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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PiMS Resource Report Resource Website 100+ mentions |
PiMS (RRID:SCR_011816) | PiMS | software resource | Software for a Laboratory Information Management System (LIMS) developed to support the unpredictable workflows of Molecular biology and Protein production labs of all sizes. | protein | is listed by: OMICtools | BBSRC ; CCP4 ; Instruct |
PMID:21385349 | Free for academic use | OMICS_01010 | SCR_011816 | SciCrunch Registry | Protein Information Management System | 2026-11-07 11:57:20 | 190 | |||||
|
Western University; Ontario; Canada Resource Report Resource Website 1+ mentions |
Western University; Ontario; Canada (RRID:SCR_011778) | Western | university | University of Western Ontario, corporately branded as Western University as of 2012 and commonly shortened to Western, is public research university in London, Ontario, Canada. |
is parent organization of: Basic OligoNucleotide Design is parent organization of: University of Western Ontario London Ontario Canada Physiology and Pharmacology is parent organization of: ALDEx2 is parent organization of: MultiXplore is parent organization of: Mousebytes is parent organization of: Primate Cell Type Database |
Crossref funder ID:501100008093, grid.39381.30, nlx_157254, Wikidata:Q1144262, ISNI:0000 0004 1936 8884 | https://ror.org/02grkyz14 | SCR_011778 | SciCrunch Registry | University of Western Ontario, Western University of London Ontario, Western University | 2026-11-07 11:57:28 | 4 | ||||||||
|
Annmap Resource Report Resource Website 1+ mentions |
Annmap (RRID:SCR_011783) | Annmap | data or information resource, database, software resource | A genome browser that includes mappings between genomic features and Affymetrix microarrays. Associated with annmap is: * a Bioconductor package, annmap that provides programmatic access to the underlying MySQL database tables (which are freely available for download on this site) * xmapbridge, a Bioconductor package that outputs numeric data in a form suitable for presentation in the browser. This is supported by XMapBridge, a Java client that sits on the local desktop and performs the graph rendering for the browser. | is listed by: OMICtools | Cancer Research UK ; Cancer Research UK Manchester Institute |
OMICS_00900 | SCR_011783 | SciCrunch Registry | 2026-11-07 11:57:28 | 6 | |||||||||
|
B-Fabric Resource Report Resource Website 1+ mentions |
B-Fabric (RRID:SCR_011827) | B-Fabric | data or information resource, data repository, database, service resource, storage service resource | An open infrastructure for managing projects and data in life sciences that allows to store and access experimental data together with its scientific context. The platform connects the data from scientific instruments with data analysis tools, including workflow, annotation, and data visualization support. All public data can be searched and used to carry out inter-experiment analyses. For a fee, B-Fabric Order allows you to order the following analytical services at the FGCZ independent of a User Lab research project: Mass spectrometry, Protein sequencing, peptide sequencing, Amino acid analysis, Chromatography, Electrophoresis. | project management, mass spectrometry, protein sequencing, peptide sequencing, amino acid analysis, chromatography, electrophoresis |
is listed by: OMICtools has parent organization: University of Zurich; Zurich; Switzerland |
PMID:21772064 | Account required | OMICS_01002 | SCR_011827 | SciCrunch Registry | 2026-11-07 11:57:29 | 1 | |||||||
|
Galaxy LIMS Resource Report Resource Website |
Galaxy LIMS (RRID:SCR_011829) | Galaxy LIMS | software resource | A laboratory information management system (LIMS) for a next-generation sequencing (NGS) laboratory within the existing Galaxy platform. | is listed by: OMICtools | BMBF | PMID:23479349 | OMICS_01004 | SCR_011829 | SciCrunch Registry | 2026-11-07 11:57:31 | 0 | ||||||||
|
GPU-BLAST Resource Report Resource Website |
GPU-BLAST (RRID:SCR_011820) | GPU-BLAST | software resource | Software for an accelerated version of the popular NCBI-BLAST using a general-purpose graphics processing unit (GPU). It s nearly four times faster, while producing identical results. GPU-BLAST supports: protein alignment according to blastp (it does not support psiblast), multiple CPU threads working in parallel with a single GPU, and input files with multiple protein queries. | c++, gpu/cuda |
is listed by: OMICtools has parent organization: Carnegie Mellon University; Pennsylvania; USA |
PMID:21088027 | Free, Public, Acknowledgement requested | OMICS_00995 | http://eudoxus.cheme.cmu.edu/gpublast/gpublast.html | SCR_011820 | SciCrunch Registry | 2026-11-07 11:57:22 | 0 | ||||||
|
Witten/Herdecke University; North Rhine-Westphalia; Germany Resource Report Resource Website |
