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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Sep 3, 2019)

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Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
BAMS ConnectivityResource, data or information resource, databaseDatabase of information about brain region circuitry, it collates data from the literature on tract tracing studies and provides tools for analysis and visualization of connectivity between brain regions.brain, neural circuitry, connectivity, brain region, neuroanatomy, neuronal tract tracing, connectomeSCR_000561(BAMS Connectivity, RRID:SCR_000561)Brain Architecture Management System related to: Integrated Manually Extracted Annotation, used by: NIF Data FederationLast checked downnlx_144138http://brancusi.usc.edu/bkms/, http://brancusi.usc.edu/
AutDBResource, service resource, data or information resource, data repository, storage service resource, databaseCurated public database for autism research built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The genetic information includes data from linkage and association studies, cytogenetic abnormalities, and specific mutations associated with ASD. New gene submissions are welcome. Modules: * Human Gene: thoroughly annotated list of genes that have been studied in the context of autism, with information on the genes themselves, relevant references from the literature, and the nature of the evidence. Uniquely, SFARI Gene incorporates information on both common and rare variants. * Animal Model: information about lines of genetically modified mice that represent potential models of autism. This information includes the nature of the targeting construct, the background strain and, most importantly, a thorough summary of the phenotypic features of the mice that are most relevant to autism. * Protein Interaction (PIN): compilation of all known direct protein interactions for those gene products implicated in autism. It presents both graphical and tabular views of interactomes, highlighting connections between autism candidate genes. Each protein interaction is manually verified by consultation with the primary reference. * Copy Number Variant (CNV): a parallel resource providing genetic information about all known copy number variants linked to autism. * Gene Scoring: includes a "score" for each autism candidate gene, based on an assessment of the strength of human genetic evidence.duplication, gene, genetic syndrome, genetic variation, allelic, autism, autism spectrum disorder, deletion, molecular function, molecular genetics, single-gene disruption, genetic association, genetic variation, allelic variant, copy number variant, cytogenetic, disruption, idiopathic asd, monogenic, mutation, polymorphism, human, animal model, mouse, protein interaction, sfari gene, phenotype, protein interaction, gene scoring, systems biologySCR_001872(AutDB, RRID:SCR_001872)SFARI - Simons Foundation Autism Research Initiative Autism Spectrum Disorder, AutismMindSpec: Informatics for Neurodevelopmental Conditionsrelated to: Integrated Manually Extracted Annotation, listed by: NIF Data Federation, 3DVC, Monarch InitiativePMID:19015121Last checked downnif-0000-02587http://www.mindspec.org/products/autdb/, https://gene.sfari.org/autdb/
NIDA Data ShareResource, catalog, data or information resource, databaseWebsite which allows data from completed clinical trials to be distributed to investigators and the public. This site allows researchers to download de-identified data from completed NIDA clinical trial studies to conduct analyses that improve the quality of drug abuse treatment. Secondary analyses produced from data sharing multiply the scientific contribution of the original research. The website incorporates data from the Division of Therapeutics and Medical Consequences and Center for Clinical Trials Network.drug of abuse, clinical, data, data sharing, human, clinical trial, experimental protocol, addiction, drug, addiction, data set, substance abuseSCR_002002(NIDA Data Share, RRID:SCR_002002)National Drug Abuse Treatment Clinical Trials Network NIDArelated to: NIDA Networking Project: Facilitating information exchange and research collaboration, Integrated Manually Extracted Annotation, used by: NIF Data Federation, Integrated DatasetsLast checked downnif-0000-21981http://www.ctndatashare.org/
