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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

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32 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
GSE24060Resource, data set, data or information resourceCurated data set from a gene expression profiling study investigating monozygotic twin pairs with various systemic autoimmune diseases. RNA microarray analyses (Agilent Human 1A(V2) 20K oligo arrays) quantified differential gene expression in blood from 20 monozygotic (MZ) twin pairs, to minimize polymorphic gene effects, discordant for SAID (six with systemic lupus erythematosus (SLE), six rheumatoid arthritis (RA), eight idiopathic inflammatory myopathies (IIM)) and 40 unrelated matched controls.inflammation, gene expression profile, gene expressionSCR_003649(GSE24060, RRID:SCR_003649)RanchoBiosciences Monozygotic twin, Systemic autoimmune disease, Systemic lupus erythematosus, Rheumatoid arthritis, Idiopathic inflammatory myopathy, Controlrelated to: Gene Expression OmnibusLast checked downnlx_157801
Kidney and Urinary Pathway Knowledge BaseResource, data analysis service, production service resource, analysis service resource, data set, service resource, storage service resource, data repository, data or information resourceA collection of omics datasets (mRNA, proteins and miRNA) that have been extracted from PubMed and other related renal databases, all related to kidney physiology and pathology giving KUP biologists the means to ask queries across many resources in order to aggregate knowledge that is necessary for answering biological questions. Some microarray raw datasets have also been downloaded from the Gene Expression Omnibus and analyzed by the open-source software GeneArmada. The Semantic Web technologies, together with the background knowledge from the domain's ontologies, allows both rapid conversion and integration of this knowledge base. SPARQL endpoint http://sparql.kupkb.org/sparql The KUPKB Network Explorer will help you visualize the relationships among molecules stored in the KUPKB. A simple spreadsheet template is available for users to submit data to the KUPKB. It aims to capture a minimal amount of information about the experiment and the observations made.kidney, urinary, urine, pathway, molecule, visualizer, gene, protein, mirna, metabolite, mrna, microarray, ortholog, rdf, renal cell, anatomy, animal model, disease, sparql, proteomics, ontology, biomarker, gene expression, physiology, pathologySCR_001746(Kidney and Urinary Pathway Knowledge Base, RRID:SCR_001746)University of Manchester; Manchester; United Kingdom , National Institute of Health and Medical Research; Rennes; France Kidney diseaseEuropean Union, FP7, ICT-2007.4.4 e-LICO projectrelated to: NIDDK Information Network, Gene Expression Omnibus, Gene Ontology, KEGG, submitted by: NIDDK Information NetworkPMID:21624162Last checked downnlx_154134http://www.e-lico.eu/kupkb
GSE8650Resource, data set, data or information resourceCurated data set from analyzed gene expression profiles in 19 pediatric patients with SoJIA during the systemic phase of the disease (fever and/or arthritis), 25 SoJIA patients with no systemic symptoms (arthritis only or no symptoms), 39 healthy controls, 94 pediatric patients with acute viral and bacterial infections (available under GSE6269), 38 pediatric patients with Systemic Lupus Erythematosus (SLE), and 6 patients with a second IL-1 mediated disease known as PAPA syndrome.gene expression profile, gene expression, pediatric, young humanSCR_003647(GSE8650, RRID:SCR_003647)RanchoBiosciences Inflammatory disease, Systemic-onset Juvenile Idiopathic Arthritis, Healthy controlrelated to: Gene Expression OmnibusLast checked downnlx_157799
GSE17755Resource, data set, data or information resourceCurated data set from a study that contains a gene expression profile of peripheral blood cells (PBMCs) isolated from patients (248 in total) with rheumatoid arthritis (RA)/ systemic lupus erythematosus (SLE)/ polyarticular type juvenile idiopathic arthritis (polyJIA)/ Systemic onset juvenile idiopathic arthritis (sJIA) vs healthy children (HC) and healthy individual (HI).gene expression profile, gene expression, juvenile, child, inflammationSCR_003650(GSE17755, RRID:SCR_003650)RanchoBiosciences Inflammatory disease, Rheumatoid arthritis, Systemic lupus erythematosus, Polyarticular type juvenile idiopathic arthritis, Systemic onset juvenile idiopathic arthritisrelated to: Gene Expression OmnibusLast checked downnlx_157802
GSE13732Resource, data set, data or information resourceCurated data set from a study that developed biomarkers that may predict development of Clinically Isolated Syndrome (CIS) into a full multiple sclerosis. Expression data was taken from 37 CIS patients and 28 healthy controls at baseline. 34 CIS patients and 10 healthy controls were resampled at a second time point, approximately one year later. Patients were followed clinically for up to two years to determine the TTC (time to conversion to MS).expression, adult humanSCR_003648(GSE13732, RRID:SCR_003648)RanchoBiosciences Inflammatory disease, Clinically Isolated Syndrome, Multiple Sclerosis, Healthy controlrelated to: Gene Expression OmnibusLast checked downnlx_157800
