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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Sep 14, 2019)

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311 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Brucellosis OntologyResource, ontology, data or information resource, controlled vocabularyA biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.owlSCR_006795(Brucellosis Ontology, RRID:SCR_006795)Zoonotic disease brucellosislisted by: BioPortalLast checked downnlx_157345http://www.phidias.us/bbp/idobru/index.php
Health Indicator OntologyResource, ontology, data or information resource, controlled vocabularyOntology for standardized health outcome and health determinant indicators as maintained by the CDC National Center for Health Statistics.owlSCR_010335(Health Indicator Ontology, RRID:SCR_010335)listed by: BioPortalLast checked downnlx_157424
HIV ontologyResource, ontology, data or information resource, controlled vocabularyOntology that encompasses all knowledge about HIVoboSCR_000908(HIV ontology, RRID:SCR_000908)HIVlisted by: BioPortalLast checked downnlx_157422
Nursing Interventions ClassificationResource, ontology, data or information resource, controlled vocabularyOntology of nursing interventions classification.umlsSCR_000911(Nursing Interventions Classification, RRID:SCR_000911)listed by: BioPortalLast checked downnlx_157512
Medical Diagnostic Categories - Diagnosis Related GroupsResource, ontology, data or information resource, controlled vocabularyOntology of Medical Diagnostic Categories-Diagnosis Related GroupsowlSCR_003725(Medical Diagnostic Categories - Diagnosis Related Groups, RRID:SCR_003725)listed by: BioPortalLast checked downnlx_157470
Bioassay OntologyResource, ontology, data or information resource, controlled vocabularyOntology to describe and categorize chemical biology and drug screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation.chemical biology, drug screening, assay, perturbation, high-throughput screening, owlSCR_002638(Bioassay Ontology, RRID:SCR_002638)used by: LINCS Information Framework, listed by: BioPortalLast checked downnlx_156065
Systematized Nomenclature of Medicine - Clinical TermsResource, ontology, data or information resource, controlled vocabularyOntology of SNOMED (Systematized Nomenclature of Medicine) clinical terms.umlsSCR_003915(Systematized Nomenclature of Medicine - Clinical Terms, RRID:SCR_003915)listed by: BioPortalLast checked downnlx_157603
Mosquito Gross Anatomy OntologyResource, ontology, data or information resource, controlled vocabularyA structured controlled vocabulary of the anatomy of mosquitoes.oboSCR_003839(Mosquito Gross Anatomy Ontology, RRID:SCR_003839)listed by: BioPortalLast checked downnlx_157485
Biochemical Substructure OntologyResource, ontology, data or information resource, controlled vocabularyBiochemical Substructure OntologyprotegeSCR_010185(Biochemical Substructure Ontology, RRID:SCR_010185)listed by: BioPortalLast checked downnlx_157330
BFOResource, ontology, data or information resource, controlled vocabularyA small, upper level ontology that is designed for use in supporting information retrieval, analysis and integration in scientific and other domains. BFO is a genuine upper integration in scientific and other domains. Thus it does not contain physical, chemical, biological or other terms which would properly fall within the coverage domains of the special sciences.owl, gold standardSCR_004818(BFO, RRID:SCR_004818)IFOMIS Volkswagen Foundationused by: Beta Cell Genomics Ontology, listed by: BioPortalLast checked downnlx_80606http://bioportal.bioontology.org/ontologies/BFO
PATOResource, ontology, data or information resource, controlled vocabularyOntology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation. The new PATO differs from the old in that the system of attributes and values has been abandoned in favor of a single hierarchy of qualities. PATO is designed to be used in conjunction with ontologies of quality-bearing entities. An example of such an entity is an insect eye (taken from the fly_anatomy ontology), which could be the bearer of the quality ''red'' (PATO:0000322). This combination is the red eye phenotype. We say that the phenotype term is ''post-coordinated'', as it is formed by coordinating two terms together. This is in contrast to ontologies of pre-coordinated phenotypes, such as the Mammalian Phenotype (MP) ontology. PATO is independent of any exchange format or database schema. One way of expressing phenotype annotation using PATO is pheno-syntax, or pheno-xml. They will also post recommendations for representing phenotypes using OWL. All representations share the same basic formal underpinnings, a combination of quality-bearing entity and a quality (the EQ model).plant trait, mammalian, phenotype, obo, quality, phenotypic qualitySCR_004782(PATO, RRID:SCR_004782)OBO used by: Morpholino Database, listed by: BioPortalLast checked downnlx_77534http://obofoundry.org/wiki/index.php/PATO:Main_Page
