource Report Resource Website 1+ mentions |
Marvel (RRID:SCR_017621) | alignment software, data processing software, image analysis software, software application, software resource, software toolkit | Software set of tools that facilitate overlapping, patching, correction and assembly of noisy long reads. | Overlapping, patching, correction, assembly, noisy, long, read, sequence, align | Free, Available for download, Freely available | SCR_017621 | SciCrunch Registry | 2026-11-07 12:00:52 | 2 | |||||||||||
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Letswave Resource Report Resource Website 10+ mentions |
Letswave (RRID:SCR_016414) | data processing software, data visualization software, software application, software resource, software toolkit | Open source electroencephalogram (EEG) signal processing toolbox to process and visualise EEG/MEG data and other neurophysiological signals. | process, visualise, EEG, MEG, data, neurophysiological, signal, brain, neuroscience | is related to: MATLAB | Free, Available for download, Freely available | https://www.letswave.org/ | SCR_016414 | SciCrunch Registry | 2026-11-07 12:00:51 | 27 | |||||||||
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TSDiffAna Resource Report Resource Website 1+ mentions |
TSDiffAna (RRID:SCR_016656) | data analysis software, data processing software, image analysis software, software application, software resource | Software tool developed for Statistical Parametric Mapping (SPM) that computes slicewise scan by scan difference and standard deviations. Used to examine quality of image timeseries. | SPM, statistical, parametiric, mapping, slicewise, scan, difference, standard, deviation, quality, image, neuroimaging, data |
has parent organization: University College London; London; United Kingdom is provided by: SPM |
Free, Available for download, Freely available | https://sourceforge.net/projects/tsdiffana.spmtools.p/ | SCR_016656 | SciCrunch Registry | 2026-11-07 12:00:22 | 2 | |||||||||
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DoG picker Resource Report Resource Website 10+ mentions |
DoG picker (RRID:SCR_016655) | DoG picker | data processing software, image processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18,2023. Software tool for general particle picking in the single-particle processing of unknown macromolecules. Reference free particle picker with ability to sort particles based on size or it can be used to bootstrap the creation of templates or training datasets for other particle pickers. Used to facilitate particle selection in single particle electron microscopy., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | general, single, particle, picking, macromolecule, size, selection, electron, microscopy, image, transform | is listed by: OMICtools | NCRR RR17573; NCRR RR23093 |
PMID:19374019 | THIS RESOURCE IS NO LONGER IN SERVICE | http://emg.nysbc.org/redmine/projects/appion/wiki/Appion_Home | SCR_016655 | SciCrunch Registry | Difference of Gaussians (DoG) picker, Difference of Gaussians Picker, Difference of Gaussians picker | 2026-11-07 12:00:48 | 23 | |||||
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Nutil - Neuroimaging utilities Resource Report Resource Website 10+ mentions |
Nutil - Neuroimaging utilities (RRID:SCR_017183) | Nutil | data processing software, image analysis software, image processing software, software application, software resource, software toolkit | Software toolbox to simplify and streamline mechanism of pre and post processing 2D brain image data. Neuroscience image processing and analysis utilities. Stand alone application that runs on all operating systems. Nutil is part of the QUINT workflow. | neuroscience, 2D, brain, image, data, processing, analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Allen Institute for Brain Science has parent organization: University of Oslo; Oslo; Norway works with: VisuAlign |
European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA) and the European Union’s Horizon Europe Programme for Research Infrastructures Grant Agreement No. 101147319 (EBRAINS 2.0). | PMID:32973479 | Free, Available for download, Freely available | https://nutil.readthedocs.io; https://github.com/Neural-Systems-at-UIO/nutil | SCR_017183 | SciCrunch Registry | Neuroimaging utilities | 2026-11-07 12:00:41 | 28 |
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