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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MADOKA Resource Report Resource Website 1+ mentions |
MADOKA (RRID:SCR_024522) | data access protocol, software resource, web service | Web server as ultra fast approach for large scale protein structure similarity searching.The upload protein structure file should be in PDB format. Used for searching similar protein structures by aligning input structure with the whole PDB library. | large scale protein structure similarity searching, searching similar protein structures, aligning input structure with whole PDB library, | is listed by: SoftCite | PMID:31870277 | Free, Freely available | SCR_024522 | SciCrunch Registry | 2026-11-07 12:01:15 | 1 | |||||||||
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Partnership for Interdisciplinary Studies of Coastal Oceans Resource Report Resource Website 1+ mentions |
Partnership for Interdisciplinary Studies of Coastal Oceans (RRID:SCR_024637) | PISCO | consortium, data or information resource, organization portal, portal | Academic consortium that conducts research to advance understanding of the coastal ocean within the California Current Large Marine Ecosystem and inform management and policy. | coastal ocean research, California Current Large Marine Ecosystem, management and policy, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.6085 | SCR_024637 | SciCrunch Registry | Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) | 2026-11-07 12:01:18 | 2 | |||||||
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getorf Resource Report Resource Website 1+ mentions |
getorf (RRID:SCR_024691) | data access protocol, software resource, web service | Web application to find and extract open reading frames (ORFs). Used to find and output sequences of open reading frames in one or more nucleotide sequences. | find and extract open reading frames, open reading frames, ORFs, nucleotide sequences, | Free, Freely available | SCR_024691 | SciCrunch Registry | EMBOSS getorf | 2026-11-07 12:01:19 | 5 | ||||||||||
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Noldus: Erasmus Ladder Resource Report Resource Website |
Noldus: Erasmus Ladder (RRID:SCR_024695) | instrument resource | System consists of hardware and software for assessment of motor performance and motor learning in mice. Hardware includes two goal boxes with horizontal ladder in between. Touch sensitive rungs of the ladder make it possible to measure step durations and step types. ErasmusLadder software controls experiments by sending protocol and start command to apparatus. Sessions are performed automatically, and afterwards, data is sent back to software for storage and analysis. | Noldus, motor performance and motor learning in mice assessment, | Restricted | SCR_024695 | SciCrunch Registry | Erasmus Ladder | 2026-11-07 12:01:03 | 0 | ||||||||||
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Focinator Resource Report Resource Website |
Focinator (RRID:SCR_024697) | data processing software, image analysis software, software application, software resource | Open source software tool providing automated analysis of foci images including foci counting and colocalization of foci. Focinator v2-0 is able to perform multi channel analysis of four channels and evaluation of protein-protein colocalization by comparison of up to three foci channels. This enables for example the quantification of foci in cells of specific cell cycle phase. | automated analysis of foci images, foci counting, colocalization of foci, multi channel analysis, evaluation of protein-protein colocalization, | uses: ImageJ | PMID:26238507 PMID:28492345 |
Free,Available for download, Freely available, | SCR_024697 | SciCrunch Registry | Focinator V2 | 2026-11-07 12:01:19 | 0 | ||||||||
|
Open Science Summit Resource Report Resource Website |
Open Science Summit (RRID:SCR_008006) | Open Science Summit | meeting resource, training resource | The objectives of Open Science Summit are to create an annual flagship event and news hub to build and maintain the identity of the international Open Science Movement as well as organize the various sub-communities into an effective, global, socio-technological force for rapid change in science/innovation policy. The Open Science Summit is the first and only event examining the full spectrum of the most crucial policy questions affecting the future of science. We consider the disruptive changes required to improve the functioning of 21st science, including institutional changes, new infrastructure for data driven science, and new practices. Scientists, Hackers, Students, Patients, and Activists, Entrepreneurs, Funders, Citizens should attend. Anyone who cares passionately about unleashing the full potential of Open Science to solve the big problems confronting humanity. Topics include: Synthetic Biology, Open Data, Open Access, Microfinance for Science, Citizen science, DIY Biology, Alternative Funding for Research, Open Source Drug Discovery, The Future of Patents, Accelerating Innovation, Open Genomics/Medicine, and More! | conference | Autodesk Inc. ; Autodesk Research ; Open Society Institute ; BioHub ; Mendeley Research Networks ; University of California Berkeley ; Berkeley Library ; LifeStar Institute World Health Initiative |
