Tools   Select Another Resource Report Type

https://github.com/NC4Lab/NC4gate

Code for testing and operating NC4gate modules of modular gate system for autonomous control of rodent behavior. Fully customizable gate system that can be used in behavioral experiments involving rodent mazes (T-maze, Y-maze, radial arm, etc.).

Proper citation: NC4gate (RRID:SCR_026445) Copy   

•   Source: SciCrunch Registry

https://github.com/lvrgb777/STPoseNet

Source code for pose recognition model for laboratory mice based on yolov8. Real-time spatiotemporal network model for robust mouse pose estimation.

Proper citation: STPoseNet (RRID:SCR_026834) Copy   

•   Source: SciCrunch Registry

https://github.com/ThomasAkam/active_commutator

Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation.

Proper citation: Active Commutator (RRID:SCR_027098) Copy   

•   Source: SciCrunch Registry

https://github.com/mtu-most/linear-actuator

Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system.

Proper citation: linear actuator (RRID:SCR_021613) Copy   

•   Source: SciCrunch Registry

https://github.com/KravitzLab/ROBucket

Software tool as ROBucket source code.

Proper citation: Rodent Operant Bucket (RRID:SCR_021610) Copy   

•   Source: SciCrunch Registry

https://github.com/jf-lab/chendoscope

Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems.

Proper citation: chendoscope (RRID:SCR_021616) Copy   

•   Source: SciCrunch Registry

https://github.com/jamieboyd/AutoHeadFix

Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system.

Proper citation: AutoHeadFix (RRID:SCR_021617) Copy   

•   Source: SciCrunch Registry

https://github.com/bsbrl/craniobot

Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot.

Proper citation: craniobot (RRID:SCR_021609) Copy   

•   Source: SciCrunch Registry

https://murphylab.med.ubc.ca/automated-homecages/

Software tool as part of Automated Home Cage Functional Imaging system.

Proper citation: Automated Home-Cage Functional Imaging (RRID:SCR_021607) Copy   

•   Source: SciCrunch Registry

https://github.com/dublon/scintillate

Open source graphical viewer for time series calcium imaging evaluation and pre-processing.

Proper citation: Scintillate (RRID:SCR_021531) Copy   

•   Source: SciCrunch Registry

https://github.com/ribeiro-lab/flyPAD-fpga

FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software.

Proper citation: flyPAD (RRID:SCR_021522) Copy   

•   Source: SciCrunch Registry

https://github.com/KaetzelLab

Operant Box code

Proper citation: pyOS-5 (RRID:SCR_022336) Copy   

•   Source: SciCrunch Registry

https://github.com/J-east/JevonsCameraViewer

Software tool as part of system designed to be easy to build and setup for real time eye tracking.Open source software provides accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

Proper citation: Low Cost Open Source Eye Tracking (RRID:SCR_021497) Copy   

•   Source: SciCrunch Registry

https://github.com/chand-lab/openEyeTrack

Open source software tool used as part of multithreaded eye tracker.Video based eye tracker.

Proper citation: openEyeTrack (RRID:SCR_021401) Copy   

•   Source: SciCrunch Registry

https://github.com/ninscope

Sofware tool for use with NINscope.

Proper citation: NINscope software (RRID:SCR_021583) Copy   

•   Source: SciCrunch Registry

https://github.com/openmv

Software tool as part of OpenMV system.

Proper citation: OpenMV (RRID:SCR_021615) Copy   

•   Source: SciCrunch Registry

https://github.com/pyControl

Open source software Python tool for behavioural experiment control. Part of pyControl system.

Proper citation: pyControl (RRID:SCR_021612) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-ephys/

Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation.

Proper citation: Open Ephys (RRID:SCR_021624) Copy   

•   Source: SciCrunch Registry

https://github.com/aspence/tmilltracker

Open source computer vision controlled treadmill system for small running animals such as insects and mice. Treadmill is controlled by Python software, allowing for flexible control of video tracking parameters, behavioral triggers, distance ran, and feedback. Used for studying locomotor behavior.

Proper citation: tmilltracker (RRID:SCR_023511) Copy   

•   Source: SciCrunch Registry

https://www.sciencedirect.com/science/article/pii/S2352289523000061

Open source automated platform for assessing working memory and prefrontal circuit function. Designed for automated, high-throughput assessments of working memory and simultaneous two-photon imaging in chronic stress studies. Physiology compatible behavioral platform designed specifically for studying circuit mechanisms underlying working memory and related cognitive functions in chronic stress states.

Proper citation: Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory (RRID:SCR_023463) Copy   

•   Source: SciCrunch Registry