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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Sep 14, 2019)

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Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Cooperative Human Tissue NetworkResource, biomaterial supply resource, material resource, tissue bankThe Cancer Diagnosis Program of the National Cancer Institute (NCI) initiated the Cooperative Human Tissue Network (CHTN) in 1987 to provide increased access to human tissue for basic and applied scientists from academia and industry to accelerate the advancement of discoveries in cancer diagnosis and treatment. This unique resource provides remnant human tissues and fluids from routine procedures to investigators who utilize human biospecimens in their research. Unlike tissue banks, the CHTN works prospectively with each investigator to tailor specimen acquisition and processing to meet their specific project requirements. Because the CHTN is funded by the NCI, the CHTN is able to maintain nominal processing fees for its services. The CHTN is comprised of five adult divisions and one pediatric division. Each of the adult divisions coordinates investigator applications/requests based upon the investigator's geographic location within North America. The Pediatric Division manages all investigators who request pediatric specimens only. The CHTN divisions share coordination for requests from outside North America. The CHTN divisions work both independently with individual investigators and together as a seamless unit to fulfill requests that are difficult to serve by any single division. The CHTN's unique informatics system allows each division to effectively communicate and network the needs of its investigators to all CHTN divisions. The Network as a whole can then help fulfill an investigator's request. Biospecimens from surgeries, autopsies and other routine procedures: Malignant, Benign, Diseased, Normal, Biofluids (urine, serum, plasma, buffy coat) High quality specimens at LOW processing fees: Fresh, Frozen, Floating in fixative, RNAlater, Paraffin embedded or and/or unstained slidesbiomaterial supply resource, human tissue, network, cancer, NCISCR_004446(Cooperative Human Tissue Network, RRID:SCR_004446)NCIrelated to: UAB SPORE Biorepository Banks, University of Alabama, Alabama, USA, University of Pennsylvania, Philadelphia, Pennsylvania, University of Virginia, Virginia, USA, Ohio State University College of Medicine, Ohio, USA, Vanderbilt University, Tennessee, USA, listed by: One Mind Biospecimen Bank ListingLast checked downnlx_44126http://www.chtn.nci.nih.gov/
Clinical and Translational Science Awards ConsortiumResource, knowledge environmentNational consortium of medical research institutions working together to transform the local, regional, and national environment to increase the efficiency and speed of clinical and translational research across the country. Consortium members share a common vision to reduce the time it takes for laboratory discoveries to become treatments for patients, to engage communities in clinical research efforts and to train clinical and translational researchers. This consortium includes 60 medical research institutions located throughout the nation, linking them together to energize the discipline of clinical and translational science. The CTSA consortium has five Strategic Goals: * National Clinical and Translational Research Capability * The Training and Career Development of Clinical and Translational Scientists * Consortium-Wide Collaborations * The Health of our Communities and the Nation * T1 Translational Researchbiomedical, clinical, community, consortium, institution, laboratory, medical, patient, research, researcher, science, translational, translational research, treatmentSCR_008339(Clinical and Translational Science Awards Consortium, RRID:SCR_008339) U.S. Department of Health and Human Services , Vanderbilt University; Tennessee; USA National Center for Advancing Translational Sciencesrelated to: REDCap, eBIRT, VIVO, CTSA ShareCenter, CUSP, CDART, cTAKES, CTSA-IP, FURTHeR, HUBzero, ePRISM, ResearchMatch, SPARC, Albert Einstein College of Medicine, New York, USA, Clinical Research Resource HUB, Eagle I, CTSAconnect, Boston University, Massachusetts, USA, Case Western Reserve University, Ohio, USA, Columbia University, New York, USA, Duke University, North Carolina, USA, Emory University, Georgia, USA, Morehouse School of Medicine, Georgia, USA, Georgia Institute of Technology, Georgia, USA, Georgetown University, Washington D.C., USA, Howard University, Washington D.C., Indiana University School of Medicine, Indiana, USA, Johns Hopkins University, Maryland, USA, Mayo Clinic, Medical College of Wisconsin, Wisconsin, USA, Medical University of South Carolina, South Carolina, USA, Icahn School of Medicine at Mount Sinai, New York, USA, New York University School of Medicine, New