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Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell.

Neuron | 2017

The size and shape of dendritic arbors are prime determinants of neuronal connectivity and function. We asked how ON-OFF direction-selective ganglion cells (ooDSGCs) in mouse retina acquire their bistratified dendrites, in which responses to light onset and light offset are segregated to distinct strata. We found that the transcriptional regulator Satb1 is selectively expressed by ooDSGCs. In Satb1 mutant mice, ooDSGC dendrites lack ON arbors, and the cells selectively lose ON responses. Satb1 regulates expression of a homophilic adhesion molecule, Contactin 5 (Cntn5). Both Cntn5 and its co-receptor Caspr4 are expressed not only by ooDSGCs, but also by interneurons that form a scaffold on which ooDSGC ON dendrites fasciculate. Removing Cntn5 from either ooDSGCs or interneurons partially phenocopies Satb1 mutants, demonstrating that Satb1-dependent Cntn5 expression in ooDSGCs leads to branch-specific homophilic interactions with interneurons. Thus, Satb1 directs formation of a morphologically and functionally specialized compartment within a complex dendritic arbor.

Pubmed ID: 28781169 RIS Download

Research resources used in this publication

Additional research tools detected in this publication

Antibodies used in this publication

Associated grants

  • Agency: NEI NIH HHS, United States
    Id: R01 EY022073
  • Agency: NINDS NIH HHS, United States
    Id: R37 NS029169

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


International Mouse Phenotyping Consortium (IMPC) (tool)

RRID:SCR_006158

Center that produces knockout mice and carries out high-throughput phenotyping of each line in order to determine function of every gene in mouse genome. These mice will be preserved in repositories and made available to scientific community representing valuable resource for basic scientific research as well as generating new models for human diseases.

View all literature mentions

Anti-Tyrosine Hydroxylase Antibody (antibody)

RRID:AB_90755

This polyclonal targets Tyrosine Hydroxylase

View all literature mentions

RFP antibody [5F8] (antibody)

RRID:AB_2336064

This monoclonal targets dsRed, mRFP, mCherry , mPlum, mRFPruby

View all literature mentions

CNTN5 Antibody (antibody)

RRID:AB_11019867

This unknown targets CNTN5

View all literature mentions

Contactin 2 Antibody (antibody)

RRID:AB_11028475

This unknown targets Contactin 2

View all literature mentions

Contactin 1 Antibody (antibody)

RRID:AB_11026884

This unknown targets Contactin 1

View all literature mentions

FOXP2-human (antibody)

RRID:AB_2107107

This polyclonal targets FOXP2

View all literature mentions

Opsin 4 Polyclonal Antibody (antibody)

RRID:AB_2267547

This unknown targets Opsin 4

View all literature mentions

Brn-3 (C-13) (antibody)

RRID:AB_673441

This polyclonal targets POU4F2

View all literature mentions

Anti-Brn-3a Antibody, POU-domain protein, clone 5A3.2 (antibody)

RRID:AB_94166

This monoclonal targets Brn3a (POU-domain protein)

View all literature mentions

PKC antibody [MC5] (antibody)

RRID:AB_303507

This monoclonal targets PKC

View all literature mentions

Calbindin D-28k (antibody)

RRID:AB_10000340

This polyclonal targets Calbindin D-28k

View all literature mentions

Anti-RBPMS Antibody (antibody)

RRID:AB_2492226

This polyclonal targets RBPMS

View all literature mentions

SATB1 (N-14) (antibody)

RRID:AB_2184337

This polyclonal targets SATB1

View all literature mentions

SATB1 antibody [EPR3951] (antibody)

RRID:AB_10862207

This monoclonal targets SATB1 antibody [EPR3951]

View all literature mentions

anti-GFP (antibody)

RRID:AB_2630379

This polyclonal targets native GFP from Aequorea victoria

View all literature mentions

Anti-GFP antibody (antibody)

RRID:AB_300798

This polyclonal targets GFP

View all literature mentions

B6.Cg-Tg(Hlxb9-GFP)1Tmj/J (organism)

RRID:IMSR_JAX:005029

Mus musculus with name B6.Cg-Tg(Hlxb9-GFP)1Tmj/J from IMSR.

View all literature mentions

GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

View all literature mentions

ZEISS ZEN Microscopy Software (software resource)

RRID:SCR_013672

User interface software for Carl Zeiss light microscopy imaging systems. ZEN is the universal user interface you will see on every imaging system from ZEISS. After selecting fluorophore, ZEN applies the necessary settings to collect and organize data.

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

Integrative Genomics Viewer (software resource)

RRID:SCR_011793

A high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

View all literature mentions

Cuffdiff (software resource)

RRID:SCR_001647

Software that estimates expression at transcript-level resolution and controls for variability evident across replicate libraries.

View all literature mentions

Cufflinks (software resource)

RRID:SCR_014597

Software tool for transcriptome assembly and differential expression analysis for RNA-Seq. Includes script called cuffmerge that can be used to merge together several Cufflinks assemblies. It also handles running Cuffcompare as well as automatically filtering a number of transfrags that are likely to be artifacts. If the researcher has a reference GTF file, the researcher can provide it to the script to more effectively merge novel isoforms and maximize overall assembly quality.