Internet Brain Volume DatabaseResource, data or information resource, databaseA database of brain neuroanatomic volumetric observations spanning various species, diagnoses, and structures for both individual and group results. A major thrust effort is to enable electronic access to the results that exist in the published literature. Currently, there is quite limited electronic or searchable methods for the data observations that are contained in publications. This effort will facilitate the dissemination of volumetric observations by making a more complete corpus of volumetric observations findable to the neuroscience researcher. This also enhances the ability to perform comparative and integrative studies, as well as metaanalysis. Extensions that permit pre-published, non-published and other representation are planned, again to facilitate comparative analyses. Design strategy: The principle organizing data structure is the "publication". Publications report on "groups" of subjects. These groups have "demographic" information as well as "volume" information for the group as a whole. Groups are comprised of "individuals", which also have demographic and volume information for each of the individuals. The finest-grained data structure is the "individual volume record" which contains a volume observation, the units for the observation, and a pointer to the demographic record for individual upon which the observation is derived. A collection of individual volumes can be grouped into a "group volume" observation; the group can be demographically characterized by the distribution of individual demographic observations for the members of the group.anatomy, volume, dsm-iv, normal, schizophrenia, autistic disorder, bipolar disorder, major depressive disorder, alzheimer's disease, attention deficit-hyperactivity disorder, alcohol dependence, dementia, traumatic brain injury, borderline personality disorder, obsessive-compulsive disorder, asperger syndrome, brain, brain structure, in vivo, ex vivo, male, female, gorilla beringei beringei, pongo pygmaeus, volumetric analysisSCR_002060(Internet Brain Volume Database, RRID:SCR_002060)Harvard Medical School; Massachusetts; USA Normal, Alzheimers disease, Seizure, Complex febrile seizure, Holoprosencephaly, Alcohol dependence, Bipolar Disorder, Traumatic brain injury, SchizophreniaNINDS, The Human Brain Projectrelated to: NIF Data Federation, Integrated Manually Extracted Annotation, listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)PMID:21931990Last checked downnif-0000-00033http://www.nitrc.org/projects/ibvd
NeuroMorpho.OrgResource, service resource, data or information resource, data repository, storage service resource, databaseCentrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications that contains some of the most complete axonal arborizations digitally available in the community. Each neuron is represented by a unique identifier, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction, and a set of morphometric features. It contains contributions from over 100 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. Users may browse by species, brain region, cell type or lab name. Users can also download morphological reconstructions for research and analysis. Deposition and distribution of reconstruction files ultimately prevents data loss. Centralized curation and annotation aims at minimizing the effort required by data owners while ensuring a unified format. It also provides a one-stop entry point for all available reconstructions, thus maximizing data visibility and impact.neuron, morphological reconstruction, morphometry, axonal arborization, digital neuronal reconstruction, neuronal reconstruction, neuronal morphology, data sharing, annotation, brain region, neocortex, digital reconstruction, neurogenetics, neurochemistry, neuroscience, neurologySCR_002145(NeuroMorpho.Org, RRID:SCR_002145)George Mason University; Virginia; USA MURI, NINDSrelated to: DONE: Detection of Outlier NEurons, NIF Literature, Computational Neurobiology and Imaging Center, Integrated Manually Extracted Annotation, used by: NIF Data Federation, listed by: re3data.org, NeuroImaging Tools and Resources Collaboratory (NITRC)References (3)Last checked downnif-0000-00006http://www.nitrc.org/projects/neuromorpho_org
Avian Brain Circuitry DatabaseResource, image collection, spatially referenced dataset, service resource, storage service resource, atlas, image repository, data repository, data or information resourceTHIS RESOURCE IS NO LONGER IN SERVICE. Documented August 21, 2017.\\n\\nDatabase developed for storing, retrieving and cross-referencing neuroscience information about the connectivity of the avian brain. It contains entries about the new and old terminology of the areas and their hierarchy and data on connections between brain regions, as well as a functional keyword system linked to brain regions and connections.bird, relational database, anatomical atlas dataset, avian, brain region, connection, homologue, brain, structure, neuroanatomy, nomenclatureSCR_002401(Avian Brain Circuitry Database, RRID:SCR_002401)Szent Istvan University Faculty of Veterinary Science; Budapest; Hungary OTKA Foundationrelated to: Integrated Manually Extracted Annotation, used by: NIF Data Federation, Integrated Nervous System ConnectivityPMID:17889371Last checked downnif-0000-00386http://www.behav.org/abcd/
