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URL: http://deconseq.sourceforge.net/
Proper Citation: DeconSeq (RRID:SCR_007006)
Description: Software tool to automatically detect and efficiently remove sequence contaminations from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. The user can upload FASTA or FASTQ files and select the databases used for contamination screening, including seven human genomes, bacterial genomes, and viral genomes. The user can set the thresholds interactivly and see the results directly using the functionality of the graphical interface. The results can be downloaded in joined or separated files in different formats. The coverage-identity plots provide additional information that can guide the selections of the thresholds using color coded points and connecting lines.
Synonyms: DECONtamination of SEQuence data, decontamination of sequence data
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Keywords: microbiome, sequence analysis, genomic, metagenomic, datasets, contamination, decontamination, FASEB list
Availability: Available for download
Resource Name: DeconSeq
Resource ID: SCR_007006
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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