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URL: https://simtk.org/home/nast
Proper Citation: NAST (RRID:SCR_006995)
Description: A knowledge-based coarse-grained tool for modeling RNA structures. It produces a diverse set of plausible 3D structures that satisfy user-provided constraints based on: 1. primary sequence 2. known or predicted secondary structure 3. known or predicted tertiary contacts (optional) Additionally, NAST can use residue-resolution experimental data (e.g. hydroxyl radical footprinting) to filter the generated decoy structures. NAST uses an RNA-specific knowledge-based potential in a coarse-grained molecular dynamics engine to generate large numbers of plausible 3D structures that satisfy the constraints given on the secondary and tertiary structure. It then filter these structures based on agreement to the experimental data (if available). This results in a model of the molecule which satisfies all the known residue-resolution data. Imported from BiositeMaps registry
Abbreviations: NAST
Synonyms: The Nucleic Acid Simulation Tool (NAST), The Nucleic Acid Simulation Tool
Resource Type: simulation software, software application, software resource
Keywords: 3d, nucleic acid, primary, rna, secondary, sequence, simulation, structure, tertiary, tool
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Source: SciCrunch Registry
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