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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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University of Florida Department of Pharmacology and Therapeutics Resource Report Resource Website |
University of Florida Department of Pharmacology and Therapeutics (RRID:SCR_006429) | UF Department of Pharmacology and Therapeutics, UF Department of Pharmacology & Therapeutics | data or information resource, department portal, organization portal, portal | Department fosters independent but interactive research programs in the areas of neuro-pharmacology, cancer pharmacology, cardiovascular pharmacology, retinopathy, inflammation, obesity, aging and gene therapy. A significant number of faculty are actively involved in new drug development. Extramural research support is provided from federal, private and industrial sources.Trainees include undergraduate and graduate students, postdoctoral fellows and M.D., Ph.D. students. Graduate education and training is through the College of Medicine Interdisciplinary Program in Biomedical Sciences. Professional education includes medical, physician assistants and dental students. | has parent organization: University of Florida College of Medicine; Florida; USA | nif-0000-02174 | SCR_006429 | SciCrunch Registry | University of Florida Department of Pharmacology Therapeutics, UF Department of Pharmacology Therapeutics, University of Florida Department of Pharmacology and Therapeutics | 2026-11-07 12:00:33 | 0 | |||||||||
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University of Kentucky Alzheimer's Disease Center Resource Report Resource Website |
University of Kentucky Alzheimer's Disease Center (RRID:SCR_008767) | UK-ADC | data or information resource, disease-related portal, portal, topical portal | Alzheimer's Disease Center that serves as the focal point for all Alzheimer's disease-related activities at the University of Kentucky and the Commonwealth of Kentucky providing an environment and core resources that catalyze innovative research, outreach, education, and clinical programs. Their ADC plans to build on its historic strengths and capitalize on emerging opportunities to provide an infrastructure that supports research designed to translate knowledge into therapeutic strategies for AD. They focus on two interrelated themes: Transitions and Translation. Their overall emphasis is to more effectively bridge the gap between basic research and clinical studies by facilitating translational efforts. They also carefully characterize transitions across the spectrum of cognitive impairment (normal/ preclinical AD/ MCI/ dementia), with focus on definition of early disease, and continue to support neuropathology as the bedrock of our center. The Alzheimer Disease Center's 2006-2011 grant award from the National Institute on Aging consists of five cores: * Administrative Core * Clinical Core * Biostatistics and Data Management Core * Neuropathology Core * Education & Information Transfer Core | late adult human, brain, memory, clinic, alzheimer |
has parent organization: Sanders Brown Center on Aging has parent organization: University of Kentucky; Kentucky; USA is parent organization of: University of Kentucky's Alzheimer's Disease Center |
Cognitive impairment, Alzheimer's disease, Aging, Mild cognitive impairment, Dementia | NIA | nlx_144058 | http://www.mc.uky.edu/coa/clinicalcore/ADC%20home%20page.html | SCR_008767 | SciCrunch Registry | UK Alzheimer's Disease Center, University of Kentucky Alzheimer's Disease Center, Alzheimer's Disease Center at the University of Kentucky | 2026-11-07 12:00:16 | 0 | |||||
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SPM Resource Report Resource Website 5000+ mentions Issue |
SPM (RRID:SCR_007037) | SPM | data analysis software, data processing software, image analysis software, software application, software resource | Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG. | analysis, brain, imaging, data, sequence, fMRI, PET, SPECT, EEG, MEG, bio.tools |