York, USA, Northwestern University, Illinois, USA, Oregon Health and Science University, Oregon, USA, Penn State Milton S. Hershey Medical Center, Pennsylvania, USA, Stanford University, Stanford, California, Ohio State University, Ohio, USA, Rockefeller University, New York, USA, The Scripps Research Institute, University of Alabama at Birmingham, Alabama, USA, University of North Carolina at Chapel Hill, North Carolina, USA, University of Texas Health Science Center at San Antonio, Texas, USA, University of Utah, Utah, USA, Tufts University, Massachusetts, USA, University of Arkansas for Medical Sciences, Arkansas, USA, University of California at Los Angeles, California, USA, University of California at Davis, California, USA, University of California at Irvine, California, USA, University of California at San Diego, California, USA, University of California at San Francisco, California, USA, University of Chicago, Illinois, USA, University of Cincinnati, Ohio, USA, University of Colorado Denver, Colorado, USA, University of Florida, Florida, USA, University of Illinois at Chicago, Illinois, USA, University of Iowa, Iowa, USA, University of Kansas Medical Center, Kansas, USA, University of Massachusetts Medical School, Massachusetts, USA, University of Miami, Florida, USA, University of Michigan, Michigan, USA, University of Minnesota Twin Cities, Minnesota, USA, University of New Mexico, New Mexico, USA, University of Pennsylvania, Philadelphia, Pennsylvania, University of Pittsburgh, Pennsylvania, USA, University of Rochester School of Medicine and Dentistry, New York, USA, University of Southern California, Los Angeles, USA, University of Texas Health Science Center at Houston, Texas, USA, University of Texas Medical Branch at Galveston, University of Texas Southwestern Medical Center, Texas, USA, University of Washington, Seattle, USA, University of Wisconsin-Madison, Wisconsin, USA, Vanderbilt University, Tennessee, USA, Meharry Medical College, Virginia Commonwealth University, Virginia, USA, Washington University in St. Louis, Missouri, USA, Weill Cornell Medical College, New York, USA, Hunter College, New York, USA, Yale University, Connecticut, USALast checked downnif-0000-24968http://www.ctsaweb.org/
University of California Los Angeles GenoSeq Core FacilityResource, this resource is no longer in service, core facility, nif annotation standard, narrative resource, service resource, standard specification, access service resource, availability annotation standard, data or information resourceCore is involved in a broad range of scientific research. Medical research performed at the GenoSeq Core includes studies of human neurological disorders, such as: autism, bipolar disorder, and epilepsy; cancers of breast, colon, lung, and prostate; cardiac disease; and digestive disorders. Core also carries out studies of the genetics of non-human organisms. The GenoSeq Core is closely linked to the UCLA Bioinformatics Core in Gonda Center, which provides the computing power and sophisticated software needed to analyze and interpret the unprecedented volume of genetic data being generated with modern laboratory automation. THIS RESOURCE IS NO LONGER IN SERVCE, documented January 24, 2019.genotyping, sequencingSCR_012411(University of California Los Angeles GenoSeq Core Facility, RRID:SCR_012411)University of California at Los Angeles; California; USA related to: University of California Los Angeles Labs and Facilities, David Geffen School of Medicine at UCLA, California, USA, listed by: Science ExchangeLast checked downSciEx_13104
New York University Genome Technology CenterResource, service resource, core facility, access service resourceThe mission of GTC is to enable and foster institutional science by providing expertise in genomics, resources, and the training necessary to promote basic and clinical research through dedicated collaborative effort. GTC assists with the presentation and publication of investigator data.Oxford Nanopore sequencing, Illumina, sequencingSCR_012514(New York University Genome Technology Center, RRID:SCR_012514)New York University; New York; USA related to: New York University Labs and Facilities, New York University School of Medicine, New York, USA, listed by: Science ExchangeLast checked downSciEx_41https://med.nyu.edu/research/scientific-cores-shared-resources/genome-technology-center
Collaboratory of AIDS Researchers for Eradciation (CARE)Resource, organization portal, portal, consortium, data or information resourceThe Collaboratory of AIDS Researchers for Eradication (CARE) is a consortium of scientific experts in the field of HIV latency from several U.S. and European academic research institutions as well as Merck Research Laboratories working together to find a cure for HIV.AIDS, HIV, drug development, data-sharing enablerSCR_013681(Collaboratory of AIDS Researchers for Eradciation (CARE), RRID:SCR_013681)NIAID, NIMHrelated to: University of North Carolina at Chapel Hill School of Medicine, North Carolina, USA, Gladstone Institute of Neurological Disease, UCSF School of Medicine, California, USA, Case Western Reserve University, Ohio, USA, Merck, UC Davis School of Medicine, California, USA, University of California at San Diego, California, USA, University of Utah School of Medicine, Utah, USA, University of Minnesota Twin Cities, Minnesota, USALast checked down
