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Unexpected effects of different genetic backgrounds on identification of genomic rearrangements via whole-genome next generation sequencing.

BMC genomics | 2016

Whole genome next generation sequencing (NGS) is increasingly employed to detect genomic rearrangements in cancer genomes, especially in lymphoid malignancies. We recently established a unique mouse model by specifically deleting a key non-homologous end-joining DNA repair gene, Xrcc4, and a cell cycle checkpoint gene, Trp53, in germinal center B cells. This mouse model spontaneously develops mature B cell lymphomas (termed G1XP lymphomas).

Pubmed ID: 27769169 RIS Download

Research resources used in this publication

None found

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Associated grants

  • Agency: NCI NIH HHS, United States
    Id: R21 CA184707
  • Agency: NCI NIH HHS, United States
    Id: P30 CA046934
  • Agency: NCI NIH HHS, United States
    Id: R01 CA166325
  • Agency: NCI NIH HHS, United States
    Id: T32 CA174648
  • Agency: NIAID NIH HHS, United States
    Id: R21 AI110777
  • Agency: NCATS NIH HHS, United States
    Id: UL1 TR001082

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Jackson Laboratory (tool)

RRID:SCR_004633

An independent, nonprofit organization focused on mammalian genetics research to advance human health. Their mission is to discover the genetic basis for preventing, treating, and curing human disease, and to enable research for the global biomedical community. Jackson Laboratory breeds and manages colonies of mice as resources for other research institutions and laboratories, along with providing software and techniques. Jackson Lab also conducts genetic research and provides educational material for various educational levels.

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FVB/NJ (tool)

RRID:IMSR_JAX:001800

Mus musculus with name FVB/NJ from IMSR.

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C57BL/6J (tool)

RRID:IMSR_JAX:000664

Mus musculus with name C57BL/6J from IMSR.

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