uses: Neuroimaging Data Model uses: imcalc: SPM batch image calculator is used by: rsfMRI_fconn calculation is used by: Automatic Analysis is used by: auto_acpc_reorient is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: 3DVC is listed by: Debian is listed by: bio.tools is listed by: SoftCite is affiliated with: Clinical Toolbox for SPM is affiliated with: Statistical non-Parametric Mapping is related to: WFU Biological Parametric Mapping Toolbox is related to: vis: SPM Visualized Statistics toolbox is related to: LEAD-DBS is related to: CCHMC Pediatric Brain Templates is related to: IBMA toolbox is related to: ArtRepair for robust fMRI is related to: ASL data processing tool box is related to: BrainVISA / Anatomist is related to: MRIcro Software is related to: xjView: A Viewing Program For SPM is related to: BrainMagix SPM Viewer is related to: MarsBaR region of interest toolbox for SPM is related to: NIRS-SPM is related to: SPM SS - fMRI functional localizers is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox is related to: Dementia-specific FDG PET Template for SPM analyses is related to: SPM Anatomy Toolbox is related to: MIPAV: Medical Image Processing and Visualization is related to: MATLAB is related to: hMRI-toolbox is related to: Sandwich Estimator Toolbox has parent organization: University College London; London; United Kingdom is required by: MRTool provides: TSDiffAna has plug in: ICN_Atlas works with: UManitoba - JHU Functionally Defined Human White Matter Atlas works with: NIAG Addiction Data works with: ICN_Atlas works with: spm_auto_reorient_coregister works with: Computational Anatomy Toolbox for SPM works with: FieldTrip works with: POAS4SPM |
Free, Available for download, Freely available | biotools:SPM | https://github.com/spm/spm12, https://bio.tools/SPM | https://www.fil.ion.ucl.ac.uk/spm/ | SCR_007037 | SciCrunch Registry | Statistical Parametric Mapping, SPM5, SPM2, SPM12, Statistical Parametric Mapping Software, SPM99, SPM8, SPM, SPM96 | 2026-11-07 12:00:37 | 8748 | |||||
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MUSCLE Resource Report Resource Website 10000+ mentions |
MUSCLE (RRID:SCR_011812) | MUSCLE | alignment software, analysis service resource, data analysis service, data analysis software, data processing software, image analysis software, production service resource, service resource, software application, software resource | Multiple sequence alignment method with reduced time and space complexity.Multiple sequence alignment with high accuracy and high throughput. Data analysis service for multiple sequence comparison by log- expectation. | bio.tools |
is used by: TranslatorX is listed by: OMICtools is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: PREFAB has parent organization: European Bioinformatics Institute |
PMID:15034147 PMID:15318951 DOI:10.1093/nar/gkh340 |
biotools:muscle, OMICS_00982 | https://bio.tools/muscle, http://www.drive5.com/muscle/, https://www.drive5.com/muscle/manual/, https://www.drive5, http://bioconductor.org/packages/release/bioc/html/muscle.html.com/muscle/manual/install.html, https://sources.debian.org/src/muscle/ | SCR_011812 | SciCrunch Registry | MUltiple Sequence Comparison by Log- Expectation | 2026-11-07 12:00:49 | 17169 | ||||||
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National Resource for Aplysia Resource Report Resource Website 10+ mentions |
National Resource for Aplysia (RRID:SCR_008361) | National Resource for Aplysia | biomaterial supply resource, material resource, organism supplier | Center where Aplysia californica are cultured and raised for research purposes. Aplysia from the facility serve in research on genomics, human brain function, toxicology for developmental studies, natural products, chemistry for isolation of novel anti-tumor and antibacterial compounds, in the study of transport by digestive tissues and have potential for use in studies of substance addiction and nerve senescence and regeneration. | disease, genomics, aplysia californica, research, brain | has parent organization: University of Miami; Florida; USA | NCRR ; OD P40 OD010952 |
nif-0000-25472 | http://aplysia.miami.edu/ | SCR_008361 | SciCrunch Registry | 2026-11-07 12:00:39 | 14 | |||||||
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MoTrak Head Motion Tracking System Resource Report Resource Website 1+ mentions |
MoTrak Head Motion Tracking System (RRID:SCR_009607) | MoTrak | resource, software resource | Designed for use in an MRI simulator, MoTrak software uses Ascension Technology?s Flock of Birds. The sensor attaches to the subject?s head and determines the position of the head in space relative to the transmitter. The sensor records angular rotations as well as positional displacements from an initially calibrated position. This information is displayed and logged by the program in real-time, allowing observation of head motion in an MRI simulator. In the simulator, the participant can simultaneously be habituated to the MRI environment, while being trained to remain still via feedback from the MoTrak system. | experiment control, hardware, microsoft, magnetic resonance, training, win32 (ms windows), windows, windows vista, windows xp, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | nlx_155815 | http://www.nitrc.org/projects/motrak | SCR_009607 | SciCrunch Registry | MoTrak - Head Motion Tracking System | 2026-11-07 12:00:40 | 3 | |||||||