Biospecimen Repository and Processing CoreResource, information resourceA biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.repository, biomaterial supply resource, shared resource, Duke University, biospecimen, tissue, tissue processing, informed consent, biobankSCR_013792(Biospecimen Repository and Processing Core, RRID:SCR_013792)Duke University; North Carolina; USA related to: Duke Cancer Institute, Duke Biobank, Duke University School of Medicine, North Carolina, USALast checked downhttp://www.dukecancerinstitute.org/research/shared-resources/Biospecimen%20Repository%20and%20Processing%20Core
PiirusResource, software resource, collaboration tool, database, data or information resourceA database and collaboration tool which allows researchers to make contacts or find collaborators within their field or from a different discipline. Users can create a profile detailing their collaboration interests, research areas, and methodologies as well as add links to external sites such as LinkedIn and Academia.edu. Piirus takes the information from users' profiles to suggest researchers with whom they may be interested in collaborating with. Users can also search for users with particular interests, expertise, or techniques.collaboration tool, connect, networkingSCR_013964(Piirus, RRID:SCR_013964)University of Warwick; Coventry; United Kingdom related to: Connected Researchers, Boston University, Massachusetts, USA, listed by: Connected ResearchersLast checked down
GitLabResource, software resource, software application, data management softwareA software application which provides Git repository management with fine grained access controls, code reviews, issue tracking, activity feeds, wikis, and continuous integration. Four different versions are available, each with different packaging pricing: Community edition, Enterprise edition, Continuous integration, and GitLab.com.software application, Git repository management, Git repository, data managementSCR_013983(GitLab, RRID:SCR_013983)related to: Connected Researchers, used by: University of California at Los Angeles, California, USA, listed by: Connected ResearchersLast checked downhttps://about.gitlab.com/gitlab-com/
Ascidian Stock Center (ASC)Resource, biomaterial supply resource, material resource, organism supplierSupplier of Ciona (C. robusta and C. savignyi) adults and stable transgenic animals expressing tissue-specific fluorescent proteins for research laboratories. This ascidian culturing facility is located at the marine laboratory of the University of California at Santa Barbara (UCSB).ascidian, model organism, ciona, embryology, marine organism, culturing facilitySCR_014949(Ascidian Stock Center (ASC), RRID:SCR_014949)NIGMShosted by: University of California at Santa Barbara, California, USALast checked down
Prevention of Lower Urinary Tract SymptomsResource, organization portal, portal, consortium, data or information resourceResearch consortium from many different fields to plan, perform and analyze the studies that are needed to help researchers conduct future prevention and intervention for Lower Urinary Tract Symptoms (LUTS) in women.plan, perform, analyze, data, prevent, lower, urinary, track, symptom, womenSCR_016923(Prevention of Lower Urinary Tract Symptoms, RRID:SCR_016923)NIDDKrelated to: University of Minnesota Medical School, Minnesota, USA, listed by: NIDDK Information Network, submitted by: NIDDK Information NetworkLast checked down
TRANSITResource, software resource, software application, data analysis software, data processing softwareSoftware tool Python based and open source for statistical analysis of TnSeq data. Provides a graphical interface to three different statistical methods for analyzing TnSeq data capable of identifying essential genes in individual datasets as well as comparative analysis between conditions.statistical, analysis, TnSeq, data, identify, gene, datasetSCR_016492(TRANSIT, RRID:SCR_016492)related to: Texas A and M University, Texas, USAPMID:26447887Last checked downhttps://github.com/mad-lab/transit