nif-0000-07744 | SCR_008006 | SciCrunch Registry | 2026-11-07 12:01:21 | 0 | |||||||||
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GlobalEventList Resource Report Resource Website |
GlobalEventList (RRID:SCR_013960) | meeting resource, training resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March, 4, 2021. A meeting resource which lists current and up-coming scientific and medical events by discipline, location, and date. | meeting resource, event, global, global event, event list |
is listed by: Connected Researchers is related to: Connected Researchers |
THIS RESOURCE IS NO LONGER IN SERVICE | http://www.globaleventslist.elsevier.com | SCR_013960 | SciCrunch Registry | 2026-11-07 12:01:20 | 0 | |||||||||
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brainhack.org Resource Report Resource Website 1+ mentions |
brainhack.org (RRID:SCR_000195) | brainhack.org | data or information resource, portal | Forum for collaborative projects in the field of brain science. Everyone is invited to submit projects, either existing ones that you want to see featured or new ones that you want launch and work on in a collaborative, open way. | magnetic resonance imaging assay, image, fmri, brain, science, neuroimaging, project |
is affiliated with: HBM Hackathon has parent organization: Neuro Bureau |
PMID:27042293 PMID:33932337 |
The community can contribute to this resource | nlx_149390 | SCR_000195 | SciCrunch Registry | BrainHack | 2026-11-07 12:01:05 | 1 | ||||||
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Tissue Engineering Resource Center Resource Report Resource Website 1+ mentions |
Tissue Engineering Resource Center (RRID:SCR_000103) | TERC | data or information resource, organization portal, portal | Biomedical technology research center designed to advance basis and clinical aspects of tissue engineering, to provide training for investigators and dissemination of scientific findings and new techniques. Expertise and facilities are focused on research, problem solving and training for biomedical community through integrated systems approach to challenges in tissue engineering. Mission for TERC is to engineer human tissues for medical impact. Includes Functional human tissue grafts: human tissues for application in regenerative medicine;Human disease models in vitro: in vitro models of human disease to provide new experimental tools to understand progression of disease, effects and mechanisms of drug action; Biological materials research: bioengineering tools for cell biology studies in context of tissue development, regeneration and disease. | tissue engineering, stem cell, tissue graft, tissue development, regeneration, human disease, regenerative medicine, in vitro, disease model, bioengineering |
is listed by: National Institute of Biomedical Imaging and Bioengineering has parent organization: Tufts University; Massachusetts; USA has parent organization: Columbia University; New York; USA |
nlx_152637 | SCR_000103 | SciCrunch Registry | TERC: Tissue Engineering Resource Center | 2026-11-07 12:01:20 | 8 | ||||||||
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IFTI-Mirage Resource Report Resource Website 1+ mentions |
IFTI-Mirage (RRID:SCR_000505) | data or information resource, database, portal | A resource for information pertaining to methodologies, tools and technologies of gene expression. The website offers resources for sequence analysis, database services, and other technologies of gene expression and regulation. | bioinformatics, gene, expression, database, technology, method, tool, sequence, regulation |
is parent organization of: object-oriented Transcription Factors Database is parent organization of: TfSiteScan |
Public, Available to the research community | nlx_19877 | SCR_000505 | SciCrunch Registry | Institute for Transcriptional Informatics-Molecular Informatics Resource for the Analysis of Gene Expression, MIRAGE | 2026-11-07 12:01:06 | 5 | ||||||||
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NIH Office of Research Services Resource Report Resource Website |
NIH Office of Research Services (RRID:SCR_000987) | ORS, | data or information resource, funding resource, portal | The Office of Research Services (ORS) provides support to the NIH research mission by planning, directing and delivering scientific and regulatory activities, public safety, security, and services for the NIH community. | office research, ors, nih ors, nih research services, ors planning ors directing, ors public safety, ors security | has parent organization: National Institutes of Health | nlx_inv_1005067 | SCR_000987 | SciCrunch Registry | Office of Research Services - Serving the NIH Community, Office of Research Services | 2026-11-07 12:01:19 | 0 | ||||||||
