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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

311 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
UBERONResource, ontology, data or information resource, controlled vocabularyAn integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human.anatomy, comparative, evolution, organ system, anatomical structure, body part, organ, tissue, body, vertebrate, function, phenotype, expression, model organism, oboSCR_010668(UBERON, RRID:SCR_010668)OBO ARRA, DOE, NCRR, NHGRI, NSFrelated to: Gene Ontology, used by: Monarch Initiative, Neuroscience Information Framework, listed by: BioPortalPMID:22293552Last checked upnlx_74404
Terminology for the Description of DynamicsResource, ontology, data or information resource, controlled vocabularyAn ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.owlSCR_010454(Terminology for the Description of Dynamics, RRID:SCR_010454)listed by: BioPortalLast checked upnlx_157641
PseudogeneResource, ontology, data or information resource, controlled vocabularyOntology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin.oboSCR_010453(Pseudogene, RRID:SCR_010453)listed by: BioPortalLast checked upnlx_157640
suicideontoResource, ontology, data or information resource, controlled vocabularyOntology of suicidology.owlSCR_010452(suicideonto, RRID:SCR_010452)listed by: BioPortalLast checked upnlx_157633
suicideoResource, ontology, data or information resource, controlled vocabularyOntology of suicidology.owlSCR_010451(suicideo, RRID:SCR_010451)listed by: BioPortalLast checked downnlx_157632
XEML Environment OntologyResource, ontology, data or information resource, controlled vocabularyOntology to help plant scientists in documenting and sharing metadata describing the abiotic environment.oboSCR_010450(XEML Environment Ontology, RRID:SCR_010450)listed by: BioPortalLast checked upnlx_157631
Wheat Trait OntologyResource, ontology, data or information resource, controlled vocabularyOntology that defines traits of the International Wheat Information System (IWIS) database and wheat descriptor.oboSCR_010449(Wheat Trait Ontology, RRID:SCR_010449)listed by: BioPortalLast checked upnlx_157630
Web-Service Interaction OntologyResource, ontology, data or information resource, controlled vocabularyOntology that enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general. If the interaction scenario with a Web service is nontrivial (and incorporates session handling), annotation with WSIO concepts will enable automatic generation of client programs, scripts, or interactive applications with a graphical user interface. WSIO also enables automation of different ways of data transfer and data un-/compression or en-/decoding. They strongly discourage providers from developing complex interaction and data-transfer/compression scenarios, however when needed, WSIO may enable smooth automated interaction with them. Future versions will support more interaction scenarios. WSIO aims to serve also as a means to standardise the complex interaction scenarios primarily within both SOAP and REST Web services, and secondarily to apply also to batch execution infrastructure in general.oboSCR_010448(Web-Service Interaction Ontology, RRID:SCR_010448)listed by: BioPortalLast checked upnlx_157629
WHO Adverse Reaction TerminologyResource, data or information resource, controlled vocabularyOntology of the WHO adverse reaction terminology, 1997.umlsSCR_010447(WHO Adverse Reaction Terminology, RRID:SCR_010447)World Health Organization listed by: BioPortalLast checked upnlx_157628
Vital Sign OntologyResource, ontology, data or information resource, controlled vocabularyAn extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements.owlSCR_010446(Vital Sign Ontology, RRID:SCR_010446)listed by: BioPortalLast checked upnlx_157627
Veterans Health Administration National Drug FileResource, ontology, data or information resource, controlled vocabularyOntology that includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes.umlsSCR_010445(Veterans Health Administration National Drug File, RRID:SCR_010445)listed by: BioPortalLast checked upnlx_157626
Vertebrate Homologous Organ Group OntologyResource, ontology, data or information resource, controlled vocabularyA multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and theye provide confidence codes and references when available.oboSCR_010444(Vertebrate Homologous Organ Group Ontology, RRID:SCR_010444)listed by: BioPortalLast checked upnlx_157623
Upper-Level Cancer OntologyResource, ontology, data or information resource, controlled vocabularyUpper-level ontology for cancer.oboSCR_010443(Upper-Level Cancer Ontology, RRID:SCR_010443)Cancerlisted by: BioPortalLast checked upnlx_157620
Units of Measurement OntologyResource, ontology, data or information resource, controlled vocabularyMetrical units ontology for use in conjunction with PATOoboSCR_010442(Units of Measurement Ontology, RRID:SCR_010442)listed by: BioPortalLast checked upnlx_157619
Units OntologyResource, ontology, data or information resource, controlled vocabularyA small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application.owlSCR_010441(Units Ontology, RRID:SCR_010441)listed by: BioPortalLast checked upnlx_157618
Tribolium OntologyResource, ontology, data or information resource, controlled vocabularyOntology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult.oboSCR_010440(Tribolium Ontology, RRID:SCR_010440)listed by: BioPortalLast checked upnlx_157617
Translational Medicine OntologyResource, ontology, data or information resource, controlled vocabularyA high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together. This would enable scientists to answer new questions, and to answer existing scientific questions more quickly. This will help pharmaceutical companies to model patient-centric information, which is essential for the tailoring of drugs, and for early detection of compounds that may have sub-optimal safety profiles. The ontology should link to existing publicly available domain ontologies.owlSCR_010439(Translational Medicine Ontology, RRID:SCR_010439)listed by: BioPortalLast checked upnlx_157616
Traditional Medicine Signs and Symptoms Value SetResource, ontology, data or information resource, controlled vocabularyOntology of the value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM).owlSCR_010438(Traditional Medicine Signs and Symptoms Value Set, RRID:SCR_010438)listed by: BioPortalLast checked upnlx_157615
Traditional Medicine Other Factors Value SetResource, ontology, data or information resource, controlled vocabularyOntology of the value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM).owlSCR_010437(Traditional Medicine Other Factors Value Set, RRID:SCR_010437)listed by: BioPortalLast checked upnlx_157614
Traditional Medicine Meridian Value SetsResource, ontology, data or information resource, controlled vocabularyOntology of the meridian value set used in the International Classification of Traditional Medicine.owlSCR_010436(Traditional Medicine Meridian Value Sets, RRID:SCR_010436)listed by: BioPortalLast checked upnlx_157613
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