SumsDBResource, data analysis service, database, analysis service resource, production service resource, service resource, storage service resource, atlas, image repository, data repository, data or information resourceTHIS RESOURCE IS NO LONGER IN SERVICE, documented on May 11, 2016. Repository of brain-mapping data (surfaces and volumes; structural and functional data) derived from studies including fMRI and MRI from many laboratories, providing convenient access to a growing body of neuroimaging and related data. WebCaret is an online visualization tool for viewing SumsDB datasets. SumsDB includes: * data on cerebral cortex and cerebellar cortex * individual subject data and population data mapped to atlases * data from FreeSurfer and other brainmapping software besides Caret SumsDB provides multiple levels of data access and security: * Free (public) access (e.g., for data associated with published studies) * Data access restricted to collaborators in different laboratories * Owner-only access for work in progress Data can be downloaded from SumsDB as individual files or as bundles archived for offline visualization and analysis in Caret WebCaret provides online Caret-style visualization while circumventing software and data downloads. It is a server-side application running on a linux cluster at Washington University. WebCaret "scenes" facilitate rapid visualization of complex combinations of data Bi-directional links between online publications and WebCaret/SumsDB provide: * Links from figures in online journal article to corresponding scenes in WebCaret * Links from metadata in WebCaret directly to relevant online publications and figuressegmentation, volume, neuroimaging, brain, fmri, stereotaxic foci, stereotaxic coordinate, brain-mapping, foci, structural mri, mri, cerebral cortex, cerebellar cortex, afni brik, analyze, atlas, nifti, registration, rendering, spatial transformation, surface analysis, surface rendering, visualization, volume rendering, brain mapping, neuroanatomySCR_002759(SumsDB, RRID:SCR_002759)Washington University School of Medicine in St. Louis; Missouri; USA Mental disease, Neurological disorder, NormalHuman Brain Project, NASA, National Partnership for Advanced Computational Infrastructure, NCI, NIMH, NLM, NSFrelated to: Computerized Anatomical Reconstruction and Editing Toolkit, Integrated Manually Extracted Annotation, used by: NIF Data Federation, listed by: Biositemaps, NeuroImaging Tools and Resources Collaboratory (NITRC), re3data.orgLast checked downnif-0000-00016http://brainvis.wustl.edu/wiki/index.php/Sums:About http://www.nitrc.org/projects/sumsdb
Mouse Genome Informatics TransgenesResource, data set, data or information resourceData set of collected and annotated expression and activity data for recombinase-containing transgenes and knock-in alleles. As the authoritative source of official names for mouse genes, alleles, and strains, MGI makes this list of transgenes available as a service and includes all known transgenes and synonyms. NIF provides a database interface so that researchers may have a better idea whether the trangene or transgenic animal that they are searching for is available.
Nomenclature follows the rules and guidelines established by the International Committee on Standardized Genetic Nomenclature for Mice.
transgene, allele, phenotypeSCR_003468(Mouse Genome Informatics Transgenes, RRID:SCR_003468)Mouse Genome Informatics (MGI) related to: Integrated Manually Extracted Annotation, used by: NIF Data FederationLast checked downnif-0000-34000
SciCrunch RegistryResource, portal, database, community building portal, data or information resourceInteractive portal for finding and submitting biomedical resources. Resources within SciCrunch are assigned RRIDs which are used to cite resources in scientific manuscripts.nih initiative, interactive portal, rridSCR_005400(SciCrunch Registry, RRID:SCR_005400)Neuroscience Information Framework , NeuroLex Department of Health and Human Services, NIDArelated to: NIF Web Services, Neuroscience Information Framework, bioDBcore, NeuroLex, Integrated Manually Extracted Annotation, used by: NIF Data Federation, Aging Portal, Resource Identification Portal, Integrated Datasets, recommended by: Resource Identification Portal, recommends: Resource Identification Portal, listed by: FORCE11PMID:22434839Last checked downnlx_144509https://scicrunch.org/scicrunch/data/source/nlx_144509-1/search, https://scicrunch.org/browse/dashboard, https://scicrunch.org/scicrunch/Resources/search?q=*http://neuinfo.org/nif/nifgwt.html?tab=registry, https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_144509-1, https://neuinfo.org/mynif/search.php?q=*&t=registry
