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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cystic Fibrosis Center - University of California San Francisco Resource Report Resource Website |
Cystic Fibrosis Center - University of California San Francisco (RRID:SCR_015398) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center that focuses on developing novel therapies for cystic fibrosis, enhancing research projects examining the mechanisms of the disease, and developing new small-molecule therapies that can be translated into the clinic. | cystic fibrosis therapy, cystic fibrosis mechanism, cystic fibrosis research, small molecule therapy |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at San Francisco; California; USA is organization facet of: Cystic Fibrosis Research and Translation Centers |
Cystic Fibrosis | NIDDK P30DK072517 | Available to the research community | SCR_015398 | SciCrunch Registry | 2026-11-07 12:00:20 | 0 | ||||||||
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MyBioSource Resource Report Resource Website 100+ mentions |
MyBioSource (RRID:SCR_013493) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152416 | SCR_013493 | SciCrunch Registry | MyBioSource Inc., MyBioSource.com, MyBioSource Inc | 2026-11-07 12:00:50 | 184 | |||||||||||
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Cogent 2000 Resource Report Resource Website 100+ mentions |
Cogent 2000 (RRID:SCR_015672) | data processing software, signal processing software, software application, software resource, software toolkit | MATLAB Toolbox for presenting stimuli and recording responses with precise timing. It also provides additional utilities for the manipulation of sound, keyboard, mouse, joystick, serial port, parallel port, subject responses and physiological monitoring hardware. | matlab, timing, physiological monitoring, subject response, stimulus presenting, response recording | has parent organization: Wellcome Trust | Free, Available for download, Acknowledgment requested, Account required, Demo available | SCR_015672 | SciCrunch Registry | Cogent | 2026-11-07 12:00:39 | 224 | |||||||||
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HBP: Healthy Brain Project Resource Report Resource Website |
HBP: Healthy Brain Project (RRID:SCR_013137) | HBP | data or information resource, disease-related portal, portal, research forum portal, topical portal | Research forum portal to address brain status by acquiring comprehensive, multimodal data from healthy humans across the lifespan to characterize brain status, assess its change over time, and associate composite descriptors of brain status. Specifically, the measurements are acquired noninvasively by existing neuroimaging technologies (structural MRI, functional MRI, magnetic resonance spectroscopy, diffusion MRI, and magnetoencephalography); in addition, genetic, cognitive, language, and lifestyle data are acquired. Goals: * Derive the Brain Health Index- An integrative assessment of brain status derived from multimodal measurements of brain structure, function, and chemistry. * Continue acquiring data to construct the first-ever databank on brain, cognitive, language and genetic measurements for healthy people across the lifespan. * Provide a novel and unique dataset by which to: characterize brain status, assess its change over time, and associate it with genetic makeup, cognitive function, and language abilities. * Forecast future brain health and disease based on current measurements and guide physicians towards new interventions and evaluate interventions as they develop. * Extend to siblings and other family members to further assess the genetic influences and inheritability. | cognition, language, genetic, cognitive, brain, structure, function, longitudinal, multimodal, neuroimaging, adult human, late adult human, neurological exam, neuropsychological exam, cognitive assessment, structured interview, questionnaire, mental health status, structural mri, fmri, mr spectroscopy, diffusion mri, meg, dna, genetic assessment, montreal cognitive assessment, 3ms, mmse, language assessment, lifestyle, controlled oral word association test | has parent organization: University of Minnesota Twin Cities; Minnesota; USA | Aging, Healthy | nlx_153925 | SCR_013137 | SciCrunch Registry | Healthy Brain Project, Minnesota Women Healthy Brain Project, Women Healthy Brain Project, Minnesota Healthy Brain Project | 2026-11-07 12:00:49 | 0 | |||||||
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AmplifX Resource Report Resource Website 50+ mentions |
