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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

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Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Kids First Data Resource PortalResource, disease-related portal, topical portal, database, organization portal, service resource, portal, storage service resource, data repository, data or information resourcePortal for analysis and interpretation of pediatric genomic and clinical data to advance personalized medicine for detection, therapy, and management of childhood cancer and structural birth defects. For patients, researchers, and clinicians to create centralized database of well curated clinical and genetic sequence data from patients with childhood cancer or structural birth defects.pediatric, genomic, clinical, disease, data, children, cancer, birth, defect, analysisSCR_016493(Kids First Data Resource Portal, RRID:SCR_016493)pediatric cancer, birth defectNIH, the Common Fund’s Gabriella Miller Kids First Pediatric Research Programrecommended by: National Library of Medicine, BRAIN InitiativeLast checked downSCR_016553https://commonfund.nih.gov/kidsfirst, https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001168.v1.p1, https://commonfund.nih.gov/kidsfirst
Diabetes Epigenome AtlasResource, disease-related portal, topical portal, database, portal, atlas, data or information resourceCollects and provides data on the human genome and epigenome to facilitate genetic studies of type 2 diabetes and its complications. A component of the AMP T2D consortium, which includes the National Institute for Diabetes and Digestive and Kidney Diseases (NIDDK) and an international collaboration of researchers.collect, provide, data, human, genome, epigenome, genetic, study, type 2 diabetesSCR_016441(Diabetes Epigenome Atlas, RRID:SCR_016441)Stanford University; Stanford; California , University of California at San Diego; California; USA type 2 diabetesthe NIDDKLast checked upSCR_016537
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Resource, disease-related portal, topical portal, resource, service resource, portal, access service resource, data or information resourceCore facility that provides scientific and budgetary oversight for all CCEH activities. This includes training programs, high school summer internships, and and pilot and feasibility program for new projects.cancer research, administrative support, budgetary oversight, training programsSCR_015320( Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology , RRID:SCR_015320)Fred Hutchinson Cancer Research Center cancerNIDDKlisted by: NIDDK Information NetworkLast checked upSCR_015922
BioinformaticswebResource, topical portal, portal, data or information resourceOpen Access Bioinformatics resource portal.bioinformaticsSCR_011988(Bioinformaticsweb, RRID:SCR_011988)listed by: OMICtoolsLast checked upOMICS_01729
NRDRResource, software resource, topical portal, web application, portal, data or information resourceSearchable portal for public non-coding RNA databases. The databases are classified by RNA family, information source, information content, and available search mechanisms.public database portal, non coding rna, non coding rna portalSCR_002458(NRDR, RRID:SCR_002458)University of Sao Paulo; Sao Paulo; Brazil listed by: OMICtoolsPMID:22336709Last checked downOMICS_01702http://www.ime.usp.br/~durham/ncrnadatabases/index.php
EGAPPResource, topical portal, portal, data or information resourceInitiative to develop a systematic, evidence-based process for evaluating genetic tests and other applications of genomic technology that are rapidly moving from research to use in clinical practice. A key objective of this process is to provide objective, timely, and credible information that is clearly linked to the scientific evidence on specific applications of genetic and genomic tests. The primary focus of EGAPP activities is an independent, nonfederal expert panel, the EGAPP Working Group. Other components of the EGAPP initiative include a federal interagency, the CDC staff and consultants, and an EGAPP initiative evaluation team.genetic test, genomics, clinical, genomic technology, evaluation, public healthSCR_004189(EGAPP, RRID:SCR_004189)Centers for Disease Control and Prevention listed by: OMICtoolsLast checked upOMICS_01538
CDPResource, topical portal, portal, funding resource, data or information resourceNational program to improve the diagnosis and assessment of cancer by moving scientific knowledge into clinical practice by coordinating and funding resources and research for the development of innovative in vitro diagnostics, novel diagnostic technologies and appropriate human specimens. The Cancer Diagnosis Program is divided into four branches: Biorepository and Biospecimen Research Branch (BBRB), Diagnostic Biomarkers and Technology Branch (DBTB), Diagnostics Evaluation Branch (DEB), and the Pathology Investigation and Resources Branch (PIRB).cancer research, cancer funding, cancer research fundingSCR_004236(CDP, RRID:SCR_004236)DCTD CancerNCIlisted by: OMICtoolsLast checked upOMICS_01536
Phylogeny ProgramsResource, data analysis service, production service resource, analysis service resource, topical portal, service resource, portal, software resource, data or information resource392 phylogeny software packages and 54 free web servers describing all known software for inferring phylogenies (evolutionary trees). Submissions are welcome. Programs are listed by methods available, by computer systems on which they work, cross-referenced by method and by computer system, by ones which analyze particular kinds of data, to show the most recent listings, or to show ones most recently changed.phylogenySCR_010797(Phylogeny Programs, RRID:SCR_010797)University of Washington; Seattle; USA NSFlisted by: OMICtoolsLast checked upOMICS_00219