Witten/Herdecke University; North Rhine-Westphalia; Germany (RRID:SCR_011788) | UW/H | university | Private, state-recognized, nonprofit university in Witten, North Rhine-Westphalia, Germany. | is parent organization of: Vestische Children and Youth Clinic Dates; North Rhine-Westphalia; Germany | Wikidata:Q314305, ISNI:0000 0000 9024 6397, nlx_158586, grid.412581.b | https://ror.org/00yq55g44 | SCR_011788 | SciCrunch Registry | Universitat Witten / Herdecke, Universit�t Witten/Herdecke, Witten / Herdecke University, Universitat Witten/Herdecke, University of Witten/Herdecke, University of Witten / Herdecke, Witten/Herdecke University, Universit�t Witten / Herdecke | 2026-11-07 11:57:22 | 0 | ||||||||
|
Womens health initiative Resource Report Resource Website 1+ mentions |
Womens health initiative (RRID:SCR_011789) | WHI, WH | government granting agency | has parent organization: National Heart Lung and Blood Institute | SCR_011789 | SciCrunch Registry | Women''s Health Initiative | 2026-11-07 11:57:28 | 4 | |||||||||||
|
TBLASTX Resource Report Resource Website 1000+ mentions |
TBLASTX (RRID:SCR_011823) | TBLASTX | software resource, web application | A web-based tool used to search translated nucleotide databases using a translated nucleotide query. | nucleotide database, web based, nucleotide query |
is listed by: OMICtools has parent organization: NCBI |
Available to the research community | OMICS_01000 | SCR_011823 | SciCrunch Registry | Translated BLAST: tblastx | 2026-11-07 11:57:31 | 1467 | |||||||
|
IGB Resource Report Resource Website 100+ mentions |
IGB (RRID:SCR_011792) | IGB | software resource | An easy-to-use, highly customizable genome browser you can use to visualize and explore genomic data and annotations, including RNA-Seq, ChIP-Seq, tiling array data, and more. | genome, rna-seq, chip-seq, tiling array, browser |
is listed by: OMICtools has parent organization: University of North Carolina at Charlotte; North Carolina; USA |
PMID:19654113 | Free, Acknowledgement requested | OMICS_00916 | SCR_011792 | SciCrunch Registry | Integrated Genome Browser | 2026-11-07 11:57:19 | 354 | ||||||
|
Integrative Genomics Viewer Resource Report Resource Website 500+ mentions |
Integrative Genomics Viewer (RRID:SCR_011793) | IGV | software resource | A high-performance visualization tool for interactive exploration of large, integrated genomic datasets. | genomic datasets exploration, |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is listed by: SoftCite has parent organization: Broad Institute |
DOI:10.1038/nbt.1754 | OMICS_00917, biotools:igv | https://bio.tools/igv, https://sources.debian.org/src/igv/ | SCR_011793 | SciCrunch Registry | 2026-11-07 11:57:22 | 878 | |||||||
|
NCBI Genome Workbench Resource Report Resource Website 10+ mentions |
NCBI Genome Workbench (RRID:SCR_011794) | Genome Workbench | software resource | An integrated application for viewing and analyzing sequence data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: NCBI |
OMICS_00920, biotools:ncbi_genome_workbench | https://bio.tools/ncbi_genome_workbench | SCR_011794 | SciCrunch Registry | 2026-11-07 11:57:28 | 11 | ||||||||
|
ngs.plot Resource Report Resource Website 10+ mentions |
ngs.plot (RRID:SCR_011795) | ngs.plot | software resource | A software program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions. | bio.tools, FASEB list |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Google Code |
GNU General Public License, v3 | BioTools:ngs.plot, OMICS_00922, biotools:ngs.plot | https://bio.tools/ngs.plot, https://bio.tools/ngs.plot, https://bio.tools/ngs.plot | SCR_011795 | SciCrunch Registry | ngsplot, ngsplot - Quick mining and visualization of next-generation sequencing data by integrating genomic databases | 2026-11-07 11:57:30 | 45 | ||||||
|
Vall d'Hebron Institute of Oncology; Barcelona; Spain Resource Report Resource Website 1+ mentions |
Vall d'Hebron Institute of Oncology; Barcelona; Spain (RRID:SCR_011755) | VHIO | institution | A center of biomedical research with scientists and physicians working together at the nexus of basic science and clinical research related to oncological diseases. They also pursue to make contributions to the development of new and better therapies for the treatment of cancer. * Scientific practice into the clinic for the benefit of oncology patients * Scientific research excellence in the areas of basic, translational and clinical research * Scientific cooperation among national and international oncology research institutions * Promotion of all oncology research-related activities, thereby contributing towards improving the quality of life of people | is related to: OncoTrack | nlx_158353 | SCR_011755 | SciCrunch Registry | Vall d'Hebron Institute of Oncology | 2026-11-07 11:57:18 | 3 | |||||||||
|
Vanderbilt University; Tennessee; USA Resource Report Resource Website 10+ mentions |