AmplifX (RRID:SCR_014465) | data analysis software, data processing software, software application, software resource | A software for managing, testing, and drawing primers. The software can locate primers for target sequences, calculate the quality score, predict amplified fragments and dimers, and create graphic representations of the primers. | primer design, target sequences, amplification, graphic representation, data analysis software | SCR_014465 | SciCrunch Registry | 2026-11-07 12:00:20 | 96 | ||||||||||||
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Cytoskeleton Resource Report Resource Website 1000+ mentions |
Cytoskeleton (RRID:SCR_013532) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152338 | SCR_013532 | SciCrunch Registry | Cytoskeleton inc. | 2026-11-07 12:00:19 | 2691 | |||||||||||
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Scaffold Proteome Software Resource Report Resource Website 100+ mentions |
Scaffold Proteome Software (RRID:SCR_014345) | data analysis software, data processing software, software application, software resource | Software for MS/MS proteomic experiments to compare samples, identify biological relevance, and identify isoforms and protein PTMs. These proteins can be classified based on molecular function or organelle. Users can investigate spectrum details and counts, as well as use high through-put batch processing. Tutorials and a free trial are available through the main site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ms/ms, proteome, isoform, protein ptm, spectrum, mass spectrometry | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014345 | SciCrunch Registry | Scaffold | 2026-11-07 12:00:38 | 116 | ||||||||||
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Human Reference Protein Interactome Project Resource Report Resource Website 10+ mentions |
Human Reference Protein Interactome Project (RRID:SCR_015670) | HuRI | data or information resource, database, portal, project portal, software resource, web application | Project portal for the Human Reference Protein Interactome Project, which aims generate a first reference map of the human protein-protein interactome network by identifying binary protein-protein interactions (PPIs). It achieves this by systematically interrogating all pairwise combinations of predicted human protein-coding genes using proteome-scale technologies. | protein interactome, protein-protein interaction, ppi, pairwise combination, proteome, human reference | NHGRI R01/U01HG001715; NHGRI P50HG004233; NHLBI U01HL098166; NHLBI U01HL108630; NCI U54CA112962; NCI R33CA132073; NIH RC4HG006066; NICHD ARRA R01HD065288; NICHD ARRA R21MH104766; NICHD ARRA R01MH105524; NIMH R01MH091350; NSF CCF-1219007; NSERC RGPIN-2014-03892 |
PMID:25416956 | Freely Available, Free, Available for download | SCR_015670 | SciCrunch Registry | HuRI: The Human Reference Protein Interactome Mapping Project | 2026-11-07 12:00:21 | 20 | |||||||
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TetraScience Resource Report Resource Website |
TetraScience (RRID:SCR_013977) | data acquisition software, data management software, data processing software, software application, software resource | A software provider which supplies researchers with software that enables remote monitoring and management of experiments. TetraScience provides software for managing lab cameras, sensors, electrical switches, adapters, and timers. Users are notified by text or email of lab proceedings and alerts. | remote management, management tool, data aacquisiton, data management, software |
is listed by: Connected Researchers is related to: Connected Researchers |
SCR_013977 | SciCrunch Registry | 2026-11-07 12:00:43 | 0 | |||||||||||
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ASaiM Resource Report Resource Website 1+ mentions |
ASaiM (RRID:SCR_015878) | data analysis software, data processing software, software application, software resource | Software that analyzes intestinal microbiota data. This environment is composed of a framework to process and analyze microbiota data from raw sequences to taxonomic and functional assignations. | metagenomic, galaxy, microbiota, metatranscriptomic, metataxonomic, | Open source, Free, Available for download, Tutorial available | https://github.com/asaim | SCR_015878 | SciCrunch Registry | ASaiM: Auvergne Sequence analysis of intestinal Microbiota, Auvergne Sequence analysis of intestinal Microbiota, ASaiM (Auvergne Sequence analysis of intestinal Microbiota) | 2026-11-07 12:00:46 | 2 | |||||||||
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Signal Resource Report Resource Website 500+ mentions |
