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URL: http://www.broadinstitute.org/cancer/cga/rna-seqc
Proper Citation: RNA-SeQC (RRID:SCR_005120)
Description: Java software which computes a series of quality control metrics for RNA-seq data and can compare sequencing quality across different samples or experiments to evaluate different experimental parameters. The input can be one or more BAM files, and the output consists of HTML reports and tab delimited files of metrics data.
Abbreviations: RNA-SeQC
Resource Type: software resource
Defining Citation: PMID:22539670
Keywords: java, bam file, html, sequence comparison, rnaseq, rna sequence, bio.tools
Availability: Acknowledgement requested, Public
Resource Name: RNA-SeQC
Resource ID: SCR_005120
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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