Vanderbilt University; Tennessee; USA (RRID:SCR_011756) | VU, Vanderbilt | university | Private research university in Nashville, Tennessee. |
is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: Cooperative Human Tissue Network is related to: redcap-to-nda is related to: Pancreatlas is related to: VanderBot is parent organization of: Vanderbilt Bradykinin Core Laboratory is parent organization of: Vanderbilt Flow Cytometry Core Laboratory is parent organization of: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core is parent organization of: Vanderbilt X-Ray Photoelectron Spectroscopy Lab is parent organization of: vuTools is parent organization of: REDCap is parent organization of: PheWAS R Package is parent organization of: PheWAS Catalog is parent organization of: My Cancer Genome is parent organization of: Vanderbilt BioVU is parent organization of: Beta Cell Biology Consortium is parent organization of: VirusFinder is parent organization of: PheKB is parent organization of: Advanced Sequence Automated Pipeline is parent organization of: Law and Neuroscience is parent organization of: Genotype-IBD Sharing Test is parent organization of: ResearchMatch is parent organization of: Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center is parent organization of: Vanderbilt Energy Balance Core Laboratory is parent organization of: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit is parent organization of: VU National Research Resource for Imaging Mass Spectrometry is parent organization of: eMERGE Network: electronic Medical Records and Genomics is parent organization of: Clinical and Translational Science Awards Consortium is parent organization of: MASI Label Fusion is parent organization of: MASIMatlab is parent organization of: Vanderbilt Free Radicals in Medicine Core is parent organization of: VANTAGE is parent organization of: VICC Research Informatics is parent organization of: Vanderbilt Antibody and Protein Resource is parent organization of: Vanderbilt Automation and Informatics Core is parent organization of: Vanderbilt Biomolecular NMR Facility is parent organization of: Vanderbilt Biophysical Instrumentation Core Facility is parent organization of: Vanderbilt Biospecimen Shared Resource is parent organization of: Vanderbilt Biostatistics Collaboration Center is parent organization of: Vanderbilt Cardiovascular Translational and Clinical Research Core is parent organization of: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility is parent organization of: Vanderbilt Center for Molecular Neuroscience Cores is parent organization of: Vanderbilt Chemical Synthesis Core Laboratory is parent organization of: Vanderbilt Clinical Research Center is parent organization of: Vanderbilt Clinical Trials Center is parent organization of: Vanderbilt Clinical Trials Shared Resource is parent organization of: Vanderbilt University Center for Human Genetics Research Computational Genomics Core is parent organization of: Vanderbilt Cooperative Human Tissue Network is parent organization of: Vanderbilt DNA Databank is parent organization of: Vanderbilt DNA Resources Core is parent organization of: Vanderbilt Eicosanoid Core Laboratory is parent organization of: Vanderbilt Genetic Studies Ascertainment Core is parent organization of: Vanderbilt High Throughput Screening Facility is parent organization of: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility is parent organization of: Vanderbilt Human Immunology Core Laboratory is parent organization of: Vanderbilt Innovative Translational Research Shared Resource is parent organization of: Vanderbilt Institute for Integrative Biosystems Research and Education Automated Biosystems Core Laboratory is parent organization of: Vanderbilt Institute for Integrative Biosystems Research and Education Microfabrication Core is parent organization of: Vanderbilt Institute of Nanoscale Science and Engineering is parent organization of: Vanderbilt Lipidomics Core Laboratory is parent organization of: Vanderbilt Mass Spectrometry Core Lab is parent organization of: Vanderbilt Mass Spectrometry Research Center Proteomics Laboratory is parent organization of: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility is parent organization of: Vanderbilt Mouse Kidney Histology and Morphometry Core is parent organization of: Vanderbilt Mouse Kidney Physiology Core Lab is parent organization of: Vanderbilt Neurochemistry Core Laboratory is parent organization of: Vanderbilt Rat Neurobehavioral Laboratory is parent organization of: Vanderbilt Sleep Research Core is parent organization of: Vanderbilt Survey Research Shared Resource is parent organization of: Vanderbilt Tissue Core Laboratory is parent organization of: Vanderbilt Transgenic Mouse/Embryonic Stem Cell Shared Resource is parent organization of: Vanderbilt Translational Pathology Shared Resource is parent organization of: Vanderbilt Zebrafish Aquatic Facility is parent