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http://www.cgen.com/

Drug discovery company providing pharma with protein and antibody therapeutics in the fields of Oncology and Immunology.

Proper citation: Compugen (RRID:SCR_004631) Copy   

•   Source: SciCrunch Registry

http://www.jax.org/index.html

An independent, nonprofit organization focused on mammalian genetics research to advance human health. Their mission is to discover the genetic basis for preventing, treating, and curing human disease, and to enable research for the global biomedical community. Jackson Laboratory breeds and manages colonies of mice as resources for other research institutions and laboratories, along with providing software and techniques. Jackson Lab also conducts genetic research and provides educational material for various educational levels.

Proper citation: Jackson Laboratory (RRID:SCR_004633) Copy   

•   Source: SciCrunch Registry

https://www.fmrib.ox.ac.uk/phpwiki/index.php/FslAtlasIntegration

FslAtlasIntegration is a documentation site for FSL coordinate reporting and atlas integration. Links to references are available to internal FMRIB systems. Some of this material is drawn from Matthew Brett''''s webpages on MNI-Talairach Atlas Differences and Localization in Brain Mapping. http://www.mrc-cbu.cam.ac.uk/Imaging/Common/mnispace.shtml

Proper citation: FslAtlasIntegration (RRID:SCR_004634) Copy   

•   Source: SciCrunch Registry

https://www.nthu.edu.tw/

Research university in Hsinchu City, Taiwan. Public institution that traces its roots back to 1911, when it was established in Beijing as Tsing Hua Academy.

Proper citation: National Tsing Hua University; Hsinchu; Taiwan (RRID:SCR_004590) Copy   

•   Source: SciCrunch Registry

https://github.com/lmrodriguezr/nonpareil

Estimate average coverage and create Nonpareil curves for metagenomic datasets.

Proper citation: Nonpareil (RRID:SCR_004629) Copy   

•   Source: SciCrunch Registry

http://www.hema-quebec.qc.ca/index.en.html

Hema-Quebec''s mission is to efficiently provide adequate quantities of safe, optimal blood components, substitutes, human tissues and cord blood to meet the needs of all Quebecers; provide and develop expertise along with specialized and innovative services and products in the fields of transfusion medicine and human tissue transplantation. Hema-Quebec is driven by the commitment, support and recognition of its employees as well as the trust of its partners to remain the standard of quality and innovation with respect to the safe procurement of blood products, human tissues and stem cells.

Proper citation: Hema-Quebec (RRID:SCR_004700) Copy   

•   Source: SciCrunch Registry

http://www.ucdenver.edu/Pages/UCDWelcomePage.aspx

University of Colorado Denver is a public research university in Denver. It is part of the University of Colorado system.

Proper citation: University of Colorado Denver; Colorado; USA (RRID:SCR_004662) Copy   

•   Source: SciCrunch Registry

http://www.pspassociation.org.uk/

The PSP Association is dedicated to the support of people with Progressive Supranuclear Palsy (PSP) and those who care for them. We also support those with the related, but rarer, disease Cortico Basal Degeneration (CBD). We fund research to better understand the possible causes of PSP and CBD, to find ways to achieve earlier and better diagnosis and to develop treatments that could potentially slow down, or even halt, the progression of these diseases. We support patients, families and carers through the services we offer on a UK-wide basis, through our Nurse Specialist helpline, our Local Support Groups, our publications (including the comprehensive Carers'' Information Pack) and our Annual Symposium for carers and therapists. We raise awareness of PSP and CBD on a local and national level and work in partnership with the relevant bodies and umbrella organisations in the UK to seek to make a positive difference to the lives of people with PSP and CBD. Registered charity numbers: England & Wales 1037087 / Scotland: SC041199.

Proper citation: PSP Association (RRID:SCR_004655) Copy   

•   Source: SciCrunch Registry

http://omics.informatics.indiana.edu/AbundanceBin/

An abundance-based software tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes -two important characteristic parameters for a microbial community.

