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URL: https://github.com/brentp/mosdepth
Proper Citation: mosdepth (RRID:SCR_018929)
Description: Software command line tool for rapidly calculating genome wide sequencing coverage. Measures depth from BAM or CRAM files at either each nucleotide position in genome or for sets of genomic regions. Used for fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing quick coverage calculation for genomes and exomes.
Resource Type: data processing software, software application, software resource
Defining Citation: PMID:29096012
Keywords: Calculating genome, wide sequencing coverage, depth measurement, BAM file, CRAM file, nucleotide position, genome, genomic region set, WGS exom, targeted sequencing, coverage calculation, exom, bio.tools
Funding: NCI U24 CA209999; NHGRI R01 HG006693; NHGRI R01 HG009141; NIGMS R01 GM124355
Availability: Free, Available for download, Freely available
Resource Name: mosdepth
Resource ID: SCR_018929
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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