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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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UCL Medical School; London; United Kingdom Resource Report Resource Website |
UCL Medical School; London; United Kingdom (RRID:SCR_002211) | university | Medical school at the University College London that provides undergraduate and postgraduate medical education programs, educational research, and specializations in variety of medical subfields. | medical school, london, medical education research |
has parent organization: University College London; London; United Kingdom is parent organization of: UCL-RFH BioBank |
Free | nlx_143837 | SCR_002211 | SciCrunch Registry | University College London Medical School, UCL Medical School | 2026-11-07 11:54:54 | 0 | ||||||||
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Genoscope Resource Report Resource Website 100+ mentions |
Genoscope (RRID:SCR_002172) | Genoscope | institution | French national sequencing center with the following resources: * Sequencing ** Genoscope Projects * Environmental genomics ** Microbial diversity in wastewater ** Metabolic genomics * Bioinformatics ** Atelier for comparative genomics ** Computational Systems Biology ** Servers resources *** GGB for Generic Genome Browser: graphic interface for various databases (sequence, annotation, syntenies...) for a given organism. *** MaGe for Magnifying Microbial Genomes: annotation system for microbial genomes. | environmental genomics, biocatalysis, environment, genomics, sequencing, bioinformatics, biodiversity, blast, blat, ggb, mage, metabolic, whole genome shotgun, chromosome 3, cdna, chromosome 14, alternative splicing, o��kopleura dioica, mutation, enzymatic cloning, screening, synteny, data set, genome, sequence, annotation, genome browser, FASEB list | has parent organization: CEA; Gif sur Yvette; France | Free, Freely available | Wikidata: Q3100800, ISNI: 0000 0004 0641 2997, grid.434728.e, nif-0000-20957 | https://ror.org/028pnqf58 | SCR_002172 | SciCrunch Registry | Genoscope - Centre National de S�quen�age, Genoscope - French National Sequencing Center, French National Sequencing Center, Genoscope - Centre National de Sequencage | 2026-11-07 11:54:53 | 165 | ||||||
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DEMI Resource Report Resource Website 1+ mentions |
DEMI (RRID:SCR_002291) | software resource | R package for estimating differential expression from multiple indicators that capitalizes on the high number of concurrent measurements. It extends to various experimental designs and target categories (transcripts, genes, genomic regions) as well as small sample sizes. | standalone software, affymetrix, mac os x, unix/linux, windows, r |
is listed by: OMICtools has parent organization: CRAN |
PMID:24586062 | Free, Available for download, Freely available, Acknowledgement requested | OMICS_03438 | http://cran.r-project.org/web/packages/demi/ | SCR_002291 | SciCrunch Registry | demi: Differential Expression from Multiple Indicators, Differential Expression from Multiple Indicators | 2026-11-07 11:54:55 | 6 | ||||||
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EarthChem Resource Report Resource Website 10+ mentions |
EarthChem (RRID:SCR_002207) | EarthChem | data or information resource, data repository, database, service resource, storage service resource | Accepts and makes available geochemical, geochronlogical, and petrological data (analytical and synthesis) through this community-driven effort to facilitate the preservation, discovery, access and visualization of data generated. * PetDB holds geochemical data from sub-oceanic igneous and metamorphic rocks generated at mid-ocean ridges including back-arc basins, young seamounts, and old oceanic crust. Data are compiled primarily from the published literature. * SedDB integrates marine and terrestrial sediment geochemical data compiled primarily from the published literature. * Deep Lithosphere Data Set contains geochemical and petrological data from lower crust and upper mantle xenoliths. (more info) * VentDB contains hydrothermal spring geochemistry that hosts and serves the full range of compositional data acquired on seafloor hydrothermal vents from all tectonic settings. * NAVDAT - The Western North American Volcanic and Intrusive Rock Database * Geochron is an application that helps with the onerous task of data management for geochronological and thermochronological studies. * EarthChemPortal is the one-stop-shop for geochemical data that gives users the ability to search federated databases PetDB, NAVDAT, and GEOROC simultaneously, integrated into a common output format. (more info) * The EarthChem Library is a repository for geochemical datasets (analytical data, experimental data, synthesis databases) and other digital resources relevant to the field of geochemistry, contributed by the geochemistry community. * SESAR - System for Earth SAmple Registration | geochemical, geochronological, petrological |