Brain Architecture Management SystemResource, data repository, ontology, database, service resource, storage service resource, controlled vocabulary, data or information resourceKnowledge management system designed to handle neurobiological information at different levels of organization of vertebrate nervous system. Database and repository for information about neural circuitry, storing and analyzing data concerned with nomenclature, taxonomy, axonal connections, and neuronal cell types. Handles data and metadata collated from original literature, or inserted by scientists that is\\nassociated to four levels of organization of vertebrate nervous system. Data about expressed molecules, neuron types and classes, brain regions, and networks of brain regions.neurobiology, vertebrate, nervous, system, database, repository, neural, circuitry, analysis, data, nomenclature, taxonomy, axonal, connection, cellSCR_007251(Brain Architecture Management System, RRID:SCR_007251)University of Southern California; Los Angeles; USA Human Brain Project, NIBIB, NIMH, NINDSrelated to: Integrated Manually Extracted Annotation, used by: NIF Data Federation, Integrated Nervous System ConnectivityLast checked downnif-0000-00018http://brancusi.usc.edu/bkms/
Animal Imaging DatabaseResource, database, service resource, storage service resource, image repository, data repository, data or information resourceTHIS RESOURCE IS NO LONGER AVAILABLE. Documented October 4, 2017.\\n\\nA sub-project of the Cell Centered Database (http://ccdb.ucsd.edu) providing a public repository for animal imaging data sets from MRI and related techniques. The public AIDB website provides the ability for browsing, visualizing and downloading the animal subjected MRI data. The AIDB is a pilot project to serve the current need for public imaging repositories for animal imaging data. The Cell Centered Database (CCDB) is a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy. The AIDB data model is modified from the basic model of the CCDB where microscopic images are combined to make 2D, 3D and 4D reconstructions. The CCDB has made available over 40 segmented datasets from high resolution magnetic resonance imaging of inbred mouse strains through the prototype AIDB. These data were acquired as part of the Mouse BIRN project by Drs. G. Allan Johnson and Robert Williams. More information about these data can be found in Badea et al. (2009) (Genetic dissection of the mouse CNS using magnetic resonance microscopy - Pubmed: 19542887)reconstruction, segmentation, mri, microscopy, brain, magnetic resonance microscopySCR_008002(Animal Imaging Database, RRID:SCR_008002)Cell Centered Database related to: Integrated Manually Extracted AnnotationLast checked downnif-0000-07736
NIF Registry Automated Crawl DataResource, data set, data or information resourceAn automatic pipeline based on an algorithm that identifies new resources in publications every month to assist the efficiency of NIF curators. The pipeline is also able to find the last time the resource's webpage was updated and whether the URL is still valid. This can assist the curator in knowing which resources need attention. Additionally, the pipeline identifies publications that reference existing NIF Registry resources as this is also of interest. These mentions are available through the Data Federation version of the NIF Registry, http://neuinfo.org/nif/nifgwt.html?query=nlx_144509 The RDF is based on an algorithm on how related it is to neuroscience. (hits of neuroscience related terms). Each potential resource gets assigned a score (based on how related it is to neuroscience) and the resources are then ranked and a list is generated.resource, mention, updateSCR_012862(NIF Registry Automated Crawl Data, RRID:SCR_012862)Neuroscience Information Framework NIDA, NIH Blueprint for Neuroscience Research, U.S. Department of Health and Human Servicesrelated to: PubMed Central, Integrated Auto-Extracted Annotation, Integrated Manually Extracted Annotation, PubMed, used by: NIF Data Federation, Integrated DatasetsPMID:22434839Last checked downnlx_144525http://lucene1.neuinfo.org/nif_resource/current/
YPEDResource, service resource, data or information resource, data repository, storage service resource, databaseOpen source system for storage, retrieval, and integrated analysis of large amounts of data from high throughput proteomic technologies. YPED currently handles LCMS, MudPIT, ICAT, iTRAQ, SILAC, 2D Gel and DIGE. The repository contains data sets which have been released for public viewing and downloading by the responsible Primary Investigators. It includes proteomic data generated by the Yale NIDA Neuroproteomics Center (http://medicine.yale.edu/keck/nida/index.aspx). Sample descriptions are compatible with the evolving MIAPE standards.proteomics, protein, database, mass spectrometry, neuroscience, data analysis service, small molecule, source code, peptide, protein expression, phosphoprotein, mudpit, dige, icat, itraqSCR_001436(YPED, RRID:SCR_001436)Yale School of Medicine; Connecticut; USA NHLBI, NIDArelated to: Integrated Manually Extracted Annotation, used by: Integrated Datasets, uses: PANTHERPMID:17867667Last checked upnlx_152660