Proper citation: AbundanceBin (RRID:SCR_004648) Copy   

•   Source: SciCrunch Registry

http://www.openscholarship.org/jcms/c_5012/en/

An organization for universities and research institutions that is an information service and a forum for raising and discussing issues around the mission of modern universities and research institutions, particularly with regard to the creation, dissemination and preservation of research findings. Its aim is to further the opening up of scholarship and research that we are now seeing through the growing open access, open education, open science and open innovation movements. These, and other, "open" approaches to scholarship are changing the way research and learning are done and there are profound implications for universities and research institutions. EOS has been established to help guide developments and to assist others in understanding the issues and their implications. The context in which EOS has been established is that of increasing interest from governments, funders and the research community itself in opening up the way research is carried out and communicated. This interest is complemented by new research practices and processes that can work effectively only in an open, collaborative environment. Developments of relevance to the mission of EnablingOpenScholarship are reported on and news and details of forthcoming meetings, briefings and discussion sessions is provided.

Proper citation: EnablingOpenScholarship (RRID:SCR_003235) Copy   

•   Source: SciCrunch Registry

http://wiki.solariseclipse.net/PrimerDesigner

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. Software program to aid in designing of primers and creation of primer sheets. The program allows users to select a background and enter mutaions. An initial primer is then suggested. User can manipulate the selected primer to add or remove nucleotides from either 5? or 3? ends. A set of parameters reflecting the goodness of the primer is updated on the fly, as the user makes changes. Once happy with the primer, the information is saved in a primer sheet, which can then be uploaded to the BGME lab primer database on the Wiki.

Proper citation: Primer Designer (RRID:SCR_003189) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/salt1/

Software that can accurately and sensitivity classify short reads of next-generation sequencing (NGS) into protein domain families. It is based on profile HMM and a supervised graph contribution algorithm. Compared to existing tools, it has high sensitivity and specificity in classifying short reads into their native domain families.

Proper citation: SALT (RRID:SCR_003187) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/xorro-overlap/

Efficient paired-read overlap software program for use with Illumina sequencing.

Proper citation: XORRO (RRID:SCR_003181) Copy   

•   Source: SciCrunch Registry

http://compbio.cs.sfu.ca/software-novelseq

Software pipeline to detect novel sequence insertions using high throughput paired-end whole genome sequencing data.

Proper citation: NovelSeq (RRID:SCR_003136) Copy   

•   Source: SciCrunch Registry

http://mrcanavar.sourceforge.net/

Copy number caller that analyzes the whole-genome next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.

Proper citation: mrCaNaVaR (RRID:SCR_003135) Copy   

•   Source: SciCrunch Registry

http://www.arnoldfoundation.org/

Private foundation whose funding activities are primarily centered around improving life in the United States. Its mission is to produce big and lasting changes in society over the long term. Their four areas of focus (2014) are: criminal justice, K-12 education, public accountability, and research integrity.

Proper citation: Laura and John Arnold Foundation (RRID:SCR_003240) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/saskprimerfs/

Software pipeline for designing gene family specific PCR primers. It infers intronic regions of a target species and design for them by utilizing DNA sequence information from a reference organism.

Proper citation: SaskPrimerFS (RRID:SCR_003159) Copy   

•   Source: SciCrunch Registry

http://www.genecopoeia.com/

Commercial organization which provides reagents and services for molecular biology research. Its services include clone collections, microRNA solutions, genome editing, qPCR products, and fluorescent labeling and detection.

Proper citation: GeneCopoeia (RRID:SCR_003145) Copy   

•   Source: SciCrunch Registry

https://github.com/brunonevado/Pipeliner

Software for evaluating the performance of bioinformatics pipelines for Next Generation re-Sequencing.

Proper citation: Pipeliner (RRID:SCR_003171) Copy   

•   Source: SciCrunch Registry

http://www.allelebiotech.com/

A private company offering a wide variety of Molecular Biology reagents, fluorescent proteins, luciferase assay substrates, genotyping kits, and various custom services. The company isalso in the RNAi field with its recent patents in Pol III promoter-driven siRNA, shRNA, and miRNA. They introduced high titer lentivirus, camelid antibodies, and cell based assays and also offer Baculovirus protein expression and Gryphon retrovirus systems.

Proper citation: Allele Biotechnology (RRID:SCR_003164) Copy   

•   Source: SciCrunch Registry