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https://www.agilent.com/en/products/dissolution/apparatus/reciprocating-holder-apparatus-7

Dissolution Apparatus 7 is used for automatic dissolution testing of dosage forms requiring a change of media, smaller volume or more vigorous agitation.

Proper citation: Agilent: Reciprocating Holder Dissolution Apparatus 7 (RRID:SCR_019534) Copy   

•   Source: SciCrunch Registry
  

https://www.agilent.com/en/products/vacuum-technologies/primary-medium-vacuum-pumps/rps-series-roots-pumping-systems/rps-1401-301

Roots Pumping System is used for optimum system integration and enables continuous operation and monitoring of vacuum systems.

Proper citation: Agilent: RPS-1401/301 Roots Pumping System (RRID:SCR_019535) Copy   

•   Source: SciCrunch Registry
  

https://www.agilent.com/en/products/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-instruments/high-throughput-lc-ms/rapidfire-365

Mass Spectrometry System replaces HPLC with automated solid phase extraction SPE to increase throughput of LC MS analyses.

Proper citation: Agilent: RapidFire 365 High-Throughput Mass Spectrometry System (RRID:SCR_019530) Copy   

•   Source: SciCrunch Registry
  

https://www.beckmancoulter.com/en/products/urinalysis/aution-max-ax-4030

AUTION MAX AX-4030 generates accurate and reliable urine chemistry results without interruption and offers high throughput and continuous loading.

Proper citation: Beckman Coulter: AUTION MAX AX-4030 Fully Automated Urine Chemistry Analyzer (RRID:SCR_019617) Copy   

•   Source: SciCrunch Registry
  

https://www.beckman.com/liquid-handlers/biomek-4000

Beckman Coulter Biomek 4000 Automated Liquid Handler helps standardize daily pipetting routines, maintain sample quality and generate repeatable results.

Proper citation: Beckman Coulter: Biomek 4000 Automated Liquid Handler (RRID:SCR_019618) Copy   

•   Source: SciCrunch Registry
  

https://analyticalinstrument.com/index.php/lab-equipment/beckman-coulter-act-10-6706319-detail

AcT 10 is an and hematology analyzer with whole blood and pre-dilute capabilities from Beckman/Coulter. Beckman/Coulter AcT 10 automated analyzer is intended for testing in any smaller lab facility and low-volume office labs. Ten parameters including WBC, RBC, Hgb, Hct, MCV, MCH, MCHC, Plt, Lymph # and Lymph % can be measured using this Beckman/Coulter AcT 10 analyzer. For abnormal samples, partial differential option is available. Sample volume required for the whole blood mode is 12 �L and 20 �L in pre-dilute mode.

Proper citation: Beckman Coulter: ACT10 Cell differential counter (RRID:SCR_019621) Copy   

•   Source: SciCrunch Registry
  

https://www.thermofisher.com/us/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system.html

ViiA 7 System provides enhanced fluorescence detection and enables more accurate and sensitive data analysis.

Proper citation: Thermo Fisher: Applied Biosystems: ViiA (RRID:SCR_019582) Copy   

•   Source: SciCrunch Registry
  

https://github.com/davidaknowles/leafcutter/

Software tool for identifying and quantifying RNA splicing variation. Used to study sample and population variation in intron splicing. Identifies variable intron splicing events from short read RNA-seq data and finds alternative splicing events of high complexity. Used for detecting differential splicing between sample groups, and for mapping splicing quantitative trait loci (sQTLs).

Proper citation: LeafCutter (RRID:SCR_017639) Copy   

•   Source: SciCrunch Registry
  

https://github.com/nservant/HiC-Pro

Software tool as optimized and flexible pipeline for Hi-C data processing. Used to process Hi-C data, from raw fastq files, paired end Illumina data, to normalized contact maps.

Proper citation: HiC-Pro (RRID:SCR_017643) Copy   

•   Source: SciCrunch Registry
  

http://thunder-project.org/

Software package for the analysis of image and time series data in Python. Provides data structures and algorithms for loading, processing, and analyzing these data. Runs locally or against a Spark cluster with an identical API.