is listed by: CINERGI has parent organization: Columbia University; New York; USA is parent organization of: VentDB is parent organization of: PetDB is parent organization of: SedDB is parent organization of: System for Earth Sample Registration |
NSF | Free, Available for download, Freely available | nlx_154721, r3d100011538 | https://doi.org/10.17616/R3V644 | SCR_002207 | SciCrunch Registry | IEDA: EarthChem | 2026-11-07 11:54:43 | 30 | |||||
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flowCore Resource Report Resource Website 100+ mentions |
flowCore (RRID:SCR_002205) | software resource | A Bioconductor software package for high throughput flow cytometry that provides S4 data structures and basic functions. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure |
is used by: flowBeads is listed by: OMICtools has parent organization: Bioconductor |
PMID:19358741 | Artistic License, v2 | OMICS_05596 | SCR_002205 | SciCrunch Registry | flowCore: Basic structures for flow cytometry data | 2026-11-07 11:54:54 | 376 | |||||||
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MetPetDB Resource Report Resource Website 1+ mentions |
MetPetDB (RRID:SCR_002208) | MetPetDB | data or information resource, data repository, database, service resource, storage service resource | Database / data repository for metamorphic petrology that is being designed and built by a global community of metamorphic petrologists in collaboration with computer scientists at Rensselaer Polytechnic Institute as part of the National Cyberinfrastructure Initiative. | metamorphic, petrology, geology, geochemistry |
is listed by: CINERGI has parent organization: Rensselaer Polytechnic Institute; New York; USA |
NSF EAR 0949318 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154722, r3d100012514 | SCR_002208 | SciCrunch Registry | 2026-11-07 11:54:34 | 1 | |||||||
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Human Brain Project EU Resource Report Resource Website 50+ mentions |
Human Brain Project EU (RRID:SCR_002241) | HBP EU, HBP, European HBP, | data or information resource, funding resource, organization portal, portal | Global, collaborative effort for neuroscience, medicine and computing to understand brain, its diseases and its computational capabilities. Goal is to obtain access to research, data sources, platforms and infrastructures offered by other organisations, and enabling organizations outside HBP to use HBP platforms to pursue their own research. Coordinating these activities is the responsibility of the European Research Programme. | brain, ethics, neuroscience, medicine, computing, treatment, brain disease, neuroinformatics, software development, computational modeling, software, connectomics |
is related to: BigBrain is related to: Julich-Brain Cytoarchitectonic Atlas is parent organization of: subcellular application is parent organization of: Subcellular App |
Restricted | nlx_155553 | SCR_002241 | SciCrunch Registry | European Human Brain Project | 2026-11-07 11:54:35 | 69 | |||||||
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edX Resource Report Resource Website 10+ mentions |
edX (RRID:SCR_002240) | edX | online course, training resource | Massive, open, online courses (MOOCs) and interactive online classes in subjects including law, history, science, engineering, business, social sciences, computer science, public health, and artificial intelligence (AI). This non-profit was created by founding partners Harvard and MIT bringing the best of higher education to students around the world. Online courses are designed to be interesting, fun and rigorous. They are the best online courses, from the best professors and the best schools, spanning dozens of subjects. Some edX courses now offer ID verified Certificates of Achievement. A new way to demonstrate your achievement and showcase your knowledge. | education |
has parent organization: Harvard University; Cambridge; United States has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Freely available | nlx_155551 | SCR_002240 | SciCrunch Registry | 2026-11-07 11:54:44 | 22 | ||||||||
