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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Circos Resource Report Resource Website 5000+ mentions |
Circos (RRID:SCR_011798) | Circos | software resource | A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: JupiterPlot |
DOI:10.1101/gr.092759.109 | biotools:circos, OMICS_00932 | https://bio.tools/circos, https://sources.debian.org/src/circos/ | SCR_011798 | SciCrunch Registry | 2026-11-07 11:57:22 | 5669 | |||||||
|
Babraham Sierra Resource Report Resource Website 1+ mentions |
Babraham Sierra (RRID:SCR_011831) | software resource | Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users. | LIMS, Laboratory Information Management System, track samples, distribute results within small sequencing facility, track samples within facility and return sequencing, mapping and QC results, | has parent organization: Babraham Institute | GNU General Public License, v3 or later | OMICS_01014 | SCR_011831 | SciCrunch Registry | Sierra | 2026-11-07 11:57:22 | 6 | ||||||||
|
University of Technology at Sydney; New South Wales; Australia Resource Report Resource Website 1+ mentions |
University of Technology at Sydney; New South Wales; Australia (RRID:SCR_011711) | UTS | university | Public research university located in Sydney, Australia. |
is parent organization of: UTS Chemical Technologies Research Facility is parent organization of: UTS Microstructural Analysis Unit is parent organization of: University of Technology at Sydney Biosciences and Proteomics Technologies is parent organization of: University of Technology Sydney Microbial Imaging Core Facility |
nlx_153963, grid.117476.2, Wikidata:Q1145731, ISNI:0000 0004 1936 7611, Crossref funder ID:501100001775 | https://ror.org/03f0f6041 | SCR_011711 | SciCrunch Registry | University of Technology Sydney, University of Technology at Sydney | 2026-11-07 11:57:28 | 4 | ||||||||
|
G-compass Resource Report Resource Website 1+ mentions |
G-compass (RRID:SCR_011799) | G-compass | software resource | It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage. | is listed by: OMICtools | OMICS_00934 | SCR_011799 | SciCrunch Registry | 2026-11-07 11:57:29 | 1 | ||||||||||
|
discovering-cse Resource Report Resource Website |
discovering-cse (RRID:SCR_011832) | discovering-cse | software resource | Software for discovering motifs that induce sequencing errors. | motif |
is listed by: OMICtools has parent organization: Google Code |
GNU General Public License, v3 | OMICS_01040 | SCR_011832 | SciCrunch Registry | Discovering Context-Specific Sequencing Errors | 2026-11-07 11:57:29 | 0 | |||||||
|
University of Tennessee; Tennessee; USA Resource Report Resource Website 1+ mentions |
University of Tennessee; Tennessee; USA (RRID:SCR_011712) | UT | university | University of Tennessee System is comprised of campuses at Knoxville, Chattanooga, Pulaski and Martin; Health Science Center at Memphis; Space Institute at Tullahoma; and statewide Institute of Agriculture and Institute for Public Service. |
is parent organization of: University of Tennessee Health Science Center; Tennessee; USA is parent organization of: University of Tennessee Knoxville; Tennessee; USA is parent organization of: University of Tennessee KnoxvilleAdvanced Microscopy and Imaging Center AMIC Core Facility is parent organization of: University of Tennessee at Knoxville Genomics Core Facility |
, Crossref Funder ID 100014455, GRID grid.411461.7, nlx_14003, ISNI 0000 0001 2315 1184, Wikidata Q1150105 | https://ror.org/020f3ap87 | SCR_011712 | SciCrunch Registry | University of Tennessee | 2026-11-07 11:57:28 | 2 | ||||||||
|
MT-Toolbox Resource Report Resource Website 1+ mentions |
MT-Toolbox (RRID:SCR_011833) | MT-Toolbox | software resource | A software package for building accurate ConSeqs from tagged reads. | is listed by: OMICtools | PMID:23995388 | BSD License | OMICS_01058 | SCR_011833 | SciCrunch Registry | Molecule Tag Toolbox | 2026-11-07 11:57:31 | 4 | |||||||
|
AlienTrimmer Resource Report Resource Website 50+ mentions |
AlienTrimmer (RRID:SCR_011835) | AlienTrimmer | software resource | Allows detecting and removing multiple alien sequences in both ends of sequence reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:23912058 | Free | biotools:alientrimmer, OMICS_01082 | https://bio.tools/alientrimmer | SCR_011835 | SciCrunch Registry | 2026-11-07 11:57:22 | 74 | ||||||
|
University of the Sciences in Philadelphia College of Pharmacy Resource Report Resource Website |
University of the Sciences in Philadelphia College of Pharmacy (RRID:SCR_011728) | data or information resource, degree granting program, graduate program resource, institution, organization portal, portal, training resource, undergraduate program resource, university | Pharmaceutical education began at Philadelphia College of Pharmacy (PCP), the first such institution in North America. With nearly two centuries of experience in pharmacy and science and thousands of alumni working in the healthcare industry, the world turns to PCP graduates for advice. From undergraduate majors to graduate degrees to our esteemed PharmD program, you can learn where the founders (alumni such as McNeil, Lilly, Rorer, Wyeth, Warner, Burroughs, and Wellcome) of six of the top pharmaceutical companies in the world got their education. Since 1821, they have been preparing professionals in pharmacy practice, science, and health care. There is no better place than PCP to prepare you for a lifelong career in the healthcare industry. | has parent organization: University of Sciences in Philadelphia; Pennsylvania; USA | nlx_16974 | SCR_011728 | SciCrunch Registry | PCP College of Pharmacy | 2026-11-07 11:57:28 | 0 | ||||||||||