AddgeneResource, catalog, data or information resource, databaseA non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids.\\n\\nAddgene’s mission is to accelerate research and discovery by improving access to useful research materials and information. We facilitate the sharing of high-quality scientific materials, research reproducibility, and open science by archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Our repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.plasmid, molecular biology, sequence alignment, repositorySCR_002037(Addgene, RRID:SCR_002037)Fees collected from plasmid sales support operation of the repositoryrelated to: zfishbook, GenomeCompiler, Phoenix, Integrated Manually Extracted Annotation, used by: NIF Data Federation, NIDDK Information Network, SGC, ZCre, uses: GenomeCompiler, listed by: One Mind Biospecimen Bank Listing, DataCite, re3data.orgDOI:10.1093/nar/gku893Last checked upnif-0000-11872
CHEBIResource, data or information resource, databaseCollection of chemical compounds and other small molecular entities that incorporates an ontological classification of chemical compounds of biological relevance, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms.complex, conformer, ion, ion pair, isotope, molecular entity, molecule, radical, radical ion, small molecule, obo, gold standard, biochemistry, metabolomicsSCR_002088(CHEBI, RRID:SCR_002088)European Bioinformatics Institute BBSRCrelated to: Pathway Commons, Integrated Manually Extracted Annotation, used by: Open PHACTS, Ultimate Rough Aggregation of Metabolic Map, RHEA, GEROprotectors, uses: IUPAC, NC-IUBMB, listed by: OBO, BioPortal, NIF Data Federation, SourceForgeReferences (3)Last checked upnif-0000-02655http://bioportal.bioontology.org/ontologies/1007, http://www.obofoundry.org/cgi-bin/detail.cgi?id=chebi, ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo, http://chebi.wiki.sourceforge.net/
Glomerular Activity Response ArchiveResource, data analysis service, production service resource, analysis service resource, database, image collection, service resource, data or information resourceTHIS RESOURCE IS NO LONGER IN SERVICE, documented on April 24, 2017. Database of images depicting the spatial distribution of 2-deoxyglucose uptake evoked in the glomerular layer of the rat olfactory bulb in response to a wide range of defined odorant stimuli. A number of different display and comparison tools are provided allowing patterns to be viewed from different perspectives, and descriptions of the methods and interpretations of these data are provided. Some of the more advanced tools require you to download software.rat, olfactory bulb, odorant stimuli, odorant, odor, glomerularSCR_002089(Glomerular Activity Response Archive, RRID:SCR_002089)University of California at Irvine; California; USA Human Brain Project, NIDCD, NIMHrelated to: Integrated Manually Extracted Annotation, used by: NIF Data FederationLast checked upnif-0000-00339
Cell Centered DatabaseResource, database, service resource, storage service resource, image repository, data repository, data or information resourceTHIS RESOURCE IS NO LONGER IN SERVICE, documented June 5, 2017. It has been merged with Cell Image Library. Database for sharing and mining cellular and subcellular high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging that makes unique and valuable datasets available to the scientific community for visualization, reuse and reanalysis. Techniques range from wide field mosaics taken with multiphoton microscopy to 3D reconstructions of cellular ultrastructure using electron tomography. Contributions from the community are welcome. The CCDB was designed around the process of reconstruction from 2D micrographs, capturing key steps in the process from experiment to analysis. The CCDB refers to the set of images taken from microscope the as the Microscopy Product. The microscopy product refers to a set of related 2D images taken by light (epifluorescence, transmitted light, confocal or multiphoton) or electron microscopy (conventional or high voltage transmission electron microscopy). These image sets may comprise a tilt series, optical section series, through focus series, serial sections, mosaics, time series or a set of survey sections taken in a single microscopy session that are not related in any systematic way. A given set of data may be more than one product, for example, it is possible for a set of images to be both a mosaic and a tilt series. The Microscopy Product ID serves as the accession number for the CCDB. All microscopy products must belong to a project and be stored along with key specimen preparation details. Each project receives a unique Project