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CIGAL Resource Report Resource Website 1+ mentions |
CIGAL (RRID:SCR_002232) | CIGAL | software resource | Software program that provides accurate real-time stimulus control, behavioral and physiological recording, and synchronization with external devices. It can also provide continuous real-time feedback of task performance and physiological responses. Task programming typically involves a simple text file specifying basic parameter settings (e.g. screen color) and a list of stimulus events, which can include images, animated movies, sound files, text stimuli, video graphics, or commands that communicate with external hardware devices. Multiple video and auditory stimuli can be presented simultaneously. Multi-channel response recording and real-time feedback features require no user programming. Advanced users can add customized stimulus events using CIGAL's real-time programming capabilities. Output files can be automatically created in a variety of output formats (e.g. FSL 3-column files, XML Events files, CSV trial tables). | magnetic resonance, stimulus control, behavioral recording, physiological recording |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Duke University; North Carolina; USA |
Free, Available for download, Freely available | nlx_155528 | http://www.nitrc.org/projects/cigal | http://fourier.biac.duke.edu/wiki/doku.php/jvs:cigal | SCR_002232 | SciCrunch Registry | Compilable Imaging Graphics and Analytical Language | 2026-11-07 11:54:44 | 6 | |||||
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CUAHSI Hydrologic Information System Resource Report Resource Website |
CUAHSI Hydrologic Information System (RRID:SCR_002197) | CUAHSI-HIS, CUAHSI HIS | data access protocol, data analysis software, data or information resource, data processing software, data repository, database, service resource, software application, software resource, storage service resource, web service | An internet-based system for sharing hydrologic data. It is comprised of databases and servers, connected through web services, to client applications, allowing for the publication, discovery and access of data. | hydrologic data, data sharing, water | is listed by: CINERGI | Free, Freely available | r3d100010082, nlx_154706 | http://his.cuahsi.org/ | SCR_002197 | SciCrunch Registry | Consortium of Universities for the Advancement of Hydrologic Science Hydrologic Information System | 2026-11-07 11:54:34 | 0 | ||||||
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NIfTImatlab Resource Report Resource Website 1+ mentions |
NIfTImatlab (RRID:SCR_002230) | NIfTImatlab | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 28, 2025. Software tool that allows the user to operate on NIfTI image files from Matlab. | matlab, nifti, image | has parent organization: New York University; New York; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155526 | SCR_002230 | SciCrunch Registry | NYU CBI NIfTI Matlab tool | 2026-11-07 11:54:38 | 1 | |||||||
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Community Surface Dynamics Modeling System Resource Report Resource Website |
Community Surface Dynamics Modeling System (RRID:SCR_002196) | CSDMS | computational hosting, data or information resource, data repository, data set, service resource, software resource, storage service resource | Model repository and data related to earth-surface dynamics modeling. The CSDMS Modeling Tool (CMT) allows you to run and couple CSDMS model components on the CSDMS supercomputer in a user-friendly software environment. Components in the CMT are based on models, originally submitted to the CSDMS model repository, and now adapted to communicate with other models. The CMT tool is the environment in which you can link these components together to run new simulations. The CMT software runs on your own computer; but it communicates with the CSDMS HPCC, to perform the simulations. Thus, the CMT also offers you a relatively easy way of using the CSDMS supercomputer for model experiments. CSDMS deals with the Earth's surface - the ever-changing, dynamic interface between lithosphere, hydrosphere, cryosphere, and atmosphere. They are a diverse community of experts promoting the modeling of earth surface processes by developing, supporting, and disseminating integrated software modules that predict the movement of fluids, and the flux (production, erosion, transport, and deposition) of sediment and solutes in landscapes and their sedimentary basins. CSDMS: * Produces protocols for community-generated, continuously evolving, open