Signal (RRID:SCR_014276) | data acquisition software, data analysis software, data processing software, software application, software resource | A sweep-based data acquisition and analysis software package. Its uses range from a simple storage oscilloscope to complex applications requiring stimulus generation, data capture, control of external equipment and custom analysis. A built-in script language automates tasks and provides additional tools for custom analyses and applications. Signal includes functions for specific application areas, including dynamic clamp, whole cell and patch clamp electrophysiology, and evoked response including control of magnetic and other stimulus devices. Video tutorials and a demo version of Signal is available on the main page. | sweep based, data acquisition software, data analysis software, | Pay for product | SCR_014276 | SciCrunch Registry | 2026-11-07 12:00:38 | 737 | |||||||||||
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Psykinematix Resource Report Resource Website 10+ mentions |
Psykinematix (RRID:SCR_014830) | data acquisition software, data analysis software, data processing software, software application, software resource, standalone software | Standalone solution dedicated to Visual Psychophysics running on Mac OS X. Psykinematix runs standard psychophysical protocols, presents complex stimuli, collects subject's responses, and analyzes results on the fly. It consists of a unique OpenGL-based software package that does not require any programming skill to create and run complex experiments. | psychophysics, visual psychophysics, standalone, mac, data analysis, data acquisition, experiment | Demo is available, Available for download, License required | SCR_014830 | SciCrunch Registry | 2026-11-07 12:00:45 | 21 | |||||||||||
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National Institute on Drug Abuse Center for Genetic Studies Resource Report Resource Website 1+ mentions |
National Institute on Drug Abuse Center for Genetic Studies (RRID:SCR_013061) | NIDA Center for Genetic Studies | data or information resource, data repository, data set, service resource, storage service resource | Site for collection and distribution of clinical data related to genetic analysis of drug abuse phenotypes. Anonymous data on family structure, age, sex, clinical status, and diagnosis, DNA samples and cell line cultures, and data derived from genotyping and other genetic analyses of these clinical data and biomaterials, are distributed to qualified researchers studying genetics of mental disorders and other complex diseases at recognized biomedical research facilities. Phenotypic and Genetic data will be made available to general public on release dates through distribution mechanisms specified on website. | drug abuse, family, family structure, genetic analysis, genetics, addiction, age, biomaterial, cell line, citation, clinical, clinical status, data, diagnosis, dna, genotyping, human, mental disorder, mutation analysis, phenotype, publications, sex, clinical data, genotype, gene, GWAS |
is recommended by: National Library of Medicine is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: NIH Data Sharing Repositories has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Rutgers University; New Jersey; USA |
NIDA ; NIH Blueprint for Neuroscience Research |
Free, Freely available | nif-0000-00181 | https://zork5.wustl.edu//nida/ | http://zork.wustl.edu/nida/ | SCR_013061 | SciCrunch Registry | National Institute of Drug Abuse (NIDA) Human Genetics Initiative, NIDA Center for Genetic Studies | 2026-11-07 12:00:18 | 7 | ||||
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NIH-CIDI Lung Segmentation Tool Resource Report Resource Website 1+ mentions |
NIH-CIDI Lung Segmentation Tool (RRID:SCR_014150) | data processing software, image analysis software, segmentation software, software application, software resource | A segmentation tool for the segmentation of a lung from CT images. The sofware can be run in two modes: fully automatic and semi-automatic with manual seeding by the user. The software also allows the user to perform basic filtering operations and manual correction to the segmentation. The VTK-based rendering implementation, along with option to view in axial, coronal, and sagittal, provides the user with better visualization of the segmented lung. | segmentation software, lung, ct image, visualization |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: National Institutes of Health |
PMID:25570151 | Open source | SCR_014150 | SciCrunch Registry | CIDI-lung-seg, CIDI Lung Seg | 2026-11-07 12:00:50 | 1 | ||||||||
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ImmunoStar Resource Report Resource Website 500+ mentions |
ImmunoStar (RRID:SCR_013473) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152388 | SCR_013473 | SciCrunch Registry | Immunonuclear, Diasorin, Incstar, Immuno Nuclear, ImmunoStar inc. | 2026-11-07 12:00:37 | 661 | |||||||||||