organization of: Vanderbilt University School of Medicine; Tennessee; USA is parent organization of: Vanderbilt University Medical Center; Tennessee; USA is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: Committee on Coherence at Scale for Higher Education is parent organization of: CTSpedia is parent organization of: JIST: Java Image Science Toolkit is parent organization of: APERTURE is parent organization of: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource is parent organization of: Vanderbilt Diabetes Research and Training Center is parent organization of: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource is parent organization of: VALiDATe29 Squirrel Monkey Brain Atlas is parent organization of: Pandora White Matter Atlas is parent organization of: Vanderbilt University Genome Editing Resource Core Facility is parent organization of: Vanderbilt University Mouse Metabolic Phenotyping Center Core Facility is parent organization of: Vanderbilt University Creative Data Solutions Core Facility is parent organization of: Vanderbilt University Medical Center Vanderbilt Diet, Body Composition, and Human Metabolism Core Facility is parent organization of: Vanderbilt Cryopreserved Mouse Repository |
nlx_24468, ISNI:0000 0001 2264 7217, Crossref funder ID:100006537, grid.152326.1, Wikidata:Q29052 | https://ror.org/02vm5rt34 | SCR_011756 | SciCrunch Registry | Vanderbilt University | 2026-11-07 11:57:21 | 11 | ||||||||
|
Vanderbilt University School of Medicine; Tennessee; USA Resource Report Resource Website 1+ mentions |
Vanderbilt University School of Medicine; Tennessee; USA (RRID:SCR_011757) | VUSM | university | Vanderbilt University School of Medicine trains leaders in medicine by providing the best faculty and physicians in the best learning environment for the best students in the world. We are known for our personal attention and our customized medical education. Our research program is the fastest growing in the U.S. But our ranking among the top medical schools comes not just from an innovative curriculum and state-of-the-art facilities. It comes from our commitment to people. |
has parent organization: Vanderbilt University; Tennessee; USA is parent organization of: Vanderbilt University Medical Center Pharmacology is parent organization of: VUSM Eicosanoid Core Laboratory is parent organization of: National Mouse Metabolic Phenotyping Centers |
ISNI:0000 0001 2293 9172, Wikidata:Q7914466, grid.471397.f, nlx_144377 | https://ror.org/03yv4n892 | SCR_011757 | SciCrunch Registry | Vanderbilt University School of Medicine | 2026-11-07 11:57:28 | 1 | ||||||||
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Vestische Children and Youth Clinic Dates; North Rhine-Westphalia; Germany Resource Report Resource Website |
Vestische Children and Youth Clinic Dates; North Rhine-Westphalia; Germany (RRID:SCR_011759) | hospital |
is related to: EMIF has parent organization: Witten/Herdecke University; North Rhine-Westphalia; Germany |
SCR_011759 | SciCrunch Registry | Vestische Kinder- und Jugendklinik Datteln, Vestische Children and Youth Clinic Dates | 2026-11-07 11:57:19 | 0 | ||||||||||||
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Victor Chang Cardiac Research Institute; New South Wales; Australia Resource Report Resource Website |
Victor Chang Cardiac Research Institute; New South Wales; Australia (RRID:SCR_011761) | VCCRI | institution | Australian nonprofit medical research facility that is dedicated to finding cures for cardiovascular disease. | is parent organization of: miRspring | Crossref funder ID: 100007221, ISNI: 0000 0000 9472 3971, nlx_156701, grid.1057.3, Wikidata: Q7925795 | https://ror.org/03trvqr13 | SCR_011761 | SciCrunch Registry | Victor Chang Cardiac Research Institute | 2026-11-07 11:57:28 | 0 | ||||||||
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MizBee Resource Report Resource Website 1+ mentions |
MizBee (RRID:SCR_011804) | MizBee | software resource | A multiscale synteny browser for exploring conservation relationships in comparative genomics data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Utah; Utah; USA |
OMICS_00943, biotools:mizbee | https://bio.tools/mizbee | SCR_011804 | SciCrunch Registry | MizBee - A Multiscale Synteny Browser | 2026-11-07 11:57:31 | 2 | |||||||
|
PipMaker and MultiPipMaker Resource Report Resource Website 50+ mentions |
PipMaker and MultiPipMaker (RRID:SCR_011806) | PipMaker and MultiPipMaker | software resource | PipMaker computes alignments of similar regions in two DNA sequences. Moreover, MultiPipMaker can be requested to compute a true multiple alignment of the input sequences and return a nucleotide-level view of the results. |
is listed by: OMICtools has parent organization: Pennsylvania State University |
OMICS_00944 | SCR_011806 | SciCrunch Registry | 2026-11-07 11:57:22 | 78 |
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