software * Distributes software tools and models * Provides cyber-infrastructure to promote the quantitative modeling of earth surface processes * Addresses the challenging problems of surface-dynamic systems: self-organization, localization, thresholds, strong linkages, scale invariance, and interwoven biology & geochemistry * Enables the rapid development and application of linked dynamic models tailored to specific landscape basin evolution (LBE) problems at specific temporal and spatial scales * Partners with related computational and scientific programs to eliminate duplication of effort and to provide an intellectually stimulating environment * Supports a strong linkage between what is predicted by CSDMS codes and what is observed, both in nature and in physical experiments * Supports the imperatives in Earth Science research | model, earth, surface, surface dynamics |
is listed by: CINERGI has parent organization: University of Colorado Boulder; Colorado; USA |
NSF | PMID:17406970 | Free, Freely available | r3d100012544, nlx_154705 | https://doi.org/10.17616/R3051W | SCR_002196 | SciCrunch Registry | 2026-11-07 11:54:43 | 0 | |||||
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Neotoma Paleoecology Database Resource Report Resource Website 10+ mentions |
Neotoma Paleoecology Database (RRID:SCR_002190) | Neotoma | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Paleoecology database for plio-pleistocene to holocene fossil data with a centralized structure for interdisciplinary, multiproxy analyses and common tool development; discipline-specific data can also be easily accessed. Data currently include North American Pollen (NAPD) and fossil mammals (FAUNMAP). Other proxies (plant macrofossils, beetles, ostracodes, diatoms, etc.) and geographic areas (Europe, Latin America, etc.) will be added in the near future. Data are derived from sites from the last 5 million years. | data sharing, paleoecology, plio-pleistocene, holocene, fossil |
is listed by: CINERGI has parent organization: Pennsylvania State University |
NSF | Free, Available for download, Freely available | nlx_154700, r3d100011761 | SCR_002190 | SciCrunch Registry | NeotomaDB, Neotoma DB | 2026-11-07 11:54:34 | 38 | ||||||
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4D Atlases Construction Resource Report Resource Website 1+ mentions |
4D Atlases Construction (RRID:SCR_002227) | software resource | Software package for constructing longitudinal atlases, which are the necessary steps for many brain-related applications. | magnetic resonance, altas, brain, software package |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA |
PMID:34891818 PMID:31115143 |
Free, Available for download, Freely available | nlx_155688 | http://www.nitrc.org/projects/atlas4d | http://www.med.unc.edu/bric/ideagroup/free-softwares/4d-atlases-construction | SCR_002227 | SciCrunch Registry | 4D Atlas Construction Toolbox, 4D Atlas Construction | 2026-11-07 11:54:34 | 3 | |||||
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Proteome Resources Resource Report Resource Website |
Proteome Resources (RRID:SCR_006468) | commercial organization | THIS RESOURCE IS NO LONGER IN SERVCE, documented on August, 19, 2021. Antibody supplier. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152439 | SCR_006468 | SciCrunch Registry | 2026-11-07 11:56:13 | 0 | |||||||||||
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Indiana University School of Medicine Department of Pharmacology and Toxicology Resource Report Resource Website |
Indiana University School of Medicine Department of Pharmacology and Toxicology (RRID:SCR_006501) | IU Pharmacology and Toxicology, IU Pharmacology Toxicology, Indiana University, Department of Pharmacology and Toxicology | data or information resource, department portal, organization portal, portal | Mission of Department of Pharmacology and Toxicology is to perform research to advance understanding of interactions of chemicals and drugs with living systems and to assist in development of new therapeutics and strategies to treat disease. | has parent organization: Indiana University School of Medicine; Indiana; USA | nif-0000-01966 | http://pharmtox.iusm.iu.edu | SCR_006501 | SciCrunch Registry | Indiana University School of Medicine; Department of Pharmacology Toxicology, Indiana University School of Medicine; Department of Pharmacology and Toxicology, IU Department of Pharmacology Toxicology, IUSM Dept. of Pharmacology and Toxicology, IUSM Department of Pharmacology Toxicology, IU Department of Pharmacology and Toxicology, IUSM Department of Pharmacology and Toxicology | 2026-11-07 11:56:10 | 0 | ||||||||
