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URL: https://www.synapse.org/#!Synapse:syn22345748/wiki/605339
Proper Citation: Exemplar Microscopy Images of Tissues (RRID:SCR_021052)
Description: Reference dataset of multiplexed immunofluorescence microscopy images collected at HMS Laboratory of Systems Pharmacology. Includes set of images of different types for development and benchmarking of computational methods for image processing. As of 4/2/2021, EMIT comprises tissue microarray containing cores from 34 cancer, non-neoplastic diseases, and normal tissue collected from clinical discards under IRB supervised protocol. TMA was imaged using cyclic immunofluorescence method. Additional extensions of EMIT are currently in the planning stages. Long term goal is to compose ImageNet like resource for highly multiplexed images of tissues and tumors by consolidating high quality curated datasets.
Abbreviations: EMIT
Synonyms: Exemplar Microscopy Images of Tissues ( and Tumors)
Resource Type: 2d spatial image, data or information resource, data repository, data set, experimental protocol, image, image collection, image repository, immuno detection protocol, immunofluorescence, narrative resource, service resource, storage service resource
Defining Citation: DOI:10.1101/2021.03.15.435473
Keywords: Reference dataset, multiplexed immunofluorescence microscopy images, tissue microarray, cyclic immunofluorescence, tissues images, tumors images
Related Condition: glioblastoma, lung adenocarcinoma, prostate adenocarcinoma, seminoma, meningioma, mesothelioma, GI stromal tumor, liver cirrhosis, leiomyosarcoma, high-grade serous ovarian cancer, diverticulitis, acute appendicitis, metastatic melanoma, dedifferentiated liposarcoma
Funding: Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation ; NCI U2C CA233262; NCI U2C CA233280; NIH U54 CA225088
Availability: Restricted
Resource Name: Exemplar Microscopy Images of Tissues
Resource ID: SCR_021052
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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