PhenomeBLAST OntologyResource, ontology, data or information resource, controlled vocabularyA cross-species phenotype and anatomy ontology resulting from combining available anatomy and phenotype ontologies and their definitions. The ontology includes phenotype definitions for yeast, mouse, fish, worm, fly and human phenotypes and diseases.owlSCR_005139(PhenomeBLAST Ontology, RRID:SCR_005139)listed by: BioPortalLast checked downnlx_157549
African Traditional Medicine OntologyResource, ontology, data or information resource, controlled vocabularyOntology that describes the actors'' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom''s roles and the disease consideration.oboSCR_010288(African Traditional Medicine Ontology, RRID:SCR_010288)listed by: BioPortalLast checked downnlx_157313
Amphibian Gross Anatomy OntologyResource, ontology, data or information resource, controlled vocabularyA structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.oboSCR_010291(Amphibian Gross Anatomy Ontology, RRID:SCR_010291)listed by: BioPortalLast checked downnlx_157316
Gene Expression OntologyResource, ontology, data or information resource, controlled vocabularyAn application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.oboSCR_010326(Gene Expression Ontology, RRID:SCR_010326)listed by: BioPortalLast checked downnlx_157413
Regulation of Gene Expression OntolologyResource, ontology, data or information resource, controlled vocabularyAn application ontology for the domain of gene expression regulation. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.oboSCR_006124(Regulation of Gene Expression Ontolology, RRID:SCR_006124)listed by: BioPortalLast checked downnlx_157572
Regulation of Transcription OntologyResource, ontology, data or information resource, controlled vocabularyAn application ontology for the domain of gene transcription regulation. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.oboSCR_006238(Regulation of Transcription Ontology, RRID:SCR_006238)listed by: BioPortalLast checked downnlx_157573
suicideoResource, ontology, data or information resource, controlled vocabularyOntology of suicidology.owlSCR_010451(suicideo, RRID:SCR_010451)listed by: BioPortalLast checked downnlx_157632
C. elegans Development VocabularyResource, ontology, data or information resource, controlled vocabularyA structured controlled vocabulary of the development of Caenorhabditis elegans.oboSCR_006811(C. elegans Development Vocabulary, RRID:SCR_006811)WormBase listed by: BioPortalLast checked downnlx_157346
Physician Data QueryResource, ontology, database, people resource, registry, controlled vocabulary, clinical trial, data or information resourceNCI''s comprehensive cancer database that contains summaries on a wide range of cancer topics; a registry of 8,000+ open and 19,000+ closed cancer clinical trials from around the world; a directory of professionals who provide genetics services; the NCI Dictionary of Cancer Terms, with definitions for 6,800+ cancer and medical terms; and the NCI Drug Dictionary, which has information on 2,300+ agents used in the treatment of cancer or cancer-related conditions. The PDQ cancer information summaries are peer reviewed and updated monthly by six editorial boards comprised of specialists in adult treatment, pediatric treatment, supportive care, screening and prevention, genetics, and complementary and alternative medicine. The Boards review current literature from more than 70 biomedical journals, evaluate its relevance, and synthesize it into clear summaries. Many of the summaries are also available in Spanish.adult, pediatric, child, alternative, breast, clinical trial, colorectal, hypercalcemia, legal, lung, medicine, medullary, nausea, ovarian, pain, pathophysiology, pediatric, pharmaceutical, physician, prevention, prognosis, prostate, psychosocial, query, risk factor, screening, social, syndrome, thyroid, treatment, umls, genetics, medical, drug, peer reviewSCR_006833(Physician Data Query, RRID:SCR_006833)National Cancer Institute Cancer, Cancer-related conditionNCIlisted by: BioPortalLast checked downnif-0000-21318
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