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BIOCAT: a pattern recognition platform for customizable biological image classification and annotation.

BMC bioinformatics | 2013

Pattern recognition algorithms are useful in bioimage informatics applications such as quantifying cellular and subcellular objects, annotating gene expressions, and classifying phenotypes. To provide effective and efficient image classification and annotation for the ever-increasing microscopic images, it is desirable to have tools that can combine and compare various algorithms, and build customizable solution for different biological problems. However, current tools often offer a limited solution in generating user-friendly and extensible tools for annotating higher dimensional images that correspond to multiple complicated categories.

Pubmed ID: 24090164 RIS Download

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Associated grants

  • Agency: NIMH NIH HHS, United States
    Id: R01 MH091186
  • Agency: NIMH NIH HHS, United States
    Id: R15 MH099569
  • Agency: NIMH NIH HHS, United States
    Id: R15MH099569

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ImageJ (tool)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

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