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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 5, 2019)

Physical Resource or Software Tool Software

3 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
PDBj - Protein Data Bank JapanResource, service resource, data or information resource, data repository, storage service resource, databasePDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU.protein, macromolecule, structure, sequence, ligand, binding site, nmr, molecule, gold standardSCR_008912(PDBj - Protein Data Bank Japan, RRID:SCR_008912)Osaka University; Osaka; Japan Japan Science and Technology Agency, NBDC - National Bioscience Database Centerrelated to: Research Collaboratory for Structural Bioinformatics Protein Data Bank, Worldwide Protein Data Bank , PDBe - Protein Data Bank in Europe, Biological Magnetic Resonance Data Bank, RCSB PDB, Research Collaboratory for Structural Bioinformatics Protein Data BankLast checked upnlx_151484
Research Collaboratory for Structural Bioinformatics Protein Data BankResource, service resource, data or information resource, databaseCollection of structural data of biological macromolecules. Database of information about 3D structures of large biological molecules, including proteins and nucleic acids. Users can perform queries on data and analyze and visualize results.3-dimensional, annotation, molecule, nucleic acid, protein, visualization, sequence, function, macromolecule, ligand, model, dna, x-ray crystallography, ribosome, structure, oncogene, nucleic acids, molecular structure, cryomicroscopy, gold standardSCR_012820(Research Collaboratory for Structural Bioinformatics Protein Data Bank, RRID:SCR_012820) Rutgers University; New Jersey; USA , University of California at San Diego; California; USA DOE, NIH, NSFrelated to: pdb-data, PDB2MultiGif, GlyProt, pdb-care, pdb2linucs, GlyVicinity, GlyTorsion, GlySeq, AffinDB, StatAlign, Community Structure-Activity Resource, Binding MOAD, ConSurf Database, glycosciences.de, DOMINE: Database of Protein Interactions, Jenalib: Jena Library of Biological Macromolecules, SynSysNet, EMDataBank.org: Unified Data Resource for Cryo Electron Microscopy, PDBe - Protein Data Bank in Europe, TFinDIT, HOLLOW, ccPDB - Compilation and Creation of datasets from PDB, DOMMINO - Database Of MacroMolecular INteractiOns, InterEvol database, Polbase, PoSSuM, ProtChemSI, RNA CoSSMos, PDBsum, Worldwide Protein Data Bank , canSAR, CAPS Database, Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING, Combinatorial Extension (CE), Metalloprotein Site Database, PDBj - Protein Data Bank Japan, Statistical Torsional Angles Potentials of NMR Refinement Database, Metalloprotein Ligand Interaction Database, CARP, PDBTM, RNA FRABASE - RNA FRAgments search engine and dataBASE, AmiGO, ConsensusPathDB, Biological Magnetic Resonance Data Bank, DDBJ - DNA Data Bank of Japan, FlyMine, NCBI Protein, NCBI Nucleotide, FunTree, IndelFR - Indel Flanking Region Database, NMR Restraints Grid, Enzyme Structures Database, Electron Microscopy Data Bank at PDBe, Worldwide Protein Data Bank , DDBJ - DNA Data Bank of Japan, PDBe - Protein Data Bank in Europe, MINAS - Metal Ions in Nucleic AcidS, RCSB PDB, PDBj - Protein Data Bank Japan, used by: SGC, Ligand Expo , DARC - Database for Aligned Ribosomal Complexes, FireDB, Protein Data Bank Bind Database, Protein Data Bank Site, NIF Data Federation, ChannelPedia, MobiDB, Protein Database, listed by: re3data.org, affiliated with: EMDataBank.org: Unified Data Resource for Cryo Electron Microscopy, ConSurf-DB, works_with: CellPhoneDBPMID:12037327Last checked upnif-0000-00135, SCR_017379http://www.rcsb.org, http://www.pdb.org
PDBe - Protein Data Bank in EuropeResource, service resource, data or information resource, data repository, storage service resource, databaseThe European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules.x-ray, nmr, cryo-em, hybrid method, dna, protein, rna, sugar, ligand, virus, compound, fold, enzyme, 3d spatial image, structure, macromolecule, protein-protein interaction, gold standardSCR_004312(PDBe - Protein Data Bank in Europe, RRID:SCR_004312)European Bioinformatics Institute BBSRC, CCP4, European Molecular Biology Laboratory; Heidelberg; Germany, European Union, MRC, NIH, Wellcome Trustrelated to: Research Collaboratory for Structural Bioinformatics Protein Data Bank, DDBJ - DNA Data Bank of Japan, EMDataBank.org: Unified Data Resource for Cryo Electron Microscopy, Worldwide Protein Data Bank , Biological Magnetic Resonance Data Bank, DDBJ - DNA Data Bank of Japan, Worldwide Protein Data Bank , PDBj - Protein Data Bank Japan, Research Collaboratory for Structural Bioinformatics Protein Data Bank, RCSB PDB, listed by: re3data.orgReferences (3)Last checked upnlx_32372
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