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Franklin Resource Report Resource Website |
Franklin (RRID:SCR_024670) | data or information resource, knowledge base | Connectivity hub across medical genetics domain. Network of genomic information. Supports all vendors and workflows and thus enables any genetic professional to deliver more accurate, more actionable data insights. | medical genetics domain, genomic information network, genomic data | Restricted | SCR_024670 | SciCrunch Registry | 2026-11-07 12:01:18 | 0 | |||||||||||
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MapMyCells Resource Report Resource Website 50+ mentions |
MapMyCells (RRID:SCR_024672) | algorithm resource, software application, software resource, web application | MapMyCells maps single cell and spatial transcriptomics data sets to massive, high-quality, and high-resolution cell type taxonomies. It enables speeding up the creation of brain reference atlases by facilitating the integration of datasets from the scientific community with a shared reference. MapMyCells is part of the growing Brain Knowledge Platform. Its key advantage is scale: researchers can provide up to 327 million cell-gene pairs from their own data, a huge leap forward for working with whole-brain datasets. Allen Institute and its collaborators continue to add new reference taxonomies and algorithms to MapMyCells. | mapping of single cell and spatial transcriptomics data, mapping to whole mouse brain taxonomy, mapping to human brain taxonomy, correlation mapping, hierarchical mapping, label transfer |
has parent organization: Allen Institute is organization facet of: BICCN |
NIMH U24MH130918; Paul G. Allen Foundation |
Free, Freely available | https://knowledge.brain-map.org/mapmycells/process/, https://portal.brain-map.org/atlases-and-data/bkp/mapmycells/mapmycells-use-case-single-cell-genomics | SCR_024672 | SciCrunch Registry | Map My Cells, Allen MapMyCells | 2026-11-07 12:01:02 | 60 | |||||||
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Philips: FEI CM120 BioTwin Transmission Electron Microscope Resource Report Resource Website |
Philips: FEI CM120 BioTwin Transmission Electron Microscope (RRID:SCR_024709) | instrument resource | Transmission electron microscope with maximum acceleration voltage of 120 kv.Microscope primarily used for sample screening. | Microscope, Philips, FEI, instrument, Transmission Electron Microscope, sample screening, | Restricted | Model_Number_CM120 | SCR_024709 | SciCrunch Registry | , FEI CM120 Biotwin, FEI/PHILIPS CM120 TEM, Philips/FEI CM120 Bio Twin Transmission Electron Microscope, Philips CM120 Biotwin Lens | 2026-11-07 12:01:19 | 0 | |||||||||
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Grantees Meeting for NITRC Resource Report Resource Website |
Grantees Meeting for NITRC (RRID:SCR_000419) | data or information resource, portal, project portal | This project is meant for planning the NITRC Grantee meetings. A website for organizing meetings for the Neuroimaging Informatics Tools and Resources Clearinghouse, to facilitate participants meeting one another, and promote discussion of common interests and collaboration. | meeting, neuroimaging, nitrc, informatics, tools, collaboration, discussion | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Freely available | nlx_155875, SCR_014081 | http://www.nitrc.org/plugins/mwiki/index.php/nihgrantees:2009Meeting | SCR_000419 | SciCrunch Registry | 2026-11-07 12:01:21 | 0 | ||||||||
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University of Texas Health Science at Houston Center for SUDEP Research Resource Report Resource Website |
University of Texas Health Science at Houston Center for SUDEP Research (RRID:SCR_024700) | data access protocol, data or information resource, organization portal, portal, software resource, web service | NIH funded center to provide system for sharing multimodal epilepsy data for Sudden Unexpected Death in Epilepsy. Modality Epilepsy Data Capture and Integration System (MEDCIS) is cross cohort query interface for SUDEP (Sudden Unexpected Death in EPilepsy) research. | sharing multimodal epilepsy data, sudden unexpected death, epilepsy, MEDCIS, Modality Epilepsy Data Capture and Integration System, cross cohort query interface, | epilepsy | NINDS R01NS116287; NINDS R01NS126690; NINDS U01NS090405; NINDS U01NS090408 |
PMID:25954436 PMID:36059922 |
Restricted | SCR_024700 | SciCrunch Registry | , Center for SUDEP Research, Center for Sudden Unexpected Death in Epilepsy Research | 2026-11-07 12:01:20 | 0 | |||||||