NIAID Malaria Research ProgramResource, disease-related portal, topical portal, portal, video resource, data or information resourceNearly one million people die of malaria every year, mostly infants, young children, and pregnant women, and most of them in Africa. Finding effective ways to control and eventually eradicate the disease is a high priority of NIAID. For the latest in NIAID-supported malaria research, NIAID Strategic Plan for Malaria Research, NIAID Research Agenda for Malaria, Quick Facts, Transmission, Symptoms, Diagnosis, Treatment, Prevention, Publications, News and Events please refer to this site.SCR_006743(NIAID Malaria Research Program, RRID:SCR_006743)Last checked upnlx_99888
LifeLink FoundationResource, topical portal, biomaterial supply resource, tissue bank, portal, material resource, data or information resourceLifeLink Foundation is a non-profit community service organization dedicated to the recovery of life-saving and life-enhancing organs and tissue for transplantation therapy. The Foundation works in a sensitive, diligent, and compassionate manner to facilitate the donation of desperately needed organs and tissues for waiting patients, support research efforts to enhance the available supply of organs and tissue for transplant patients, improve clinical outcomes of patients post transplantation and works closely with the United Network For Organ Sharing (UNOS) to support its goals. We are committed to inspiring the public to save lives through organ donation. To make organ transplant a reality, LifeLink Foundation focuses its attention in a number of areas: Immunology Laboratory, Public Education, Fundraising, Organ Recovery.SCR_004967(LifeLink Foundation, RRID:SCR_004967)Donate Life America listed by: One Mind Biospecimen Bank ListingLast checked upnlx_96590
GeneTestsResource, topical portal, database, analysis service resource, material analysis service, narrative resource, service resource, portal, production service resource, biomaterial analysis service, training material, data or information resourceThe GeneTests Web site, a publicly funded medical genetics information resource developed for physicians, other healthcare providers, and researchers, is available at no cost to all interested persons. By providing current, authoritative information on genetic testing and its use in diagnosis, management, and genetic counseling, GeneTests promotes the appropriate use of genetic services in patient care and personal decision making. At This Site: * GeneReviews: Expert-authored peer-reviewed disease descriptions * Laboratory Directory: International directory of genetic testing laboratories * Clinic Directory: International directory of genetics and prenatal diagnosis clinics * Educational Materials: Illustrated glossary, information on genetic services, PowerPoint presentations, annotated Internet resources We comply with the HONcode standard for trustworthy health information.SCR_010725(GeneTests, RRID:SCR_010725) NCBI , University of Washington; Seattle; USA DOE, NCI, NHGRI, NLMLast checked upnlx_94696
Fox Chase Cancer CenterResource, topical portal, portal, data or information resourceFox Chase Cancer Center is the region''s only hospital devoted entirely to cancer treatment, research and prevention. Our 100-bed hospital, located in Philadelphia, is consistently ranked by U.S. News and World Report among the top cancer centers in the nation. Our nationally and internationally recognized staff provides consultations and treatment recommendations for all types of adult cancer. Fox Chase Cancer Center is an independent, nonprofit institution formed in 1974 by the union of American Oncologic Hospital (one the the nation''s first cancer hospitals, established in 1904) and the Institute for Cancer Research (founded in 1927). Fox Chase was also among the first institutions to be designated a National Cancer Institute Comprehensive Cancer Center in 1974. In September 2000, the Hospital of Fox Chase Cancer Center became the nation''s first comprehensive cancer center and Pennsylvania''s first hospital to receive Magnet status for nursing excellence from the American Nurses Credentialing Center, which renewed this honor in 2004 and again in 2009, making it the first hospital in Pennsylvania to have achieved two successful Magnet renewals. The Women''s Cancer Center builds on Fox Chase''s world-renowned expertise in breast and gynecologic cancers. The Center offers women a place where they can receive coordinated, state-of-the-art care, support services, and education all under one roof.SCR_004974(Fox Chase Cancer Center, RRID:SCR_004974)Last checked downnlx_93591
OBIWarehouseResource, topical portal, portal, data or information resourceOBIWarehouse (Open Biological Warehouse) aims at integrating several biological data sources into a unified database. Content includes 3D structural data, Protein-related data, Metabolic-related data, Genomic-related data, and Biological classification.SCR_010729(OBIWarehouse, RRID:SCR_010729)PrabiG Last checked upnlx_93231
