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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Selleck Chemicals LLC Resource Report Resource Website 100+ mentions |
Selleck Chemicals LLC (RRID:SCR_003823) | commercial organization | An Antibody supplier | antibody, chemical supply, selleck chemicals | nlx_152457 | SCR_003823 | Selleck Chemicals | 2026-08-01 12:02:20 | 192 | ||||||||||
|
BioClinica Resource Report Resource Website 100+ mentions |
BioClinica (RRID:SCR_003789) | BioClinica | commercial organization | Pennsylvania-based company supporting pharmaceutical and medical device innovation with imaging core lab, EDC, IVR / IWR, CTMS, and supply chain forecasting and optimization. Its initial service was medical imaging for clinical trials. It is used to capture, collect, control quality, provide blinded reading services to the final delivery to the sponsor company and to the FDA or EMEA if required for medical images in a wide range of imaging modalities. (Wikipedia) | clinical trial, pharmaceutical, medical device, medical imaging, cardiac safety, clinical | Crossref funder ID: 100007742, ISNI: 0000 0004 0602 1531, Wikidata: Q4914605, grid.430790.9, nlx_158082 | https://ror.org/03t95yr58 | SCR_003789 | BioClinica Inc. | 2026-08-01 12:02:33 | 101 | ||||||||
|
Medical University of South Carolina; South Carolina; USA Resource Report Resource Website |
Medical University of South Carolina; South Carolina; USA (RRID:SCR_003828) | MUSC | university | Public medical school in Charleston, South Carolina. Opened in 1824 as small private college aimed at training physicians. One of the oldest continually operating schools of medicine in the United States and the oldest in the Deep South. |
is affiliated with: NIH StrokeNet is related to: Clinical and Translational Science Awards Consortium is parent organization of: MUSC Health News is parent organization of: Hollings Cancer Center Tissue Biorepository and Research Pathology Services Shared Resource is parent organization of: SPARC Request is parent organization of: Medical University of South Carolina Department of Cell and Molecular Pharmacology and Experimental Therapeutics is parent organization of: Medical University of South Carolina Center on Aging is parent organization of: MUSC Health Podcast Library is parent organization of: Charleston Heart Study is parent organization of: Diffusional Kurtosis Estimator is parent organization of: ArrayQuest is parent organization of: MUSC DNA Microarray Database is parent organization of: NiiStat is parent organization of: MRIcroS is parent organization of: Medical University of South Carolina College of Dental Medicine Gnotobiotic Animal Core Facility is parent organization of: University of South Carolina Electron Microscopy Core Facility is parent organization of: Medical University of South Carolina Hollings Cancer Center Cell and Molecular Imaging Core Facility is parent organization of: Medical University of South Carolina MUSC Mouse Behavior Phenotyping Core Facility |
nlx_34109 | SCR_003828 | Medical University of South Carolina | 2026-08-01 12:02:33 | 0 | |||||||||
|
Quretec Resource Report Resource Website 1+ mentions |
Quretec (RRID:SCR_003826) | Quretec | commercial organization | Commercial organization that builds software for collection, management, and analysis of complex data, most typical in biomedical domain. The solutions are generic and can be used for multitude of uses and application domains. | data capture, data management, analysis, biomedical | is related to: AgedBrainSYSBIO | grid.436973.c, Wikidata: Q30291134, nlx_158133 | https://ror.org/02ca38p84 | SCR_003826 | Quretec Ltd., Quretec Ltd | 2026-08-01 12:02:20 | 2 | |||||||
|
Grants.gov Resource Report Resource Website 10+ mentions |
Grants.gov (RRID:SCR_002661) | funding resource | A source to FIND and APPLY for federal grants. The U.S. Department of Health and Human Services is proud to be the managing partner for Grants.gov, an initiative that is having an unparalleled impact on the grant community. All discretionary grants offered by the 26 federal grant-making agencies can be found on Grants.gov. Grants.gov was established as a governmental resource named the E-Grants Initiative, part of the President's 2002 Fiscal Year Management Agenda to improve government services to the public. The concept has its origins in the Federal Financial Assistance Management Improvement Act of 1999, also known as Public Law 106-107. Public Law 106-107 has since sunset and is now known as the Grants Policy Committee (GPC). For more information on the Grants Policy Committee, click here. Today, Grants.gov is a central storehouse for information on over 1,000 grant programs and provides access to approximately $500 billion in annual awards. You may find information on *What is a Grant? *Who is Eligible for a Grant? *Program highlights and accomplishments *Grants.gov in the News (Articles, press releases, milestones and events) *Program Status (Detailed information about our relationship with partner federal agencies, financial contributions, grant opportunities, fiscal reports, planning strategies and statistics.) | grant, funding, award, database, opportunity |
