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URL: https://gatk.broadinstitute.org/hc/en-us/articles/360036350452-VariantFiltration
Proper Citation: GATK VariantFiltration (RRID:SCR_028441)
Description: Software command-line tool designed for hard-filtering variant callsets (VCF files) by applying user-defined criteria to annotate, rather than remove, low-quality variants. It marks fails in the FILTER field (e.g., using JEXL expressions to filter by DP, QD, or FS), making it essential for filtering small datasets, non-model organisms, or whenever Variant Quality Score Recalibration (VQSR) is not feasible
Resource Type: software application, software resource
Keywords: hard-filtering variant callsets, annotate low-quality variants,
Availability: Free, Freely available
Resource Name: GATK VariantFiltration
Resource ID: SCR_028441
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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