Cystic Fibrosis FoundationResource, topical portal, portal, funding resource, data or information resourceThe mission of the Cystic Fibrosis Foundation, a nonprofit donor-supported organization, is to assure the development of the means to cure and control cystic fibrosis and to improve the quality of life for those with the disease. The Foundation is the leading organization in the United States devoted to cystic fibrosis. It funds and accredits more than 115 CF care centers, 95 adult care programs and 50 affiliate programs, and more than 75 chapters and branch offices nationwide. The Cystic Fibrosis Foundation is one of the most efficient organizations of its kind and is an accredited charity of the Better Business Bureau''s Wise Giving Alliance. Until we conquer this disease, our team will work tirelessly to extend and enhance life for those with cystic fibrosis by functioning as: * Scientific pioneers, blazing new trails in CF research; * Fund-raisers, securing the money needed to support our efforts; * Advocates, keeping CF a top priority in government, industry and research; * Investors, funding drug discovery and development; * Caregivers, linking patients and families to specialized CF care; and * Family, offering support, information and resources.SCR_010726(Cystic Fibrosis Foundation, RRID:SCR_010726)Last checked upnlx_91994
Medscape Education - Medscape CME/CEResource, continuing medical education, topical portal, data or information resource, portal, training resourceA portal with listings of continuing medical education opportunities such as radiology, pediatrics, and HIV/AIDS specializations.education, medical, continuing, portal, informationSCR_000936(Medscape Education - Medscape CME/CE, RRID:SCR_000936)Last checked downnlx_91735
Biobank SuisseResource, topical portal, database, biomaterial supply resource, service resource, portal, material resource, training service resource, data or information resourceThe foundation biobank-suisse (BBS) is a collaborative network of existing and future research biobanks in Switzerland. The primary goals are: 1. to provide researchers a quick overview of available human biospecimens (by using the web query interface) and up to date person related data; and 2. to provide biobankers with services to further improve the quality of biobanks in Switzerland (e.g. information about up-to-date IT and database software for biobanking; solutions for ethical, legal, and social issues; develop common platform for biobankers; etc.). We maintain a database with data about patients and biospecimens. The database can be queried from our web-site. Once the researcher has found suitable biospecimens we will bring him in contact with the biobanks, which have collected the biospecimen. The researcher and the biobank manager will then discuss the next step without further participation of the foundation biobank-suisse. We provide advice and support to biobank manager, who are in the process to start a biobanking activity for material from humans. Well established biobanks can benefit from our help in realizing specific projects to improve their operations. BBS was founded in December 2005 as an initiative of Oncosuisse and SWISS BRIDGE with the goal to build a collaborative network of existing and future biobanks for research in Switzerland. BBS has currently information from about 60 000 biospecimens and 10 000 patients. This information is provided by the biobanks shown under the Partner biobank menu item and include: * Institut de Pathologie, Centre hospitalier universitaire vaudois (CHUV) * Institut f??r Pathologie Universit??tsspital Basel * Institut f??r Pathologie der Universit??t Bern BBS has entered in a closed collaboration with SAKK''s (Swiss Working Group on Clinical Cancer Research) IT department. BBS''s server is run by SAKK and technical support is provided by the SAKK IT department. BBS is an active member of ISBER (International Society of Biological and Environmental Repositories) the international society of biobanks. BBS also joint BBMRI (an European initiative to build an pan-European network of biobanks.clinical data, biospecimen, tissue microarray, cancer, breast cancer, prostate cancerSCR_004935(Biobank Suisse, RRID:SCR_004935)Includes: Cancer, Breast cancer, Prostate cancerrelated to: SAPALDIA, listed by: One Mind Biospecimen Bank ListingLast checked upnlx_89853
Boyce Thompson Institute for Plant ResearchResource, topical portal, portal, data or information resourceBTI is unique in being a private, not-for-profit research institute dedicated to plant biology, and located on a major university campus. Its mission is to advance and communicate scientific knowledge in plant biology to improve agriculture, protect the environment, and enhance human health. The institute was founded in Yonkers, New York, next to the home of its benefactor, William Boyce Thompson. In the mid-1970''s, however, it was recognized that a physical presence on a university campus would catapult the institute to a higher level of research, and the Cornell affiliation was born. BTI hires its own faculty, postdoctoral scholars and technicians, but also hosts undergraduate and graduate researchers from Cornell. BTI faculty generally have adjunct appointments at Cornell, and participate in graduate training and other university affairs. As envisioned in the Agreement of Affiliation, the partnership is advantageous for both parties, and contributes to a singularly strong environment for fundamental plant research on the campus. William Boyce Thompson founded BTI in 1924 on the premise that basic plant