is used by: NIF Data Federation is used by: Aging Portal is used by: NIDDK Information Network (dkNET) |
Free, Freely available | nif-0000-22393 | SCR_002661 | 2026-08-01 12:02:12 | 36 | |||||||||
|
NiBabel Resource Report Resource Website 100+ mentions |
NiBabel (RRID:SCR_002498) | NiBabel | software resource | A Python package for reading and writing a variety of medical and neuroimaging file formats. This includes: ANALYZE (plain, SPM99, SPM2), NIfTI1, as well as MINC. NiBabel is the successor of PyNIfTI. | magnetic resonance, python, neuroimaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: PyNIfTI is related to: MNE software has parent organization: Neuroimaging in Python |
Free, Available for download, Freely available | nlx_155896 | http://www.nitrc.org/projects/nibabel | SCR_002498 | NIPY File IO | 2026-08-01 12:02:08 | 122 | ||||||
|
Pythagorean Displacement and Motion Regressors Resource Report Resource Website 1+ mentions |
Pythagorean Displacement and Motion Regressors (RRID:SCR_002525) | Pythagorean Displacement and Motion Regressors | software resource | Matlab script that uses the Pythagorean Theorem to calculate head motion and position, while preserving degrees of freedom. The motion parameters output by SPM (rp*.txt) estimate head position relative to the first volume in 3D translation and 3D rotation, which are often entered as a nuisance regressor during individual-level statistics. Regressing the total displacement and relative position can potentially explain more variance in voxel-level BOLD signals that is related to head movement during an fMRI experiment. | algorithm, magnetic resonance, matlab, pythagorean theorem, head, motion, position, fmri | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155931 | SCR_002525 | 2026-08-01 12:02:11 | 5 | ||||||||
|
University of Arkansas System; Arkansas; USA Resource Report Resource Website |
University of Arkansas System; Arkansas; USA (RRID:SCR_002564) | university | The public university system in Arkansas, USA that includes 4-year institutions, 2-year colleges, and affiliated units for agriculture, public service and criminal justice programs. | public university system | is parent organization of: University of Arkansas for Medical Sciences; Arkansas; USA | nlx_152182 | SCR_002564 | University of Arkansas System, UA System | 2026-08-01 12:01:50 | 0 | |||||||||
|
Altmetric Badges Resource Report Resource Website |
Altmetric Badges (RRID:SCR_002558) | commercial organization | A single line of code to add your article pages to include the Altmetric score and donut graphic on your own site with minimal technical effort. Choose from an array of different badge styles, including the colourful and iconic Altmetric donut. Implement article level metrics into your pages in minutes. Their pricing is based on the number of journals you want covered, with significant discounts for larger portfolios. You can try out the badges for free and without any commitment - however, your visitors will only see a subset of activity for each article when they click through. See the technical documentation for details. | altmetrics, count, score, altmetric score, social metric | is listed by: FORCE11 | Free, Freely available | nlx_156029 | http://www.force11.org/node/4719 | SCR_002558 | Altmetric.com embeds, The Altmetric Badges | 2026-08-01 12:01:50 | 0 | |||||||
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Signed Differential Mapping Resource Report Resource Website 100+ mentions |
Signed Differential Mapping (RRID:SCR_002554) | SDM | software resource | Statistical method and software for conducting image- and coordinate-based meta-analysis of neuroimaging studies investigating differences in brain activity (e.g. BOLD response in fMRI, metabolism in PET) or structure (e.g. gray matter volume in VBM, voxel-based or TBSS white matter fractional anisotropy in DTI, etcetera). | magnetic resonance, pet, spect, fmri, vbm, meta-analysis | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155962 | http://www.nitrc.org/projects/sdm | SCR_002554 | 2026-08-01 12:01:50 | 150 | |||||||