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Multitron: Incubation Shaker Resource Report Resource Website |
Multitron: Incubation Shaker (RRID:SCR_024668) | instrument resource | Shaker for cultivation of microorganisms and cell cultures provides homogeneous conditions for cultivation up to 63 liters or 23 000 batches in parallel in less than square meter of space. | Shaker, cultivation of microorganisms and cell cultures, | SCR_024668 | SciCrunch Registry | Multitron Standard Incubation Shaker | 2026-11-07 12:01:02 | 0 | |||||||||||
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Project Halo Resource Report Resource Website 1+ mentions |
Project Halo (RRID:SCR_000136) | Project Halo | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Project Halo is a staged, long-range research effort by Vulcan Inc. towards the development of a Digital Aristotlea reasoning system capable of answering novel questions and solving advanced problems in a broad range of scientific disciplines and related human affairs. The project focuses on creating two primary functions: a tutor capable of instructing and assessing students in those subjects, and a research assistant with broad, interdisciplinary skills to help scientists and others in their work. Vulcan began work towards this ambitious vision in 2003 with the Halo Pilot a six-month effort to investigate the feasibility of creating a scientific knowledge base capable of answering novel questions from the AP (1st year college level) chemistry test. Three teams SRI International, Cycorp, and Ontoprise developed knowledge bases, for a limited section of an AP-chemistry syllabus, that were able to correctly answer 40 to 50 percent of the associated questions from the AP test. Since 2004, Project Halo has worked to improve these systems, with an emphasis on enabling knowledge entry by domain experts, instead of specialists in artificial intelligence software. In 2004, Vulcan began the development of Automated User-Centered Reasoning and Acquisition System (AURA), by SRI, that enables domain experts (graduate students in Biology, Chemistry, and Physics) to enter knowledge from introductory science textbooks. In 2006, an evaluation of AURA showed that students could create AURA knowledge bases that correctly answered 40 percent of the questions on a limited AP exam. In 2008, the next evaluation demonstrated an improvement of that score to 70 percent correct. In parallel, Project Halo has sponsored Ontoprise to develop semantic extensions to MediaWiki, the software that Wikipedia runs on. Ontoprise has developed a set of Semantic MediaWiki (SMW)+ extensions to MediaWiki that provide a community-based environment for authoring ontologies and creating semantically enhanced wikis. SMW+ has been widely used and is being applied in project management, enterprise collaboration and knowledge management, business intelligence, and the management of large terminology sets. In 2007, Vulcan began a new effort, Halo Advanced Research (HalAR), to address the difficult knowledge representation and reasoning (KR) challenges that prevent the realization of Digital Aristotle. This effort has produced a new semantic rule language and reasoning system, Semantic Inferencing on Large Knowledge (SILK), which includes major advances, including for default and higher-order reasoning over the web. | project, tutor, research assistant, science, knowledge-base, semantic mediawiki, ontology, textbook, book, training material, digital book, data mining, biology | has parent organization: Stanford Research Institute International | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144483 | SCR_000136 | SciCrunch Registry | 2026-11-07 12:01:21 | 1 | ||||||||
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Ensembl Covid-19 Resource Report Resource Website 1+ mentions |
Ensembl Covid-19 (RRID:SCR_024704) | data or information resource, disease-related portal, portal, topical portal | Ensembl SARS-Cov2 data portal. | Ensembl, SARS-Cov2, Covid -19, data | is listed by: Ensembl | Covid -19 | Free, Freely available | SCR_024704 | SciCrunch Registry | 2026-11-07 12:01:19 | 4 | |||||||||
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PyPOLAR Resource Report Resource Website 1+ mentions |
PyPOLAR (RRID:SCR_024681) | data processing software, image analysis software, software application, software resource, standalone software | Software Python based app for analyzing polarization resolved microscopy data to measure molecular orientation and order in biological samples. | analyzing polarization resolved microscopy data, measure molecular orientation and order, biological samples, | Free, Available for download, Freely available | https://www.fresnel.fr/polarimetry | SCR_024681 | SciCrunch Registry | 2026-11-07 12:01:20 | 1 |
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