research leads to real benefits for people. Many potential applications of BTI research are to improve crops by increasing yield or nutritional content, or decreasing the need for harmful fertilizers and pesticides. Other research could lead to inexpensive plant-made vaccines, or even shed light on the human immune system. With aims like these in mind, scientists at BTI study life at the scale of genes and proteins to learn about processes such as how plants detect light, or how they respond when aphids bite into them. Along with research, BTI''s mission includes environmental responsibility and outreach to teachers, students, and community members. Though it remains an independent, non-profit institution, BTI is affiliated with Cornell University and is located on its Ithaca, New York campus.SCR_010716(Boyce Thompson Institute for Plant Research, RRID:SCR_010716)Cornell University; New York; USA Last checked upnlx_89613
NeuroDevNetResource, topical portal, training resource, portal, funding resource, data or information resourceNeuroDevNet, a Canadian Network of Centres of Excellence (NCE), is dedicated to helping children overcome neurodevelopmental disorders. Network investigators seek to understand the causes of neurological deficits, and to transfer this knowledge to health care professionals, policy makers, and communities of interest. NeuroDevNet works with its partners in academia, the community, not-for-profit sector, industry, and government, and across traditional disciplinary boundaries and sectors, to ensure generated knowledge is translated into tangible diagnostic, preventative, therapeutic, social, economic, and health benefits for all. NeuroDevNet supports transformative research, provides training to build a new generation of Canadian researchers, strengthens communities with the right tools and information, and translates research findings into early diagnostic, preventative, and therapeutic strategies for children with neurological disorders to live healthier lives. Currently, the network''s research focuses on autism spectrum disorder, cerebral palsy, and fetal alcohol spectrum disorder. These demonstration projects are supported by NeuroDevNet''s central infrastructure and cores, including Neuroethics, Neuroinformatics, and Knowledge Translation.SCR_004925(NeuroDevNet, RRID:SCR_004925)University of British Columbia; British Columbia; Canada Networks of Centres of Excellence of CanadaLast checked upnlx_88813
NTNU Systems BiologyResource, topical portal, training resource, portal, postdoctoral program resource, data or information resourceThe new NTNU Systems Biology website showcases the different systems biology efforts at NTNU. Regular updates on new initiatives and advertisements for new PhD and Postdoc vacancies in systems biology will be posted.SCR_010713(NTNU Systems Biology, RRID:SCR_010713)Norwegian University of Science and Technology; Trondheim; Norway Last checked downnlx_88017http://www.ntnu.edu/nt/systemsbiology
Inflammatory Breast Cancer Research FoundationResource, disease-related portal, topical portal, portal, funding resource, data or information resourceThe Inflammatory Breast Cancer Research Foundation is a non-profit corporation dedicated to the support of research and public awareness. It is dedicated to researching the cause of Inflammatory Breast Cancer, also known as IBC, an advanced and accelerated form of breast cancer usually not detected by mammograms or ultrasounds. Inflammatory breast cancer requires immediate aggressive treatment with chemotherapy prior to surgery and is treated differently than more common types of breast cancer. Our mission is to assist scientists and researchers in their quest to determine the definitive causes of inflammatory breast cancer. The Inflammatory Breast Cancer Research Foundation seeks to assist them in their work so effective and meaningful detection and diagnosis, prevention and treatment can be pursued and achieved. Our Goals Include: * To ignite interest in the study and research of inflammatory breast cancer at every level. From researchers to physicians, educators and scientists, the IBC Research Foundation seeks to support and inspire those seeking to identify the cause(s) of inflammatory breast cancer. * To support research, the purpose of which is to reach an unambiguous definition of inflammatory breast cancer. The clinical/pathological definition in use since the late 1800s with little change in the 1900s is ambiguous and doesn''t result in a diagnosis of all cases of IBC. By using research methods available in the 21st Century, an unambiguous definition is now possible, assuring with high certainty that all cases of IBC will be correctly diagnosed, and possible sub-types of IBC identified, which may lead to better treatment outcomes. * To increase awareness of IBC for primary care physicians, nursing professionals, and medical technicians in order to minimize the time from presentation of symptoms to correct diagnosis of inflammatory breast cancer. * To increase public awareness in an effort to encourage women to seek medical attention for common inflammatory breast cancer symptoms soon after they appear and to empower patients, caregivers, families and friends to pursue meaningful paths in support of diagnosis and treatment of inflammatory breast cancer.SCR_004898(Inflammatory Breast Cancer Research Foundation, RRID:SCR_004898)small tax-deductible voluntary donationsLast checked upnlx_86933
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