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Louisiana State University School of Medicine Health Sciences Center Department of Pharmacology and Experimental Therapeutics Resource Report Resource Website |
Louisiana State University School of Medicine Health Sciences Center Department of Pharmacology and Experimental Therapeutics (RRID:SCR_006504) | data or information resource, department portal, organization portal, portal | Department of Pharmacology and Experimental Therapeutics faculty provide professional instruction in schools of Medicine, Dentistry, Nursing, Allied Health and Graduate Studies. Department offers Ph.D. and M.D./Ph.D. degrees and graduate and post doctoral training. | has parent organization: Louisiana State University School of Medicine; Louisiana; USA | nif-0000-06734 | SCR_006504 | SciCrunch Registry | LSUHSC School of Medicine at New Orleans; Department of Pharmacology and Experimental Therapeutics, LSUHSC School of Medicine Department of Pharmacology and Experimental Therapeutics, LSUHSC Department of Pharmacology and Experimental Therapeutics | 2026-11-07 11:56:14 | 0 | ||||||||||
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LeadDiscovery: Providing Information to the Drug Discovery Sector Resource Report Resource Website |
LeadDiscovery: Providing Information to the Drug Discovery Sector (RRID:SCR_006464) | data or information resource, portal, topical portal | LeadDiscovery was founded by life scientists to expedite drug discovery and pharmaceutical development. Based on a solid background of experience from within the pharmaceutical research and development sector, the aim of this resource is to help companies optimize drug discovery and product pipelines through the identification of breaking research and the in depth and expert evaluation of selected therapeutic areas. At the same time it also provides a showcase for pharmaceutical, biotechnology and academic organizations wishing to increase the exposure of their research to the drug development community. LeadDiscovery sits at the center of this sector helping companies to identify commercially viable R&D options from within small biotechs and the public sector. Additionally, it supports the drug discovery and pharmaceutical development community through three key services: DailyUpdates, UpdatesPlus and PharmaReports - DailyUpdates: Launched in 2002 this popular e-mail alert service delivers information on breaking research, new clinical trials, drug development news and recently published market research and pipeline analysis reports. Registration to receive the service is available here - UpdatesPlus: Developed in 2007 as an extension of DailyUpdates, UpdatesPlus provides a monthly in depth analysis of breaking research and development activity in high profile therapeutic areas. - PharmaReports: LeadDiscovery offers a wide range of in depth pharmaceutical reports. It''s reports include market research reports and pipeline analyses. You can search our entire portfolio using LeadDiscovery''s search engine. Alternatively as it are one of the few information providers that has extensive research and development experience, LeadDiscovery occupys a unique position of being able to source reports that accurately meet your needs. If we don''t have a report that fits your requirements, it can produce one through its pharmaceutical consultancy services. LeadDiscovery offers full reports in selected areas of the pharmaceutical and biotech sector. Each of the reports below has been especially selected by LeadDiscovery and categorized into relevant areas: - Oncology - Cancer Immunotherapy - Immunology & Inflammatory Diseases - Infectious Diseases - Psychiatric, Addictive & Sleep Disorders - Pain - Neurodegenerative & Neuroelectrophysiological Disorders - Metabolic & Hormonal Disorders - Cardiovascular Disorders - GenitoUrinary Tract Disorders - Technology - Diagnostics & Devices - Other Theraputic Areas, Pharmaceutical Strategy and Development | drug, e-mail, genitourinary tract disorder, addictive, analysis, biotech, biotechnology, cancer, cardiovascular, clinical trail, development, device, diagnostic, disease, hormonal, immunology, immunotherapy, infectious, inflammatory, life scientist, metabolic, neurodegenerative, neuroelectrophysiological, oncology, pain, pharmaceutical, psychiatric, research, sleep, strategy, technology, therapeutic | nif-0000-10279 | SCR_006464 | SciCrunch Registry | LeadDiscovery | 2026-11-07 11:55:54 | 0 | ||||||||||
