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URL: https://azimuth.hubmapconsortium.org/
Proper Citation: Azimuth (RRID:SCR_021084)
Description: Web application that uses annotated reference dataset to automate processing, analysis, and interpretation of new single cell RNA-seq experiment. Azimuth leverages reference based mapping, pipeline that inputs counts matrix of gene expression in single cells, and performs normalization, visualization, cell annotation, and differential expression. All results can be explored within the app, and easily downloaded for additional downstream analysis.
Resource Type: software resource, web application
Defining Citation: DOI:10.1101/2020.10.12.335331
Keywords: HubMap, BICCN, biomarker discovery, molecular reference maps, annotated reference dataset, automate processing, automate analysis, new single cell RNA-seq experiment interpretation
Availability: Free, Freely available
Resource Name: Azimuth
Resource ID: SCR_021084
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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