ID that groups together related microscopy products. Many of the datasets come from published literature, but publication is not a prerequisite for inclusion in the CCDB. Any datasets that are of high quality and interest to the scientific community can be included in the CCDB.electron microscope, light microscopy, electron tomography, electron microscopy, image, cell, microscopy, tomographySCR_002168(Cell Centered Database, RRID:SCR_002168)University of California at San Diego; California; USA related to: Cell Image Library (CIL), Cell Image Library (CIL), Whole Brain Catalog, Integrated Manually Extracted Annotation, used by: NIF Data Federation, Integrated Datasets, listed by: re3data.orgReferences (2)Last checked upnif-0000-00007
Zebra Model Organism Database (ZFIN)Resource, service resource, data or information resource, data repository, storage service resource, databaseZFIN is a Model Organism Database that serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. Data represented are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. ZFIN includes (i) access to images with associated curated data, (ii) gene expression and phenotype data, (iii) zebrafish models of human diseases, (iv) genomic features and molecular details, (v) a genome browser, (vi) transcripts, (vii) antibodies and (viii) a community wiki for protocols and antibodies. ZFIN welcomes direct data submissions. If you would like to make your unpublished expression or phenotype data available to the community, you can submit this data to ZFIN using Phenote program or contact zfinadmn@zfin.org for additional options and support. Additionally, data is downloadable as text files and available in the data mining platform zebrafishmine (zebrafishmine.org).expression, gene, anatomy, development, disease, genomic, model, molecular, mutant, neuronal, organism, phenotype, physiological, synteny, zebrafish, gene expression, genome sequence, molecular neuroanatomy resource, genotype, anatomical structure, publication, genome, image collection, gold standardSCR_002560(Zebra Model Organism Database (ZFIN), RRID:SCR_002560)University of Oregon; Oregon; USA NHGRIrelated to: AmiGO, Phenoscape Knowledgebase, MONARCH Disease Models View, Bgee: a dataBase for Gene Expression Evolution, NIH Data Sharing Repositories, HomoloGene, Zebrafish International Resource Center, Integrated Manually Extracted Annotation, used by: NIF Data Federation, Monarch Initiative, Resource Identification Portal, Morpholino Database, Integrated Animals, uses: InterMOD, recommended by: Resource Identification Portal, listed by: OMICtools, InterMOD, re3data.orgReferences (3)Last checked upnif-0000-21427, OMICS_01666http://zfin.org/ZFIN/misc_html/tips.html#newrecord, https://wiki.zfin.org/display/general/ZFIN+Data+Submissions
DrugBankResource, data or information resource, databaseBioinformatics and cheminformatics database that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information.drug, target, pathway, structure, pharmacology, drug class, chemical, pharmaceutical, drug target, sequence, reaction, interaction, protein, proteome, blast, data analysis service, small molecule-protein, small molecule, clinical medicine, pharmacy, medicine, pharmaceutical biotechnology, cheminformaticsSCR_002700(DrugBank, RRID:SCR_002700)University of Alberta; Alberta; Canada Canadian Institutes of Health Research, Genome Alberta, Genome Canada, GenomeQuest Inc.related to: ConsensusPathDB, PharmGKB Ontology, Allen Institute Neurowiki, Coremine Medical, MalaCards, PSICQUIC Registry, DrugPort, Integrated Manually Extracted Annotation, used by: NIF Data Federation, Monarch Initiative, Open PHACTS, In vivo - In silico Metabolite Database, GEROprotectors, listed by: OMICtools, re3data.orgReferences (3)Last checked upnif-0000-00417, OMICS_01580
GeneDBResource, data set, workshop, data or information resource, training resource, databaseDatabase of genomes at various stages of completion, from early access to partial genomes with automatic annotation through to complete genomes with extensive manual curation. Its primary goals are: 1) to provide reliable access to the latest sequence data and annotation/curation for the whole range of organisms sequenced by the Pathogen group, and 2) to develop the website and other tools to aid the community in accessing and obtaining the maximum value from these data.schizosaccharomyces, pombe, leishmania, major, trypanosoma, brucei, functional, genomics, proteomics, apicomplexan, protozoa, kinetoplastid, parasitic, helminths, bacteria, parasite vector, virusSCR_002774(GeneDB, RRID:SCR_002774)Wellcome Trust Sanger Institute; Hinxton; United Kingdom Wellcome Trustrelated to: TriTrypDB, Integrated Manually Extracted AnnotationPMID:14681429Last checked upnif-0000-02880http://old.genedb.org/, http://www.gdb.org/
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