X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Cell Centered Database

THIS RESOURCE IS NO LONGER IN SERVICE, documented June 5, 2017. It has been merged with Cell Image Library. Database for sharing and mining cellular and subcellular high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging that makes unique and valuable datasets available to the scientific community for visualization, reuse and reanalysis. Techniques range from wide field mosaics taken with multiphoton microscopy to 3D reconstructions of cellular ultrastructure using electron tomography. Contributions from the community are welcome. The CCDB was designed around the process of reconstruction from 2D micrographs, capturing key steps in the process from experiment to analysis. The CCDB refers to the set of images taken from microscope the as the Microscopy Product. The microscopy product refers to a set of related 2D images taken by light (epifluorescence, transmitted light, confocal or multiphoton) or electron microscopy (conventional or high voltage transmission electron microscopy). These image sets may comprise a tilt series, optical section series, through focus series, serial sections, mosaics, time series or a set of survey sections taken in a single microscopy session that are not related in any systematic way. A given set of data may be more than one product, for example, it is possible for a set of images to be both a mosaic and a tilt series. The Microscopy Product ID serves as the accession number for the CCDB. All microscopy products must belong to a project and be stored along with key specimen preparation details. Each project receives a unique Project ID that groups together related microscopy products. Many of the datasets come from published literature, but publication is not a prerequisite for inclusion in the CCDB. Any datasets that are of high quality and interest to the scientific community can be included in the CCDB.


Details

  • Resource Type: Resource, database, service resource, storage service resource, image repository, data repository, data or information resource
  • Keywords: electron microscope, light microscopy, electron tomography, electron microscopy, image, cell, microscopy, tomography
  • Resource ID: SCR_002168
  • Proper Citation: (Cell Centered Database, RRID:SCR_002168)
  • Parent Organization: University of California at San Diego; California; USA
  • Related Condition:
  • Funding Agency:
  • Relation: related to: Cell Image Library (CIL), Cell Image Library (CIL), Whole Brain Catalog, Integrated Manually Extracted Annotation, used by: NIF Data Federation, Integrated Datasets, listed by: re3data.org
  • Reference: PMID:18054501, PMID:12160711
  • Website Status: Last checked up
  • Alternate IDs: nif-0000-00007
  • Alternate URLs:
  • Old URLs: http://ccdb.ucsd.edu,
  • v_uuid: 0dc3dda9-b113-5f6c-afa5-e7a1aed4b12c
License URL:
License Information: