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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 19, 2019)

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311 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Brucellosis OntologyResource, ontology, data or information resource, controlled vocabularyA biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.owlSCR_006795(Brucellosis Ontology, RRID:SCR_006795)Zoonotic disease brucellosislisted by: BioPortalLast checked downnlx_157345http://www.phidias.us/bbp/idobru/index.php
Neglected Tropical Disease OntologyResource, ontology, data or information resource, controlled vocabularyOntology that aims at representing classes and relations to a specific set of diseases which persist in exactly the physical, psychosocial and economic situation of the poorest, most marginalized populations of the developing world, the Neglected Tropical Diseases (NTD). The current focus of NTDO is related to the transmission of vector-borne diseases and how they are related to the death. NTDO is based on BioTop (main classes and relations) and GFO (Time Representation) and represented in Description Logics (DL). NTDO includes information about the proper disease, its causative agent (when available), dispositions, and the geographic location the disease happens. In addition, NTDO includes a generic attempt to identify the process which leads a person to death, due to NTDs or other diseases. NTDO was built with a rich set of axioms and the intended usage is related to Health Surveillance of NTD-related morbidity and mortality cases.owlSCR_010374(Neglected Tropical Disease Ontology, RRID:SCR_010374)Tropical disease, Vector-borne diseaselisted by: BioPortalLast checked upnlx_157502http://www.cin.ufpe.br/~ntdo
Artificial Intelligence Rheumatology Consultant System OntologyResource, ontology, data or information resource, controlled vocabularyOntology used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers.umlsSCR_010274(Artificial Intelligence Rheumatology Consultant System Ontology, RRID:SCR_010274)Rheumatologic diseaselisted by: BioPortalLast checked upnlx_157320
Dispedia Core OntologyResource, ontology, data or information resource, controlled vocabularyOntology that is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).owlSCR_010309(Dispedia Core Ontology, RRID:SCR_010309)Rare disease, Amyotrophic lateral sclerosislisted by: BioPortalLast checked upnlx_157389
Orphanet Rare Disease OntologyResource, ontology, data or information resource, controlled vocabularyOntology to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (http://www.orpha.net) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, SNOMED CT, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10). The ontology will be maintained by Orphanet and further populated with new data. Orphanet classifications can be browsed in the OLS view. The Orphanet Rare Disease Ontology is updated monthly and follows the OBO guidelines on deprecation of terms. It constitutes the official ontology of rare diseases produced and maintained by Orphanet (INSERM, US14).owlSCR_010402(Orphanet Rare Disease Ontology, RRID:SCR_010402) European Bioinformatics Institute , Orphanet Rare diseaselisted by: BioPortalLast checked upnlx_157540
Resource of Asian Primary Immunodeficiency Diseases Phenotype OntologyResource, ontology, data or information resource, controlled vocabularyA controlled vocabulary of ontology class structures and entities of observed phenotypic terms for primary immunodeficiency diseases (PIDs) that facilitate global sharing and free exchange of PID data with users'' communitiesowlSCR_006776(Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology, RRID:SCR_006776)Primary Immunodeficiency Diseaselisted by: BioPortalLast checked upnlx_157576
Neomark Oral Cancer Ontology version 3Resource, ontology, data or information resource, controlled vocabularyOntology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.owlSCR_010375(Neomark Oral Cancer Ontology version 3, RRID:SCR_010375)Oral cancerlisted by: BioPortalLast checked upnlx_157503
Neomark Oral Cancer Ontology version 4Resource, ontology, data or information resource, controlled vocabularyOntology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.owlSCR_010376(Neomark Oral Cancer Ontology version 4, RRID:SCR_010376)Oral cancerlisted by: BioPortalLast checked upnlx_157504
Cell Line Ontology by MahadevanResource, ontology, data or information resource, controlled vocabularyA comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.owl, cell lineSCR_010281(Cell Line Ontology by Mahadevan, RRID:SCR_010281)Normal, Pathologiclisted by: BioPortalLast checked upnlx_157356
Ontology for Newborn Screening Follow-up and Translational ResearchResource, ontology, data or information resource, controlled vocabularyApplication ontology covering the domain of newborn screening, follow-up and translational research pertaining to patients diagnosed with inheritable and congenital diseases mainly identified through newborn dried blood spot screening. ONSTR is a central component of the project Newborn Screening Follow-up Data Integration Collaborative (NBSDC), https://nbsdc.org. ONSTR uses the Basic Formal Ontology v2 (BFO2, v2012-07-20) as top-level ontology and extends the classes imported from OBO Foundry ontologies and candidate ontologies.owl, newbornSCR_010389(Ontology for Newborn Screening Follow-up and Translational Research, RRID:SCR_010389)Inheritable disease, Congenital diseaselisted by: BioPortalLast checked upnlx_157520
Pathogenic Disease OntologyResource, ontology, data or information resource, controlled vocabularyAn ontology for describing both human infectious disease caused by bacteria and the disease that is related to bacterial infection.owlSCR_010405(Pathogenic Disease Ontology, RRID:SCR_010405)Infectious disease, (caused by bacteria), Bacterial infection related diseaselisted by: BioPortalLast checked upnlx_157543
Infectious Disease OntologyResource, ontology, data or information resource, controlled vocabularyOntologies designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general Infectious Disease Ontology (IDO-Core) of entities relevant to both biomedical and clinical aspects of most infectious diseases. Sub-domain specific extensions of IDO-Core complete the set providing ontology coverage of entities relevant to specific pathogens or diseases. Please note: The ontology metrics displayed by BioPortal do not distinguish IDO-developed terms from terms imported from other ontologies.owlSCR_010345(Infectious Disease Ontology, RRID:SCR_010345)Infectious diseaselisted by: BioPortalLast checked upnlx_157439
HIV ontologyResource, ontology, data or information resource, controlled vocabularyOntology that encompasses all knowledge about HIVoboSCR_000908(HIV ontology, RRID:SCR_000908)HIVlisted by: BioPortalLast checked downnlx_157422
Bleeding History Phenotype OntologyResource, ontology, data or information resource, controlled vocabularyAn application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.owlSCR_001165(Bleeding History Phenotype Ontology, RRID:SCR_001165)Hemorrhagic disorderlisted by: BioPortalLast checked upnlx_157338
Ontology of Glucose Metabolism DisorderResource, ontology, data or information resource, controlled vocabularyOntology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)obo, owlSCR_010399(Ontology of Glucose Metabolism Disorder, RRID:SCR_010399)Glucose Metabolism Disorderlisted by: BioPortalLast checked upnlx_157531
Fanconi Anemia OntologyResource, ontology, data or information resource, controlled vocabularyAn application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate.owlSCR_010319(Fanconi Anemia Ontology, RRID:SCR_010319)Fanconi Anemialisted by: BioPortalLast checked upnlx_157403http://lab.rockefeller.edu/smogorzewska/ifar/
Ontology of Geographical RegionResource, ontology, data or information resource, controlled vocabularyOntology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS.owlSCR_010398(Ontology of Geographical Region, RRID:SCR_010398)Diabeteslisted by: BioPortalLast checked upnlx_157530
Human Dermatological Disease OntologyResource, ontology, data or information resource, controlled vocabularyOntology of human dermatologic diseaseoboSCR_007648(Human Dermatological Disease Ontology, RRID:SCR_007648)Dermatologic diseaselisted by: BioPortalLast checked upnlx_157428
Dengue Fever OntologyResource, ontology, data or information resource, controlled vocabularyAn ontology for dengue fever.owlSCR_010304(Dengue Fever Ontology, RRID:SCR_010304)Dengue feverlisted by: BioPortalLast checked upnlx_157383http://code.google.com/p/dengue-fever-ontology/
Ontological Knowledge Base Model for Cystic FibrosisResource, ontology, data or information resource, controlled vocabularyAn ontological knowledge base model for cystic fibrosis. There are molecular genetic information (i.e. gene mutations) and health information included in OntoKBCF. The purposes of OntoKBCF include management of molecular genetic information and health information and embedding OntoKBCF into EHR settings.owlSCR_010382(Ontological Knowledge Base Model for Cystic Fibrosis, RRID:SCR_010382)Cystic fibrosislisted by: BioPortalLast checked upnlx_157513
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