View all literature mentions

TopHat (software resource)

RRID:SCR_013035

Software tool for fast and high throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies. Fast splice junction mapper for RNA-Seq reads. Aligns RNA-Seq reads to mammalian-sized genomes using ultra high-throughput short read aligner Bowtie, and then analyzes mapping results to identify splice junctions between exons.TopHat2 is accurate alignment of transcriptomes in presence of insertions, deletions and gene fusions.

View all literature mentions

STOCK Slc17a6tm2(cre)Lowl/J (organism)

RRID:IMSR_JAX:016963

Mus musculus with name STOCK Slc17a6tm2(cre)Lowl/J from IMSR.

View all literature mentions

Cntn5tm1Kwat/Cntn5tm1Kwat (organism)

RRID:MGI:3051993

Allele Detail: Targeted This is a legacy resource.

View all literature mentions

STOCK Tg(Cartpt-cre)1Aibs/J (organism)

RRID:IMSR_JAX:009615

Mus musculus with name STOCK Tg(Cartpt-cre)1Aibs/J from IMSR.

View all literature mentions

STOCK Tg(Six3-cre)69Frty/GcoJ (organism)

RRID:IMSR_JAX:019755

Mus musculus with name STOCK Tg(Six3-cre)69Frty/GcoJ from IMSR.

View all literature mentions

B6.Cg-Tg(Thy1-YFP)HJrs/J (organism)

RRID:IMSR_JAX:003782

Mus musculus with name B6.Cg-Tg(Thy1-YFP)HJrs/J from IMSR.

View all literature mentions

B6.Cg-Tg(Thy1-EYFP)15Jrs/J (organism)

RRID:IMSR_JAX:005630

Mus musculus with name B6.Cg-Tg(Thy1-EYFP)15Jrs/J from IMSR.

View all literature mentions

B6.129(SJL)-Kcng4tm1.1(cre)Jrs/J (organism)

RRID:IMSR_JAX:029414

Mus musculus with name B6.129(SJL)-Kcng4tm1.1(cre)Jrs/J from IMSR.

View all literature mentions

STOCK Tg(Jam2-cre/ERT2)2Jrs/J (organism)

RRID:IMSR_JAX:029417

Mus musculus with name STOCK Tg(Jam2-cre/ERT2)2Jrs/J from IMSR.

View all literature mentions

STOCK Tg(Cdh3-EGFP)BK102Gsat/Mmnc (organism)

RRID:MMRRC_000236-UNC

Mus musculus with name STOCK Tg(Cdh3-EGFP)BK102Gsat/Mmnc from MMRRC.

View all literature mentions

STOCK Tg(Drd4-EGFP)W18Gsat/Mmnc (organism)

RRID:MMRRC_000231-UNC

Mus musculus with name STOCK Tg(Drd4-EGFP)W18Gsat/Mmnc from MMRRC.

View all literature mentions

PKC antibody [MC5] (antibody)

RRID:AB_303507

This monoclonal targets PKC

View all literature mentions

Calbindin D-28k (antibody)

RRID:AB_10000340

This polyclonal targets Calbindin D-28k

View all literature mentions

Anti-RBPMS Antibody (antibody)

RRID:AB_2492226

This polyclonal targets RBPMS

View all literature mentions

SATB1 (N-14) (antibody)

RRID:AB_2184337

This polyclonal targets SATB1

View all literature mentions

anti-GFP (antibody)

RRID:AB_2630379

This polyclonal targets native GFP from Aequorea victoria

View all literature mentions

SATB1 antibody [EPR3951] (antibody)

RRID:AB_10862207

This monoclonal targets SATB1 antibody [EPR3951]

View all literature mentions

Anti-GFP antibody (antibody)

RRID:AB_300798

This polyclonal targets GFP

View all literature mentions

Anti-Tyrosine Hydroxylase Antibody (antibody)

RRID:AB_90755

This polyclonal targets Tyrosine Hydroxylase

View all literature mentions

Anti-Tyrosine Hydroxylase Antibody (antibody)

RRID:AB_90755

This polyclonal targets Tyrosine Hydroxylase

View all literature mentions

Anti-Tyrosine Hydroxylase Antibody (antibody)

RRID:AB_90755

This polyclonal targets Tyrosine Hydroxylase

View all literature mentions

B6.Cg-Tg(Hlxb9-GFP)1Tmj/J (organism)

RRID:IMSR_JAX:005029

Mus musculus with name B6.Cg-Tg(Hlxb9-GFP)1Tmj/J from IMSR.

View all literature mentions

CNTN5 Antibody (antibody)

RRID:AB_11019867

This unknown targets CNTN5

View all literature mentions

Contactin 2 Antibody (antibody)

RRID:AB_11028475

This unknown targets Contactin 2

View all literature mentions

RFP antibody [5F8] (antibody)

RRID:AB_2336064

This monoclonal targets dsRed, mRFP, mCherry , mPlum, mRFPruby

View all literature mentions

Cuffdiff (software resource)

RRID:SCR_001647

Software that estimates expression at transcript-level resolution and controls for variability evident across replicate libraries.

