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Asymmetric Expression of LincGET Biases Cell Fate in Two-Cell Mouse Embryos.

Cell | 2018

In early mammalian embryos, it remains unclear how the first cell fate bias is initially triggered and amplified toward cell fate segregation. Here, we report that a long noncoding RNA, LincGET, is transiently and asymmetrically expressed in the nucleus of two- to four-cell mouse embryos. Overexpression of LincGET in one of the two-cell blastomeres biases its progeny predominantly toward the inner cell mass (ICM) fate. Mechanistically, LincGET physically binds to CARM1 and promotes the nuclear localization of CARM1, which can further increase the level of H3 methylation at Arginine 26 (H3R26me), activate ICM-specific gene expression, upregulate transposons, and increase global chromatin accessibility. Simultaneous overexpression of LincGET and depletion of Carm1 no longer biased embryonic fate, indicating that the effect of LincGET in directing ICM lineage depends on CARM1. Thus, our data identify LincGET as one of the earliest known lineage regulators to bias cell fate in mammalian 2-cell embryos.

Pubmed ID: 30550787 RIS Download

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This is a list of tools and resources that we have found mentioned in this publication.


RepeatMasker (tool)

RRID:SCR_012954

Software tool that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). Currently over 56% of human genomic sequence is identified and masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including nhmmer, cross_match, ABBlast/WUBlast, RMBlast and Decypher. RepeatMasker makes use of curated libraries of repeats and currently supports Dfam ( profile HMM library ) and RepBase ( consensus sequence library ).

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Adobe Photoshop (tool)

RRID:SCR_014199

Software for image processing, analysis, and editing. The software includes features such as touch capabilities, a customizable toolbar, 2D and 3D image merging, and Cloud access and options.

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CDX2 antibody [EPR2764Y] (antibody)

RRID:AB_1523334

This monoclonal targets Human CDX2

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Anti-gamma H2A.X (phospho S139) antibody (antibody)

RRID:AB_303388

This polyclonal targets gamma H2A.X (phospho S139)

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KMT2H / ASH1 antibody [ASH5H03] (antibody)

RRID:AB_867738

This monoclonal targets KMT2H / ASH1 antibody [ASH5H03]

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Nanog (M-17) (antibody)

RRID:AB_2150123

This polyclonal targets NANOG

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Anti-GFP antibody (antibody)

RRID:AB_300798

This polyclonal targets GFP

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CARM1 antibody (antibody)

RRID:AB_2732840

This monoclonal targets CARM1

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KMT1C / G9a antibody - ChIP Grade (antibody)

RRID:AB_731483

This polyclonal targets KMT1C / G9a antibody - ChIP Grade

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KDM5C / Jarid1C / SMCX antibody - ChIP Grade (antibody)

RRID:AB_881090

This polyclonal targets Human KDM5C / Jarid1C / SMCX

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MBD2 antibody (antibody)

RRID:AB_2139612

This polyclonal targets MBD2

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RING1 antibody (antibody)

RRID:AB_2238272

This polyclonal targets RING1

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KDM3A / JHDM2A antibody [14F8] (antibody)

RRID:AB_2049835

This monoclonal targets KDM3A / JHDM2A antibody [14F8]

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CBX2 antibody (antibody)

RRID:AB_2049270

This polyclonal targets Human cbx2

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Sox-2 (D-17) (antibody)

RRID:AB_661259

This polyclonal targets Sox-2 (D-17)

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HDAC1 antibody - ChIP Grade (antibody)

RRID:AB_305705

This polyclonal targets HDAC1 - ChIP Grade

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EED antibody (antibody)

RRID:AB_2262066

This polyclonal targets EED antibody

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YY1 antibody [EPR4652] (antibody)

RRID:AB_10890662

This monoclonal targets YY1 antibody [EPR4652]

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EDR1 / PHC1 antibody (antibody)

RRID:AB_2042623

This polyclonal targets EDR1 / PHC1 antibody

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CDYL antibody - ChIP Grade (antibody)

RRID:AB_304770

This polyclonal targets CDYL antibody - ChIP Grade

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KDM1A-human (antibody)

RRID:AB_443964

This polyclonal targets KDM1A

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Oct-3/4 (C-20) (antibody)

RRID:AB_2167705

This polyclonal targets Oct-3/4

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SOX21 antibody (antibody)

RRID:AB_2732842

This polyclonal targets SOX21

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CBX2 antibody (antibody)

RRID:AB_2049270

This polyclonal targets Human cbx2

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HDAC1 antibody - ChIP Grade (antibody)

RRID:AB_305705

This polyclonal targets HDAC1 - ChIP Grade

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KMT2H / ASH1 antibody [ASH5H03] (antibody)

RRID:AB_867738

This monoclonal targets KMT2H / ASH1 antibody [ASH5H03]

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Sox-2 (D-17) (antibody)

RRID:AB_661259

This polyclonal targets Sox-2 (D-17)

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CARM1 antibody (antibody)

RRID:AB_2732840

This monoclonal targets CARM1

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Anti-GFP antibody (antibody)

RRID:AB_300798

This polyclonal targets GFP

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KDM5C / Jarid1C / SMCX antibody - ChIP Grade (antibody)

RRID:AB_881090

This polyclonal targets Human KDM5C / Jarid1C / SMCX

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MBD2 antibody (antibody)

RRID:AB_2139612

This polyclonal targets MBD2

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KDM3A / JHDM2A antibody [14F8] (antibody)

RRID:AB_2049835

This monoclonal targets KDM3A / JHDM2A antibody [14F8]

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EDR1 / PHC1 antibody (antibody)

RRID:AB_2042623

This polyclonal targets EDR1 / PHC1 antibody

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EED antibody (antibody)

RRID:AB_2262066

This polyclonal targets EED antibody

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KMT1C / G9a antibody - ChIP Grade (antibody)

RRID:AB_731483

This polyclonal targets KMT1C / G9a antibody - ChIP Grade

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CDYL antibody - ChIP Grade (antibody)

RRID:AB_304770

This polyclonal targets CDYL antibody - ChIP Grade

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RING1 antibody (antibody)

RRID:AB_2238272

This polyclonal targets RING1

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YY1 antibody [EPR4652] (antibody)

RRID:AB_10890662

This monoclonal targets YY1 antibody [EPR4652]

View all literature mentions

KDM1A-human (antibody)

RRID:AB_443964

This polyclonal targets KDM1A

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SOX21 antibody (antibody)

RRID:AB_2732842

This polyclonal targets SOX21

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Oct-3/4 (C-20) (antibody)

RRID:AB_2167705

This polyclonal targets Oct-3/4

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Nanog (M-17) (antibody)

RRID:AB_2150123

This polyclonal targets NANOG

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CDX2 antibody [EPR2764Y] (antibody)

RRID:AB_1523334

This monoclonal targets Human CDX2

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Anti-gamma H2A.X (phospho S139) antibody (antibody)

RRID:AB_303388

This polyclonal targets gamma H2A.X (phospho S139)

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