Proper citation: Thunder (RRID:SCR_016556) Copy   

•   Source: SciCrunch Registry
  

https://github.com/cancerit/cgpPindel

Software tool as cancer genome project insertion or deletion detection workflow for Pindel.

Proper citation: cgpPindel (RRID:SCR_017090) Copy   

•   Source: SciCrunch Registry
  

https://github.com/sansomlab/tenx

Pipeline for the analysis of 10x single cell RNA sequencing data. Collection of python3 pipelines and Rscripts to analyze data generated with the 10x Genomics platform. The pipelines are based on 10x's Cell Ranger pipeline for mapping and quantitation and the R Seurat package for downstream analysis.

Proper citation: tenx (RRID:SCR_016957) Copy   

•   Source: SciCrunch Registry
  

https://mizutanilab.github.io/db.htm

Departamental portal of Applied Biochemistry, School of Engineering, Tokai University, Japan. Used for computed tomography (CT) and visualizing 3D structures of biological soft tissues represented with Cartesian coordinates.

Proper citation: Mizutani Lab 3D Structure Portal (RRID:SCR_016529) Copy   

•   Source: SciCrunch Registry
  

https://github.com/schloi/MARVEL

Software set of tools that facilitate overlapping, patching, correction and assembly of noisy long reads.

Proper citation: Marvel (RRID:SCR_017621) Copy   

•   Source: SciCrunch Registry
  

https://github.com/NOCIONS/letswave6/wiki/Download-and-setup

Open source electroencephalogram (EEG) signal processing toolbox to process and visualise EEG/MEG data and other neurophysiological signals.

Proper citation: Letswave (RRID:SCR_016414) Copy   

•   Source: SciCrunch Registry
  

https://www.fil.ion.ucl.ac.uk/spm/ext/#TSDiffAna

Software tool developed for Statistical Parametric Mapping (SPM) that computes slicewise scan by scan difference and standard deviations. Used to examine quality of image timeseries.

Proper citation: TSDiffAna (RRID:SCR_016656) Copy   

•   Source: SciCrunch Registry
  

https://omictools.com/dog-picker-tool

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18,2023. Software tool for general particle picking in the single-particle processing of unknown macromolecules. Reference free particle picker with ability to sort particles based on size or it can be used to bootstrap the creation of templates or training datasets for other particle pickers. Used to facilitate particle selection in single particle electron microscopy., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: DoG picker (RRID:SCR_016655) Copy   

•   Source: SciCrunch Registry
  

http://www.nitrc.org/projects/nutil/

Software toolbox to simplify and streamline mechanism of pre and post processing 2D brain image data. Neuroscience image processing and analysis utilities. Stand alone application that runs on all operating systems. Nutil is part of the QUINT workflow.

Proper citation: Nutil - Neuroimaging utilities (RRID:SCR_017183) Copy   

•   Source: SciCrunch Registry
  

https://kidsfirstdrc.org/portal/portal-features/

Portal for analysis and interpretation of pediatric genomic and clinical data to advance personalized medicine for detection, therapy, and management of childhood cancer and structural birth defects. For patients, researchers, and clinicians to create centralized database of well curated clinical and genetic sequence data from patients with childhood cancer or structural birth defects.

Proper citation: Kids First Data Resource Portal (RRID:SCR_016493) Copy   

•   Source: SciCrunch Registry
  

https://www.mathworks.com/products/computer-vision.html

Software tool to provide algorithms, functions, and apps for designing and testing computer vision, 3D vision, and video processing systems for MATLAB. You can perform object detection and tracking, as well as feature detection, extraction, and matching. For 3D vision, toolbox supports single, stereo, and fisheye camera calibration; stereo vision; 3D reconstruction; and lidar and 3D point cloud processing. Computer vision apps automate ground truth labeling and camera calibration workflows.

Proper citation: Computer Vision System Toolbox (RRID:SCR_017581) Copy   

•   Source: SciCrunch Registry