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neXtProt Resource Report Resource Website 100+ mentions |
neXtProt (RRID:SCR_008911) | data or information resource, database, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2025. Human protein knowledge platform. Knowledge platform for human proteins selects and filters high throughput data pertinent to human proteins from UniProtKB. Extends UniProtKB/Swiss-Prot annotations for human proteins to include several new data types. | Protein, proteomics, sirna, 3d, pathway, variant, protein-protein interaction, protein-drug interaction, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: UniProtKB has parent organization: SIB Swiss Institute of Bioinformatics |
SIB ; Swiss Commission for Technology and Innovation |
PMID:22139911 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:nextprot, nlx_151482 | https://bio.tools/nextprot | SCR_008911 | SciCrunch Registry | 2026-11-07 12:00:48 | 177 | ||||||
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Families of SMA Resource Report Resource Website 1+ mentions |
Families of SMA (RRID:SCR_010618) | FSMA | data or information resource, disease-related portal, funding resource, portal, topical portal | Families of Spinal Muscular Atrophy is dedicated to creating a treatment and cure by: - Funding and advancing a comprehensive research program; - Supporting SMA families through networking, information and services; - Improving care for all SMA patients; - Educating health professionals and the public about SMA; - Enlisting government support for SMA; - Embracing all touched by SMA in a caring community. Our vision is a world where Spinal Muscular Atrophy is treatable and curable. | spinal muscular atrophy | nlx_55141 | SCR_010618 | SciCrunch Registry | Families of Spinal Muscular Atrophy | 2026-11-07 12:00:41 | 5 | |||||||||
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BrainNet Viewer Resource Report Resource Website 500+ mentions |
BrainNet Viewer (RRID:SCR_009446) | BrainNet Viewer | data processing software, data visualization software, software application, software resource | Aa brain network visualization tool, which can help researchers to visualize structural and functional connectivity patterns from different levels in a quick, easy, and flexible way. | linux, macos, matlab, microsoft, magnetic resonance, posix/unix-like, visualization, win32 (ms windows), windows | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License | nlx_155589 | SCR_009446 | SciCrunch Registry | 2026-11-07 12:00:48 | 678 | ||||||||
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CERMINE Resource Report Resource Website 1+ mentions |
CERMINE (RRID:SCR_008993) | CERMINE | analysis service resource, data analysis service, production service resource, service resource, software application, software library, software resource, software toolkit, text extraction software | Java library and a web service for extracting metadata and content from scientific articles in born-digital form. The system analyses the entire content of a PDF file containing a publication and attempts to extract information such as: the title of the article, journal information (title, etc.), bibliographic information (volume, issue, page numbers, etc.), authors and affiliations, keywords, abstract, bibliographic references and structured sections hierarchy. | java library, java, metadata extraction, page segmentation, content classification, bibliographic reference parsing, parse, extraction system, pdf |
is used by: Paperity is listed by: FORCE11 has parent organization: University of Warsaw; Warsaw; Poland |
National Centre for Research and Development Poland SP/I/1/77065/10 | GNU Affero General Public License, v3 | nlx_152512 | SCR_008993 | SciCrunch Registry | CERMINE - Content ExtRactor and MINEr, Content ExtRactor and MINEr | 2026-11-07 12:00:39 | 5 | ||||||
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Human Developmental Anatomy Ontology timed version Resource Report Resource Website |