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MBASED Resource Report Resource Website 10+ mentions |
MBASED (RRID:SCR_002584) | software resource | Software package containing functions for allele-specific gene expression (ASE) analysis using meta-analysis based allele-specific expression detection. | software package, unix/linux, mac os x, windows, r, gene expression, sequencing, transcription |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:25315065 | Free, Available for download, Freely available | OMICS_05502 | http://www.bioconductor.org/packages/release/bioc/html/MBASED.html | SCR_002584 | Meta-analysis Based Allele-Specific Expression Detection, MBASED - Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection | 2026-08-01 12:01:51 | 17 | ||||||
|
pymzML Resource Report Resource Website 10+ mentions |
pymzML (RRID:SCR_002500) | software resource | Python module to parse mzML data in Python based on cElementTree. It is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data and (iii) a set of functions to compare or handle spectra., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | standalone software, python, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: mzML has parent organization: University of Munster; North Rhine-Westphalia; Germany |
PMID:22302572 | Free, Available for download, Freely available | biotools:pymzml, OMICS_03355 | https://bio.tools/pymzml | SCR_002500 | 2026-08-01 12:01:49 | 18 | |||||||
|
University of Auckland; Auckland; New Zealand Resource Report Resource Website 1+ mentions |
University of Auckland; Auckland; New Zealand (RRID:SCR_002615) | university | Public university in New Zealand that offers degrees in areas such as the arts, business, education, medical and health science, and law. | public university system, new zealand, degree program |
is related to: University of Auckland Biomedical Imaging Research Unit Molecular Devices ImageXpress Micro XLS is parent organization of: CellML is parent organization of: BEAST2 is parent organization of: ApiNATOMY |
Free | nlx_28115 | SCR_002615 | 2026-08-01 12:02:11 | 2 | |||||||||
|
University of Barcelona; Barcelona; Spain Resource Report Resource Website |
University of Barcelona; Barcelona; Spain (RRID:SCR_002575) | UB | university | Public university in Barcelona, Spain that offers degree programs in social sciences, engineering, and arts and humanities. | public university, barcelona, spanish university, degree program |
uses: Scizzle is related to: European Gram Negative AntiBacterial Engine is parent organization of: DnaSP is parent organization of: Bellvitge Biomedical Research Institute is parent organization of: University of Barcelona Statistics and Bioinformatics Research Group is parent organization of: SerbGO is parent organization of: nucleR |
Free | nlx_21784 | SCR_002575 | University of Barcelona, Universitat de Barcelona | 2026-08-01 12:01:50 | 0 | |||||||
|
Triangle BioSystems Resource Report Resource Website 10+ mentions |
Triangle BioSystems (RRID:SCR_002603) | TBSI | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A biomedical device company focused on developing and manufacturing neural hardware solutions for application in medical research using animals when bio-monitoring, recording and stimulation functions are needed. * Neural Recording Equipment * Neural Stimulation Equipment * Data Acquisition Hardware and Software | computational neuroscience, eeg, eeg, meg, electrocorticography, hardware, other software resource, physiological recording, software | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156006 | http://www.nitrc.org/projects/tbsi | SCR_002603 | Triangle BioSystems International | 2026-08-01 12:02:11 | 11 | ||||||
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TetraMetrix Resource Report Resource Website 1+ mentions |
TetraMetrix (RRID:SCR_002601) | TetraMetrix | software resource | An open-source software project for distributed Tetrahedral Mesh Modeling and Analysis (TMMA) of multidimensional data. Tetrahedra are 3D, space filling, geometric objects that can be used to form representations and partitions of objects like volumes and shapes obtained from biomedical images (e.g., 3D MRI brain images). Tetrahedra are a natural extension of lines (1D) and surface triangulations (2D) which enable finite element analysis of irregular shapes, and permit a greater range of morphometric characterization of multidimensional objects. A beta version of the program is available for download. Please see the very brief instructions on the "Docs" tab on the left. | magnetic resonance, 3d, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Laboratory of Neuro Imaging |