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xFITOM Resource Report Resource Website 1+ mentions |
xFITOM (RRID:SCR_014445) | data analysis software, data processing software, sequence analysis software, software application, software resource, standalone software | A fully customizable program that uses a graphical user interface to locate transcription factor-binding sites in genomic sequences. xFITOM scans DNA or RNA sequences for putative binding sites as defined by a collection of aligned known sites, a consensus sequence in IUPAC degenerate-base format, or a combination of the two. | transcription factor, binding site, information theory, customizable program, sequence analysis software |
uses: GenBank is related to: CollecTF |
PMID:21346861 | Available for download, Acknowledgement requested | http://www.mybiosoftware.com/fitom-1-0-detection-binding-sites-dna-rna-sequences.html | compbio.umbc.edu/Software/xFITOM/ http://research.umbc.edu/~erill/ | SCR_014445 | SciCrunch Registry | 2026-11-07 12:00:50 | 7 | |||||||
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PLINK/SEQ Resource Report Resource Website 50+ mentions |
PLINK/SEQ (RRID:SCR_013193) | software application, software library, software resource, software toolkit | An open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing projects, particularly whole-exome and whole-genome studies. However, the library could in principle be applied to other types of genetic studies, including whole-genome association studies of common SNPs. (entry from Genetic Analysis Software) | gene, genetic, genomic, c/c++, r, macos, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: PLINK has parent organization: Harvard University; Cambridge; United States |
Open unspecified license | nlx_154213, biotools:plink-seq | https://bio.tools/plink-seq | SCR_013193 | SciCrunch Registry | 2026-11-07 12:00:18 | 77 | ||||||||
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Pennsylvania State University SLEIC Resource Report Resource Website 1+ mentions |
Pennsylvania State University SLEIC (RRID:SCR_014922) | PSU SLEIC | access service resource, service resource | Imaging center dedicated to fostering research in the social, behavioral, biological, engineering, and materials sciences where imaging methodologies play a central role. The SLEIC provides the Penn State research community with instrumentation, technological and substantive expertise, educational opportunities, and financial support for conducting magnetic resonance imaging (MRI) and electrophysiology (EEG, ERP) experiments. | access service resource, imaging center, imaging, social science, behavioral science, engineering, material science, biological science | is hosted by: Pennsylvania State University | PMID:27993674 | Available to affiliated researchers | SCR_014922 | SciCrunch Registry | Pennsylvania State University Social Life and Engineering Imaging Center, Penn State SLEIC | 2026-11-07 11:58:23 | 1 | |||||||
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SPEX2 Resource Report Resource Website 1+ mentions |
SPEX2 (RRID:SCR_014923) | data analysis software, data processing software, sequence analysis software, software application, software resource | Automatic software program for profiling spatial gene expression patterns from Fly embryo ISH images. It utilizes image-based genome-scale profiling of whole-body mRNA patterns. | software, spatial gene expression, fly, embryo, extraction, mrna, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Carnegie Mellon University; Pennsylvania; USA |
PMID:20529936 | biotools:spex2 | https://bio.tools/spex2 | SCR_014923 | SciCrunch Registry | 2026-11-07 11:58:19 | 1 | ||||||||
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University of California San Diego - University of California Los Angeles Diabetes Research Center Resource Report Resource Website |
University of California San Diego - University of California Los Angeles Diabetes Research Center (RRID:SCR_015100) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center across five institutions for clinical research in diabetes. Collaborators include UC San Diego's School of Medicine, Salk Institute, Cedars-Sinai Medical Center, UC Los Angeles' School of Medicine, and LA Biomedical Research Center. | diabetes research, research collaboration, research network, metabolic research, southern california |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK063491 | Available to the research community | http://derc.ucsd.edu/index.html | SCR_015100 | SciCrunch Registry | 2026-11-07 11:58:24 | 0 |
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