Tools   Select Another Resource Report Type

http://circos.ca/

A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions.

Proper citation: Circos (RRID:SCR_011798) Copy   

•   Source: SciCrunch Registry
  

http://www.bioinformatics.babraham.ac.uk/projects/sierra/

Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users.

Proper citation: Babraham Sierra (RRID:SCR_011831) Copy   

•   Source: SciCrunch Registry
  

http://www.uts.edu.au/

Public research university located in Sydney, Australia.

Proper citation: University of Technology at Sydney; New South Wales; Australia (RRID:SCR_011711) Copy   

•   Source: SciCrunch Registry
  

http://www.h-invitational.jp/g-compass/

It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage.

Proper citation: G-compass (RRID:SCR_011799) Copy   

•   Source: SciCrunch Registry
  

https://code.google.com/p/discovering-cse/

Software for discovering motifs that induce sequencing errors.

Proper citation: discovering-cse (RRID:SCR_011832) Copy   

•   Source: SciCrunch Registry
  

https://tennessee.edu/

University of Tennessee System is comprised of campuses at Knoxville, Chattanooga, Pulaski and Martin; Health Science Center at Memphis; Space Institute at Tullahoma; and statewide Institute of Agriculture and Institute for Public Service.

Proper citation: University of Tennessee; Tennessee; USA (RRID:SCR_011712) Copy   

•   Source: SciCrunch Registry
  

https://sites.google.com/site/moleculetagtoolbox/

A software package for building accurate ConSeqs from tagged reads.

Proper citation: MT-Toolbox (RRID:SCR_011833) Copy   

•   Source: SciCrunch Registry
  

http://ftp://ftp.pasteur.fr/pub/gensoft/projects/AlienTrimmer/

Allows detecting and removing multiple alien sequences in both ends of sequence reads.

Proper citation: AlienTrimmer (RRID:SCR_011835) Copy   

•   Source: SciCrunch Registry
  

http://www.usciences.edu/academics/collegesDepts/pcp.aspx

Pharmaceutical education began at Philadelphia College of Pharmacy (PCP), the first such institution in North America. With nearly two centuries of experience in pharmacy and science and thousands of alumni working in the healthcare industry, the world turns to PCP graduates for advice. From undergraduate majors to graduate degrees to our esteemed PharmD program, you can learn where the founders (alumni such as McNeil, Lilly, Rorer, Wyeth, Warner, Burroughs, and Wellcome) of six of the top pharmaceutical companies in the world got their education. Since 1821, they have been preparing professionals in pharmacy practice, science, and health care. There is no better place than PCP to prepare you for a lifelong career in the healthcare industry.

Proper citation: University of the Sciences in Philadelphia College of Pharmacy (RRID:SCR_011728) Copy   

•   Source: SciCrunch Registry
  

http://www.uttyler.edu/

Public university in Tyler, Texas. Founded in 1971, it is a part of the University of Texas System.

Proper citation: University of Texas at Tyler; Texas; USA (RRID:SCR_011720) Copy   

•   Source: SciCrunch Registry
  

http://hiv.sanbi.ac.za/software/qtrim

A next generation sequence quality trimming tool.

Proper citation: QTrim (RRID:SCR_011842) Copy   

•   Source: SciCrunch Registry
  

https://github.com/najoshi/sabre

Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data.

Proper citation: sabre (RRID:SCR_011843) Copy   

•   Source: SciCrunch Registry
  

https://github.com/vsbuffalo/scythe

Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads.

Proper citation: Scythe (RRID:SCR_011844) Copy   

•   Source: SciCrunch Registry
  

http://www.scbi.uma.es/ingebiol/session/new/seqtrimnext

A customizable and distributed pre-processing software for NGS (Next Generation Sequencing) biological data.The old version for Sanger sequences, Seqtrim, has been discontinued.

Proper citation: SeqtrimNEXT (RRID:SCR_011845) Copy   

•   Source: SciCrunch Registry
  

http://tagcleaner.sourceforge.net/

A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets.

Proper citation: TagCleaner (RRID:SCR_011846) Copy   

•   Source: SciCrunch Registry
  

https://hpap.pmacs.upenn.edu/about-pancdb

Portal to make all Human Pancreas Analysis Program data available to anyone in research community and to interact with and connect scientific community. Stores clinical, molecular, cellular, immunology, imaging, and pathology data from pancreatic tissue and cell samples from organ donors with and without type 1 or type 2 diabetes.

Proper citation: PANC-DB (RRID:SCR_021860) Copy   

•   Source: SciCrunch Registry
  

http://imj.com.au/sgs/

Software tool as biophysical simulation model for livestock systems. It has flexible interface for setting up and running simulations with extensive graphical and data output.

Proper citation: Sustainable Grazing System Pasture Model (RRID:SCR_021854) Copy   

•   Source: SciCrunch Registry
  

https://www.research.va.gov/mvp/

National research program to learn how genes, lifestyle, and military exposures affect health and illness.

Proper citation: Million Veteran Program (RRID:SCR_021731) Copy   

•   Source: SciCrunch Registry
  

https://pypi.org/project/fuzzywuzzy/

Software pacakge that uses Levenshtein Distance to calculate differences between sequences for string matching.

Proper citation: FuzzyWuzzy (RRID:SCR_021699) Copy   

•   Source: SciCrunch Registry
  

https://pdf.medicalexpo.com/pdf/ge-healthcare-life-sciences/amersham-imager-600/80554-135352.html

Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution.

Proper citation: GE: Amersham Imager 600 (RRID:SCR_021853) Copy   

•   Source: SciCrunch Registry