Human Developmental Anatomy Ontology timed version (RRID:SCR_010338) | EHDA | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once. | obo | is listed by: BioPortal | nlx_157431 | SCR_010338 | SciCrunch Registry | 2026-11-07 12:00:40 | 0 | |||||||||
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Genetic Resources Core Facility Resource Report Resource Website 1+ mentions |
Genetic Resources Core Facility (RRID:SCR_010581) | analysis service resource, biomaterial analysis service, material analysis service, production service resource, service resource | Makes DNA sequencing services, Real Time PCR access and custom DNA products available to scientists. It provides automated fluorescent sequencing and oligonucleotides to the Hopkins Community. Using the JHU Finch Server facility staff capture orders, to distribute and store data indefinitely. Data produced using the Applied Biosystems 3730xl DNA Analyzer is then made available for download, for online or offline viewing, and for editing through the conveniences of the web-based JHU Finch Server. The facility also offers oligonucleotides through Sigma-Genosys. | has parent organization: Johns Hopkins University; Maryland; USA | nlx_43888 | http://www.daf.jhmi.edu/index.html | SCR_010581 | SciCrunch Registry | Core DNA Analysis Facility | 2026-11-07 12:00:17 | 2 | |||||||||
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Human Physiology Simulation Ontology Resource Report Resource Website |
Human Physiology Simulation Ontology (RRID:SCR_010340) | HUPSON | controlled vocabulary, data or information resource, ontology | Ontology as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles. | owl | is listed by: BioPortal | nlx_157434 | SCR_010340 | SciCrunch Registry | 2026-11-07 12:00:17 | 0 | |||||||||
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Logical Observation Identifier Names and Codes Resource Report Resource Website 1+ mentions |
Logical Observation Identifier Names and Codes (RRID:SCR_010341) | LOINC | controlled vocabulary, data or information resource, ontology | Ontology of logical observation identifier names and codes (LOINC); Version 2.26; January 2, 2009 | umls | is listed by: BioPortal | nlx_157460 | SCR_010341 | SciCrunch Registry | 2026-11-07 12:00:36 | 1 | |||||||||
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UC Davis Genome Center Labs and Facilities Resource Report Resource Website 1+ mentions |
UC Davis Genome Center Labs and Facilities (RRID:SCR_012480) | UCD Genome Center Labs & Facilities, UCD Genome Center Labs and Facilities | access service resource, core facility, data or information resource, organization portal, portal, service resource, training service resource | Genome Center uses technologies to understand how heritable genetic information of diverse organisms functions in health and disease. Provides research facilities, service cores, and staff for genomics research and training. Core facilities for Bioinformatics,DNA Technologies and Expression Analysis, Metabolomics, Proteomics,TILLING Core,Yeast One Hybrid Services Core. | Heritable, genetic, information, diverse, organism, function, health, disease, core, facility, service, genomic, training, |
is listed by: ScienceExchange is related to: University of California at Davis Genome Center Proteomics Core Facility has parent organization: University of California at Davis; California; USA |
SciEx_227, SCR_012659, SciEx_756 | https://genomecenter.ucdavis.edu/ | http://www.scienceexchange.com/facilities/uc-davis-genome-center-uc-davis | SCR_012480 | SciCrunch Registry | University of California Davis Genome Center Labs and Facilities, UC Davis Genome Center Labs & Facilities, University of California Davis Genome Center Labs & Facilities | 2026-11-07 12:00:42 | 3 | ||||||
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BioLayout Express 3D Resource Report Resource Website 100+ mentions |
BioLayout Express 3D (RRID:SCR_007179) | data analysis software, data processing software, data visualization software, software application, software resource | BioLayout Express3D is a powerful new tool for the visualization and analysis of networks derived from biological systems. Network-based approaches are becoming increasing popular for the analysis of ''omics and other high dimensional data. Networks can be produced from a wide variety of biological relationships, such as interactions between individuals, disease transmission, sequence similarity, metabolic pathways, protein interactions, pathways, regulatory cascades, gene expression, etc. BioLayout Express3D has been specifically designed for visualization, clustering and analysis of large network graphs in two- and three-dimensional space derived primarily, but not exclusively, from biological data. Sponsors: This resource is supported by BBSRC (BB / F003722 / 1) and the Wellcome Trust (GR077040RP). Keywords: Biology, Tool, Software, visualization, Analysis, Network, Biological, System, Dimentional, Data, Disease, Transmission, Sequence, Metabolic, Pathway, Protein, Interaction, Gene, Expression, Clustering, Analysis, |
