Binding and Expression Target Analysis

Binding and Expression Target AnalysisSciCrunch Registry/resources/Tools/searchResource NameBinding and Expression Target AnalysisProper CitationBinding and Expression Target Analysis (RRID:SCR_005396)AbbreviationsBETAResource Typeanalysis service resource, data analysis service, production service resource, service resource, software resourceDescriptionA software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes. BETA has three functions: (1) to predict whether the factor has activating or repressive function; (2) to infer the factor''''s target genes; and (3) to identify the motif of the factor and its collaborators which might modulate the factor''''s activating or repressive function. BETA requires ~2GB RAM and 1h for the whole procedure. BETA may run on the web server at Cistrome or may be downloaded.Keywordstranscription factor, chromatin regulator, transcriptome, chip-seq, cistrome, gene expression, target gene, motif, differential gene expressionResource Relationshipsis listed by::OMICtools::SCR_002250; is related to::Galaxy::SCR_006281Related ConditionFundingDefining CitationPMID:24263090AvailabilityRegistration required, Open unspecified licenseSpecification URLAlternate IDsOMICS_00515Alternate URLsOld URLsParent OrganizationResource IDSCR_005396AuthoritySciCrunch RegistrySynonymsBETA - Binding and Expression Target AnalysisLicenseLicense URLsRecord Last Update20261017T202617+0000Record Creation Time20220129T080230+0000Mentions Count455v_uuid2b443379-62a4-58ce-9496-0fab2190ebc0Publications that use this research resourcePMID:42102810PMID:39058663PMID:39748063PMID:39810183PMID:40022259PMID:40124487PMID:39887187PMID:39944339PMID:39975919PMID:39990386PMID:39656438PMID:40198960PMID:39499439PMID:38746362PMID:38748408PMID:38020067PMID:37889077PMID:37941154PMID:39027470PMID:39136992PMID:39165934PMID:39176085PMID:38047585PMID:38117606PMID:38146006PMID:38170777PMID:38192875PMID:38373857PMID:38386414PMID:38226261PMID:38909062PMID:38556722PMID:39207954PMID:39227744PMID:39238829PMID:39252125PMID:39259737PMID:39331563PMID:39333171PMID:39730413PMID:39917436PMID:38851846PMID:38866738PMID:38895257PMID:39570746PMID:39574586PMID:39578497PMID:39604504PMID:39636908PMID:39678350PMID:38254386PMID:38318192PMID:38318389PMID:38402336PMID:38438384PMID:39384739PMID:39418984PMID:39431333PMID:39482487PMID:39509993PMID:38586026PMID:38601667PMID:38611609PMID:38613640PMID:38632120PMID:38671062PMID:38678016PMID:38684677PMID:38684864PMID:38713711PMID:38966666PMID:38991671PMID:38994563PMID:39005294PMID:39702552PMID:37858463PMID:36909629PMID:37272757PMID:38074197PMID:38032714PMID:36978043PMID:37856482PMID:37916202PMID:37932345PMID:37932451PMID:37960715PMID:37985773PMID:37620328PMID:37398384PMID:37422690PMID:37663267PMID:37672226PMID:37676980PMID:37694232PMID:37762054PMID:37100882PMID:37101235PMID:37179423PMID:37199661PMID:37425935