View all literature mentions

Opsin 4 Polyclonal Antibody (antibody)

RRID:AB_2267547

This unknown targets Opsin 4

View all literature mentions

Contactin 1 Antibody (antibody)

RRID:AB_11026884

This unknown targets Contactin 1

View all literature mentions

FOXP2-human (antibody)

RRID:AB_2107107

This polyclonal targets FOXP2

View all literature mentions

Anti-Brn-3a Antibody, POU-domain protein, clone 5A3.2 (antibody)

RRID:AB_94166

This monoclonal targets Brn3a (POU-domain protein)

View all literature mentions

Brn-3 (C-13) (antibody)

RRID:AB_673441

This polyclonal targets POU4F2

View all literature mentions

B6.Cg-Tg(Hlxb9-GFP)1Tmj/J (organism)

RRID:IMSR_JAX:005029

Mus musculus with name B6.Cg-Tg(Hlxb9-GFP)1Tmj/J from IMSR.

View all literature mentions

B6.Cg-Tg(Hlxb9-GFP)1Tmj/J (organism)

RRID:IMSR_JAX:005029

Mus musculus with name B6.Cg-Tg(Hlxb9-GFP)1Tmj/J from IMSR.

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

ZEISS ZEN Microscopy Software (software resource)

RRID:SCR_013672

User interface software for Carl Zeiss light microscopy imaging systems. ZEN is the universal user interface you will see on every imaging system from ZEISS. After selecting fluorophore, ZEN applies the necessary settings to collect and organize data.

View all literature mentions

STOCK Tg(Six3-cre)69Frty/GcoJ (organism)

RRID:IMSR_JAX:019755

Mus musculus with name STOCK Tg(Six3-cre)69Frty/GcoJ from IMSR.

View all literature mentions

STOCK Tg(Cartpt-cre)1Aibs/J (organism)

RRID:IMSR_JAX:009615

Mus musculus with name STOCK Tg(Cartpt-cre)1Aibs/J from IMSR.

View all literature mentions

B6.Cg-Tg(Thy1-YFP)HJrs/J (organism)

RRID:IMSR_JAX:003782

Mus musculus with name B6.Cg-Tg(Thy1-YFP)HJrs/J from IMSR.

View all literature mentions

Cntn5tm1Kwat/Cntn5tm1Kwat (organism)

RRID:MGI:3051993

Allele Detail: Targeted This is a legacy resource.

View all literature mentions

B6.129(SJL)-Kcng4tm1.1(cre)Jrs/J (organism)

RRID:IMSR_JAX:029414

Mus musculus with name B6.129(SJL)-Kcng4tm1.1(cre)Jrs/J from IMSR.

View all literature mentions

STOCK Tg(Cdh3-EGFP)BK102Gsat/Mmnc (organism)

RRID:MMRRC_000236-UNC

Mus musculus with name STOCK Tg(Cdh3-EGFP)BK102Gsat/Mmnc from MMRRC.

View all literature mentions

STOCK Tg(Jam2-cre/ERT2)2Jrs/J (organism)

RRID:IMSR_JAX:029417

Mus musculus with name STOCK Tg(Jam2-cre/ERT2)2Jrs/J from IMSR.

View all literature mentions

B6.Cg-Tg(Thy1-EYFP)15Jrs/J (organism)

RRID:IMSR_JAX:005630

Mus musculus with name B6.Cg-Tg(Thy1-EYFP)15Jrs/J from IMSR.

View all literature mentions

STOCK Tg(Drd4-EGFP)W18Gsat/Mmnc (organism)

RRID:MMRRC_000231-UNC

Mus musculus with name STOCK Tg(Drd4-EGFP)W18Gsat/Mmnc from MMRRC.

View all literature mentions

STOCK Slc17a6tm2(cre)Lowl/J (organism)

RRID:IMSR_JAX:016963

Mus musculus with name STOCK Slc17a6tm2(cre)Lowl/J from IMSR.

View all literature mentions

GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

View all literature mentions

Integrative Genomics Viewer (software resource)

RRID:SCR_011793

A high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

View all literature mentions

Cufflinks (software resource)

RRID:SCR_014597

Software tool for transcriptome assembly and differential expression analysis for RNA-Seq. Includes script called cuffmerge that can be used to merge together several Cufflinks assemblies. It also handles running Cuffcompare as well as automatically filtering a number of transfrags that are likely to be artifacts. If the researcher has a reference GTF file, the researcher can provide it to the script to more effectively merge novel isoforms and maximize overall assembly quality.

View all literature mentions

TopHat (software resource)

RRID:SCR_013035

Software tool for fast and high throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies. Fast splice junction mapper for RNA-Seq reads. Aligns RNA-Seq reads to mammalian-sized genomes using ultra high-throughput short read aligner Bowtie, and then analyzes mapping results to identify splice junctions between exons.TopHat2 is accurate alignment of transcriptomes in presence of insertions, deletions and gene fusions.

View all literature mentions