National High Magnetic Field Lab DC Field Core FacilityResource, service resource, core facility, access service resourceFacility located at MagLab headquarters near Florida State University in Tallahassee. Contains 14 resistive magnet cells connected to 56 megawatt DC power supply and 15,000 square feet of cooling equipment to remove heat generated by magnets. Includes several superconducting magnets operating at millikelvin temperatures. Among these instruments is 45-tesla hybrid magnet, which offers scientists strongest continuous magnetic field in world. Research is supported by magnet plant and cryogenic system operators. Technicians design, build and repair instruments for user research.Magnet, NHMFL, magnetic, field, plant, cryogenicSCR_017358(National High Magnetic Field Lab DC Field Core Facility, RRID:SCR_017358)Department of Defense, Department of Energy, Florida State, NIH, NSFrelated to: Florida State University, Florida, USALast checked up
Marine Biological LaboratoryResource, organization portal, training resource, biomaterial supply resource, journal article, postdoctoral program resource, narrative resource, portal, meeting resource, material resource, funding resource, data or information resourcePrivate non-profit laboratory at the University of Chicago that works on scientific discovery of biodiversity, understanding the environment and exploring the human condition through education and research.marine sciences, chicago, marine biology research, environmental scienceSCR_002410(Marine Biological Laboratory, RRID:SCR_002410)listed by: One Mind Biospecimen Bank Listing, affiliated with: University of Chicago, Illinois, USA, Woods Hole Oceanographic Institution, Massachusetts, USALast checked upnif-0000-00389
ShareLaTeXResource, software resource, software application, authoring toolAn collaborative tool which allows users to edit LaTeX documents in their browser. Multiple users can simultaneously access and edit the same LaTeX document and see the changes in real time. The latest version is available online, and the built in chat helps communicate with others while editing.collaboration tool, authoring, LaTexSCR_002652(ShareLaTeX, RRID:SCR_002652)related to: FORCE11, University of Toronto, Ontario, Canada, Stanford University, Stanford, California, Harvard University, Cambridge, United States, University of Tokyo, Tokyo, Japan, University of Liverpool, Liverpool, United Kingdom, University of Cambridge, Cambridge, United Kingdom, Imperial College London, London, United Kingdom, Yale University, Connecticut, USA, University of Oxford, Oxford, United Kingdom, Massachusetts Institute of Technology, Massachusetts, USA, used by: University of Toronto, Ontario, Canada, Stanford University, Stanford, California, Harvard University, Cambridge, United States, University of Tokyo, Tokyo, Japan, University of Liverpool, Liverpool, United Kingdom, University of Cambridge, Cambridge, United Kingdom, Imperial College London, London, United Kingdom, Yale University, Connecticut, USA, University of Oxford, Oxford, United Kingdom, Massachusetts Institute of Technology, Massachusetts, USA, listed by: FORCE11Last checked upnlx_156080
Charles Stark Draper LaboratoryResource, organization portal, portal, data or information resourceA not-for-profit research and development laboratory focused on the design, development, and deployment of advanced technological solutions for the nation's most challenging and important problems in security, space exploration, healthcare, and energy. Their expertise includes the areas of guidance, navigation, and control systems; fault-tolerant computing; advanced algorithms and software solutions; modeling and simulation; and MEMS and multichip module technology. With a strong commitment to delivering working solutions to their sponsors, they apply their expertise to a variety of domains, including autonomous air, land, sea, and space systems; information integration; distributed sensors and networks; precision-guided munitions; and biomedical engineering; chemical/biological defense; and energy system modeling and management. When appropriate for the needs of their sponsors, they will work with commercial partners to transition their technology to commercial production.engineering, technology, research, defense, space, biomedical, energy, serviceSCR_003736(Charles Stark Draper Laboratory, RRID:SCR_003736)related to: Massachusetts Institute of Technology, Massachusetts, USALast checked upnlx_157942
Nathan S. Kline Institute for Psychiatric Research; New York; USAResource, institutionSCR_004334(Nathan S. Kline Institute for Psychiatric Research; New York; USA, RRID:SCR_004334)related to: New York University, New York, USALast checked upnlx_151961
University of Rochester; New York; USAOrganization, university, institutionPrivate research university in Rochester, New York. University grants undergraduate and graduate degrees, including doctoral and professional degrees.SCR_003821(University of Rochester; New York; USA, RRID:SCR_003821)related to: University of Rochester School of Medicine and Dentistry, New York, USALast checked upnlx_81263