|
University of Texas at Tyler; Texas; USA Resource Report Resource Website 1+ mentions |
University of Texas at Tyler; Texas; USA (RRID:SCR_011720) | university | Public university in Tyler, Texas. Founded in 1971, it is a part of the University of Texas System. |
is parent organization of: SRPDB is parent organization of: tmRNA Database |
Wikidata:Q212528, ISNI:0000 0001 0626 4654, nlx_48968, grid.267327.5 | https://ror.org/01azfw069 | SCR_011720 | SciCrunch Registry | UTT | 2026-11-07 11:57:21 | 1 | |||||||||
|
QTrim Resource Report Resource Website 1+ mentions |
QTrim (RRID:SCR_011842) | QTrim | software resource | A next generation sequence quality trimming tool. | is listed by: OMICtools | OMICS_01089 | SCR_011842 | SciCrunch Registry | 2026-11-07 11:57:20 | 6 | ||||||||||
|
sabre Resource Report Resource Website 100+ mentions |
sabre (RRID:SCR_011843) | sabre | data analysis software, data processing software, software application, software resource | Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data. | demultiplex, bardcode, separate, fastq, format, data, next, generation, sequencing, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:sabre, OMICS_01090 | https://bio.tools/sabre | SCR_011843 | SciCrunch Registry | Systems Approach to Biomarker Research | 2026-11-07 11:57:22 | 219 | ||||||
|
Scythe Resource Report Resource Website 100+ mentions |
Scythe (RRID:SCR_011844) | Scythe | software resource | Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. |
is listed by: OMICtools is listed by: Debian |
OMICS_01091 | https://sources.debian.org/src/scythe/ | SCR_011844 | SciCrunch Registry | Scythe - A Bayesian adapter trimmer | 2026-11-07 11:57:29 | 189 | ||||||||
|
SeqtrimNEXT Resource Report Resource Website 10+ mentions |
SeqtrimNEXT (RRID:SCR_011845) | SeqtrimNEXT | software resource | A customizable and distributed pre-processing software for NGS (Next Generation Sequencing) biological data.The old version for Sanger sequences, Seqtrim, has been discontinued. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
biotools:seqtrim, OMICS_01093 | https://bio.tools/seqtrim | SCR_011845 | SciCrunch Registry | Seqtrim | 2026-11-07 11:57:32 | 29 | |||||||
|
TagCleaner Resource Report Resource Website 50+ mentions |
TagCleaner (RRID:SCR_011846) | software application, software resource, standalone software, web application | A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets. | tag sequence, standalone software, web application, microbiome, genomic, metagenomic, datasets |
is listed by: OMICtools is listed by: Human Microbiome Project has parent organization: SourceForge |
Available for download | OMICS_01094 | SCR_011846 | SciCrunch Registry | 2026-11-07 11:57:20 | 65 | |||||||||
|
PANC-DB Resource Report Resource Website 1+ mentions |
PANC-DB (RRID:SCR_021860) | data or information resource, database, portal, topical portal | Portal to make all Human Pancreas Analysis Program data available to anyone in research community and to interact with and connect scientific community. Stores clinical, molecular, cellular, immunology, imaging, and pathology data from pancreatic tissue and cell samples from organ donors with and without type 1 or type 2 diabetes. | HIRN, HPAP, Human Pancreas Analysis Program, |
is listed by: NIDDK Information Network (dkNET) is related to: Human Islet Research Network (HIRN) |
Free, Freely available | SCR_021860 | SciCrunch Registry | 2026-11-07 12:00:03 | 1 | ||||||||||
|
Sustainable Grazing System Pasture Model Resource Report Resource Website |
Sustainable Grazing System Pasture Model (RRID:SCR_021854) | simulation software, software application, software resource | Software tool as biophysical simulation model for livestock systems. It has flexible interface for setting up and running simulations with extensive graphical and data output. | simulation model, livestock systems | Free, Available for download, Freely available | SCR_021854 | SciCrunch Registry | SGS Pasture Model | 2026-11-07 12:00:23 | 0 | ||||||||||
|
Million Veteran Program Resource Report Resource Website 100+ mentions |
Million Veteran Program (RRID:SCR_021731) | MVP | data or information resource, portal, topical portal | National research program to learn how genes, lifestyle, and military exposures affect health and illness. | Genomic dataset, genes, lifestyle, military exposures, affect health, affect illness | Free, Freely available | SCR_021731 | SciCrunch Registry | 2026-11-07 12:00:17 | 273 | ||||||||||
|
FuzzyWuzzy Resource Report Resource Website 1+ mentions |
FuzzyWuzzy (RRID:SCR_021699) | data analytics software, software application, software resource, software toolkit | Software pacakge that uses Levenshtein Distance to calculate differences between sequences for string matching. | Levenshtein Distance, calculate differences between sequences, string matching | Free, Freely available | SCR_021699 | SciCrunch Registry | 2026-11-07 12:00:16 | 5 | |||||||||||
|
GE: Amersham Imager 600 Resource Report Resource Website 1+ mentions |
GE: Amersham Imager 600 (RRID:SCR_021853) | instrument resource | Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution. | USEDit, chemiluminescence, colorimetric, fluorescent, image capture, digitial images | is listed by: USEDit | Commercially available | https://photos.labwrench.com/equipmentManuals/19468-6742.pdf | SCR_021853 | SciCrunch Registry | GE Healthcare Amersham Imager 600, Amersham Imager 600 | 2026-11-07 12:00:03 | 9 |
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