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University of British Columbia Department of Pharmacology Resource Report Resource Website |
University of British Columbia Department of Pharmacology (RRID:SCR_006466) | UBC Department of Anesthesiology Pharmacology and Therapeutics | data or information resource, department portal, organization portal, portal | University of British Columbia Department of Anesthesiology, Pharmacology and Therapeutics is an amalgamation of three very important areas of medicine: anesthesiology, pharmacology, and therapeutics. Although we are a joined department with many common interests, each of the sections named above, bring special areas of expertise and learning to the mix. We welcome your interest in our department and look forward to the recruitment of outstanding anesthesiology residents, pharmacology grad students, anesthesiology fellows, and pharmacology post-graduate students. Information on the residency program and postgraduate programs can be found on the appropriate link. Our department now extends across the Province of British Columbia. | has parent organization: University of British Columbia; British Columbia; Canada | nif-0000-02136 | SCR_006466 | SciCrunch Registry | UBC Department of Anesthesiology Pharmacology Therapeutics, University of British Columbia Department of Anesthesiology Pharmacology and Therapeutics | 2026-11-07 11:56:09 | 0 | |||||||||
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ESPript 2.2 Resource Report Resource Website 100+ mentions |
ESPript 2.2 (RRID:SCR_006587) | ESPript | analysis service resource, data analysis service, data processing software, production service resource, service resource, software application, software resource | A utility, whose output is a PostScript file of aligned sequences with graphical enhancements. Its main input is an ascii file of pre-aligned sequences. Optional files allow further rendering. The program calculates a similarity score for each residue of the aligned sequences. The output shows: * Secondary Structures * Aligned sequences * Similarities * Accessibility * Hydropathy * User-supplied markers * Intermolecular contacts In addition, similarity score can be written in the bfactor column of a pdb file, to enable direct display of highly conserved areas. You can run ESPript from this server with the HTML interface. It is configured for a maximum of 1,000 sequences. Links to webESPript * ENDscript: you can upload a PDB file or enter a PDB code such as 1M85. The programs DSSP and CNS are executed via the interface, so as to obtain an ESPript figure with a lot of structural information (secondary structure elements, intermolecular contacts). You can also find homologous sequences with a BLAST search, perform multiple sequence alignments with MULTALIN or CLUSTALW and create an image with BOBSCRIPT or MOLSCRIPT to show similarities on your 3D structure. * ProDom: you can enter a sequence identifier to find homologous domains, perform multiple sequence alignments with MULTALIN and click on the link to ESPript. * Predict Protein: you can receive a mail in text (do not use the HTML option when you submit your request in Predict Protein) with aligned sequences and numerous information including secondary structure prediction. Click on a special html link to upload your mail in ESPript. * NPS(at): you can execute the programs BLAST and CLUSTALW to obtain multiple alignments. You can predict secondary structure elements and click on the link to ESPript. This program started in the laboratory of Dr Richard Wade at the Institut de Biologie Structurale, Grenoble. It moved later to the Laboratory of Molecular Biophysics in Oxford, then to the Institut de Pharmacologie et de Biologie Structurale in Toulouse. It is now developed in the Laboratoire de BioCristallographie of Dr Richard Haser, Institut de Biologie et de Chimie des Prot��������ines, Lyon and in the Laboratoire de Biologie Mol��������culaire et de Relations Plantes-Organismes, group of Dr Daniel Kahn, Institut National de la Recherche Agronomique de Toulouse. | postscript, aligned sequence, sequencing, blast, protein | has parent organization: Institute of Biology and Chemistry of Proteins; Lyon; France | PMID:10320398 PMID:12824317 |
Free for academic use, Fee for commercial users, Licenses for accompanying programs used in ENDscript must be requested separately. | nif-0000-30499 | http://genopole.toulouse.inra.fr/ESPript | SCR_006587 | SciCrunch Registry | Easy Sequencing in Postscript | 2026-11-07 11:56:11 | 395 |
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