EnCor Biotechnology Inc.Organization, commercial organization, antibody supplier, production service resource, analysis service resource, service resource, reagent supplier, material resourceA company committed to the development, characterization and manufacture of antibody and ELISA type assays for academic, biopharmaceutical and clinical research.development, characterization, manufacture, antibody, ELISA, assay, reagent, academic, biopharmaceutical, clinical, research, serviceSCR_003951(EnCor Biotechnology Inc., RRID:SCR_003951)related to: University of Florida, Florida, USALast checked upnlx_152355
LINCS Information FrameworkResource, data or information resource, databaseDatabase for Library of Integrated Network-Based Cellular Signatures (LINCS) data that leverages semantic-web technologies and domain level ontologies. The NIH LINCS program aims to generate an extensive reference set of cellular response signatures to a variety of small molecule and genetic perturbations. The goal is to create a sustainable and widely accessible knowledge resource to advance understanding of the highly orchestrated interplay of molecular biological components in maintaining healthy development and how their perturbation causes disease. The data sets produced at LINCS span a variety of assay formats and technologies, including biochemical and single cell phenotypic responses, and genome-wide transcriptional profiling. This knowledge-based, extensible information system of interconnected components is designed to help scientists to use data and results produced in the LINCS and other NIH screening programs in their own research and to support their translation towards the development of novel therapeutics.bioassay, cell, small molecule, kinase protein, compound, cell, gene, metadata standard, cell line, primary cell, rnai reagent, rnai, reagent, protein reagent, protein, antibody reagent, antibody, perturbagen, growth factor, ligand, linked data, organ, disease, data setSCR_003937(LINCS Information Framework, RRID:SCR_003937)University of Miami; Florida; USA NHGRI, NHLBIrelated to: Broad Institute, Harvard Medical School, Massachusetts, USA, Columbia University, New York, USA, Yale University, Connecticut, USA, Arizona State University, Arizona, USA, uses: HMS LINCS Database, Bioassay Ontology, Molecular Libraries ProgramLast checked upnlx_158348http://life.ccs.miami.edu/life/
International AMD Genetics ConsortiumResource, organization portal, portal, consortium, data or information resourceConsortium aiming to identify the remaining genetic risk variants for Age-related Macular Degeneration (AMD). To increase the statistical power needed to identify genes that have small, yet significant contributions to AMD, the consortium is conducting a meta-analysis on 15 Genome Wide Association Studies (GWAS) pooled from consortium members representing over 8,000 patients with advanced AMD (dry type, neovascular, or both) and 50,000 controls. In addition to verifying known genes, the consortium identified 19 new gene variants. The genes identified in these studies function in the immune system, cholesterol transport and metabolism, and formation and maintenance of connective tissue. This study provides a nearly complete picture of genetic heritability for AMD.genetic variant, genome-wide association study, gene, risk factor, genetics, visual system, eye, late adult human, basic science, biomarkerSCR_004009(International AMD Genetics Consortium, RRID:SCR_004009)Case Western Reserve University; Ohio; USA , National Eye Institute (NEI) Commons NEIrelated to: National Eye Institute (NEI) Commons, Boston University, Massachusetts, USA, University of Regensburg, Bavaria, Germany, Vanderbilt University, Tennessee, USA, Case Western Reserve University, Ohio, USA, University of Pittsburgh, Pennsylvania, USA, Harvard Medical School, Massachusetts, USA, University of Edinburgh, Scotland, United Kingdom, Queen's University Belfast, Ireland, United Kingdom, Columbia University, New York, USA, Johns Hopkins University, Maryland, USA, University of Cambridge, Cambridge, United Kingdom, University of Southampton, Southampton, United Kingdom, University College London, London, United Kingdom, University of Athens, Athens, Greece, University of Thessaly, Thessaly, Greece, University of Sydney, Sydney, Australia, University of Melbourne, Victoria, Australia, Flinders University, Adelaide, Australia, Lions Eye Institute for Transplant and Research, University of Western Australia, Perth, Australia, National Institute of Health and Medical Research, Rennes, France, Centre dEtude du Polymorphisme Humain, University of Pennsylvania, Philadelphia, Pennsylvania, University of Miami, Florida, USA, Texas Biomedical Research Institute, Texas, USA, University of Utah, Utah, USA, University of California at San Diego, California, USA, University of California at Los Angeles, California, USA, Oregon Health and Science University, Oregon, USA, University of Michigan, Michigan, USALast checked upnlx_158429
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