Free, Available for download, Freely available | nlx_156004 | SCR_002601 | 2026-08-01 12:02:11 | 1 | ||||||||
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University of Athens; Athens; Greece Resource Report Resource Website 1+ mentions |
University of Athens; Athens; Greece (RRID:SCR_002607) | UoA | university | Public university in Athens, Greece that offers degree programs in health sciences, law and economics, and theology. | public university in greece |
is related to: EARIP is related to: ORBITO is related to: International AMD Genetics Consortium is parent organization of: Digital Repository Infrastructure Vision for European Research is parent organization of: University of Athens Biophysics and Bioinformatics Laboratory |
Free | ISNI:0000 0001 2155 0800, grid.5216.0, Wikidata:Q547867, Crossref funder ID:501100005187, nlx_94434 | https://ror.org/04gnjpq42 | SCR_002607 | University of Athens, National and Kapodistrian University of Athens | 2026-08-01 12:01:51 | 4 | ||||||
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Open Journal Systems Resource Report Resource Website 1+ mentions |
Open Journal Systems (RRID:SCR_002642) | OJS | software resource | Open source software made freely available to journals worldwide for the purpose of making open access publishing a viable option for more journals, as open access can increase a journal's readership as well as its contribution to the public good on a global scale. OJS assists with every stage of the refereed publishing process, from submissions through to online publication and indexing. Through its management systems, its finely grained indexing of research, and the context it provides for research, OJS seeks to improve both the scholarly and public quality of refereed research. OJS Features # OJS is installed locally and locally controlled. # Editors configure requirements, sections, review process, etc. # Online submission and management of all content. # Subscription module with delayed open access options. # Comprehensive indexing of content part of global system. # Reading Tools for content, based on field and editors' choice. # Email notification and commenting ability for readers. # Complete context-sensitive online Help support. | journal management, publishing system, publication | is listed by: FORCE11 | Free, Available for download, Freely available | nlx_156071 | SCR_002642 | 2026-08-01 12:01:52 | 1 | ||||||||
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PeptideShaker Resource Report Resource Website 100+ mentions |
PeptideShaker (RRID:SCR_002520) | software resource | Software providing a search engine independent platform for visualization of peptide and protein identification results from multiple search engines, currently supporting X!Tandem, MS-GF+, MS Amanda, OMSSA, MyriMatch, Comet, Tide, Mascot and mzIdentML. By combining the results from multiple search engines, while re-calculating PTM localization scores and redoing the protein inference, PeptideShaker attempts to give you the best possible understanding of your proteomics data. | standalone software, proteomics, mass spectrometry, java, search engine, omssa, xtandem, mascot, ms-gf, msamanda, myrimatch, comet, tide |
is listed by: OMICtools is related to: MS Amanda has parent organization: Google Code |
PMID:34709836 | Free, Available for download, Freely available | OMICS_03347 | http://peptide-shaker.googlecode.com | SCR_002520 | 2026-08-01 12:01:50 | 160 | |||||||
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Memento Resource Report Resource Website 10+ mentions |
Memento (RRID:SCR_002634) | Memento | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. An extension for Chrome to see a version of a resource as it existed at some date in the past, by entering that URI in your browser and by specifying the desired date in a browser plug-in. Or you can actually browse the Web of the past by selecting a date and clicking. Whatever you land upon will be versions of Web resources as they were around the selected date. (This will only work if previous versions are available somewhere on the Web.) | versioning, chrome, firefox, bookmarklet |
is listed by: FORCE11 has parent organization: Los Alamos National Laboratory has parent organization: Old Dominion University; Virginia; USA |
Library of Congress | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156058 | SCR_002634 | 2026-08-01 12:01:52 | 38 |
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