has parent organization: University of Edinburgh; Scotland; United Kingdom has parent organization: European Bioinformatics Institute |
nif-0000-30182 | SCR_007179 | SciCrunch Registry | BioLayout Express | 2026-11-07 12:00:34 | 125 | ||||||||||
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DICOM Controlled Terminology Resource Report Resource Website |
DICOM Controlled Terminology (RRID:SCR_010302) | DCM | controlled vocabulary, data or information resource, ontology | DICOM Controlled Terminology (PS3.16 2013 Annex D) | owl | is listed by: BioPortal | nlx_157381 | SCR_010302 | SciCrunch Registry | 2026-11-07 12:00:17 | 0 | |||||||||
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University of North Carolina at Chapel Hill Labs and Facilities Resource Report Resource Website |
University of North Carolina at Chapel Hill Labs and Facilities (RRID:SCR_012447) | UNC Labs and Facilities, UNC Labs & Facilities | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 16,2024. Portal, Core facility. |
is listed by: ScienceExchange is related to: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_1400 | SCR_012447 | SciCrunch Registry | University of North Carolina at Chapel Hill Labs & Facilities | 2026-11-07 12:00:49 | 0 | ||||||||
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Diagnostic Ontology Resource Report Resource Website |
Diagnostic Ontology (RRID:SCR_010307) | DIAGONT | controlled vocabulary, data or information resource, ontology | A computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for diagnostic studies, that will assist in standardized reporting of diagnostic articles. They also report high percentage of agreement among five observers as a result of the inter-observer agreement that they conducted among them to tag 13 articles using the diagnostic ontology. Moreover, they extend their existing repository CERR-N (Center of Excellence in Research Reporting in Neurosurgery) to include diagnostic studies. | owl | is listed by: BioPortal | nlx_157386 | SCR_010307 | SciCrunch Registry | 2026-11-07 12:00:36 | 0 | |||||||||
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Chem Service, Inc. Resource Report Resource Website 10+ mentions |
Chem Service, Inc. (RRID:SCR_008380) | instrument manufacture, material service resource, production service resource, service resource | Chem Service, Inc. offers the convenience, cost savings and reliability of 1,000 Certified Standards Grade Organic Chemicals at your fingertips with our Organic Mini Stockroom Kit. Whether your lab is big or small, disposal fees are a concern. The Organic Mini-stockroom offers you the ability to have 1000 different chemicals at quantities ranging from 100mg to 10gm; thus, reducing disposal costs. Over 95% of their neat Standards Grade materials have a purity of 98.0% or greater, and have been analyzed by three or more (where feasible) independent methods of analysis. These do not require purity corrections when preparing a solution for use with EPA methods. Their more than 13,000 organic and inorganic standards, and solutions, support EPA Methods, ASTM Methods, State UST Methods, Air monitoring Methods, and International Methods. They offer explosive residue standards, PCB congeners, petroleum hydrocarbon standards for the petrochemical industry, pesticide standards, FAME, and vitamin standards for food analysis. Suited for identification of unknowns, product screening, optimal chemical selection and small scale chemical reactions, the O-1000A Organic Ministockroom Kit was designed for laboratories with broad chemical classification and indentification needs. Chem Service, Inc. is registered by ABS Quality Evaluations, Inc., to the internationally recognized requirements of ISO 9001 for design, development, production, distribution and servicing of organic neat and synthetic reference materials. | food, analysis, chemical, industry, method, organic, pestiide, petrochemical, solution, synthetic, vitamin | nif-0000-30016 | SCR_008380 | SciCrunch Registry | ChemService | 2026-11-07 12:00:16 | 10 |
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