NIDDK Information NetworkResource, resource, database, service resource, portal, storage service resource, data repository, community building portal, data or information resourceCommunity-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolicSCR_001606(NIDDK Information Network, RRID:SCR_001606)SciCrunch , University of California at San Diego; California; USA Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, obesity, Urologic diseaseNIDDKrelated to: MTOPS Prostate Samples Analysis Consortium , Neuroscience Information Framework, Diabetes Disease Portal, Kidney and Urinary Pathway Knowledge Base, dbMHC, Islet Cell Resource Centers , DGAP , Nuclear Receptor Resource , dkCOIN , Human Biological Data Interchange , National Gene Vector Biorepository, Creatinine Standardization Program , Glomerular Filtration Rate Calculators , Congressionally Directed Medical Research Program, National Kidney Disease Education Program , Network of Minority Health Research Investigators , National Endocrine and Metabolic Diseases Information Service , Kidney and Urinary Pathway Ontology, National Diabetes Information Clearinghouse , Digestive Diseases Statistics for the United States , Diabetes in America , National Digestive Diseases Information Clearinghouse , Diabetes Control and Complications Trial , National Hematologic Diseases Information Service , National Kidney and Urologic Diseases Information Clearinghouse , Nonhuman Primate Transplantation Tolerance Cooperative Study Group , Type 1 Diabetes Preclinical Testing Program , Diabetes Autoantibody Standardization Program, AASK Clinical Trial and Cohort Study , Maryland Genetics of Interstitial Cystitis , Frequent Hemodialysis Network Nocturnal Trial , Mammalian Gene Collection, Zebrafish Gene Collection, Boston Area Community Health Survey , Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia , Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study , Complementary and Alternative Medicine for Urological Symptoms , Mouse Mutagenesis Center for Developmental Defects , CARDS Database, ACCORD , Program to Reduce Incontinence by Diet and Exercise , Renal Disease Portal, Renin Angiotensin System Study , NIH Data Sharing Repositories, Kidney Development Database, GenePaint Interactive Anatomy Atlas, EMAGE Gene Expression Database, Gene Expression Omnibus, MGnify, uses: NIDDK Central Repository, Addgene, NIF Data Federation, Antibody Registry, Nuclear Receptor Signaling Atlas , GenitoUrinary Development Molecular Anatomy Project , Diabetic Complications Consortium , National Mouse Metabolic Phenotyping Centers , T1DBase , Beta Cell Biology Consortium , Grants.gov, dkNET Community Pilot Funding Opportunities, Integrated Grants, ClinicalTrials.gov, Integrated Animals, Intestinal Stem Cell Consortium, recommended by: National Library of Medicine, BRAIN Initiative, listed by: NIH Data Sharing Repositories, NIDDK Research Resources, lists: Diabetic Complications Consortium , Nephromine, LIPID Metabolites And Pathways Strategy, METLIN, NIDDK Inflammatory Bowel Disease Genetics Consortium, Body Mass Index Calculator, Symptom Score for Benign Prostatic Hyperplasia, Genetics of Kidneys in Diabetes, Type 1 Diabetes - Rapid Access to Intervention Development , TEDDY , Trans-Institute Angiogenesis Research Program , Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease , Current Research Information System, Healthy People, Acute Liver Failure Study Group , Collaborative Islet Transplant Registry , Diabetes Prevention Type 1 , Epidemiology of Diabetes Interventions and Complications , NIH Division of Nutrition Research Coordination, Human Nutrition Research Information Management, Type 1 Diabetes Resource , National Diabetes Education Program , Pediatric Acute Liver Failure Study , Globin Gene Server , NIH Chronic Prostatitis Symptom Index , Sequencing of Idd regions in the NOD mouse genome , Look AHEAD , Teen-Longitudinal Assessment of Bariatric Surgery , Adult to Adult Living Donor Liver Transplantation Cohort Study , Behavior Enhances Drug Reduction of Incontinence , BARI 2D, Childhood Liver Disease Research and Education Network , Standardization of C-peptide measurements , CKID A Prospective Cohort Study of Kidney Disease in Children , Diabetes Prevention Program , Diabetes Prevention Program Outcomes Study , Irritable Bowel Syndrome Outcome Study , Folic Acid for Vascular Outcome Reduction in Transplantation , Type 1 Diabetes TrialNet , Diabetes Research in Children Network, Diabetic Retinopathy Clinical Research Network, Clinical Islet Transplantation Study , Nonalcoholic Steatohepatitis Clinical Research Network , Drug-Induced Liver Injury Network , Family Investigation of Nephropathy of Diabetes , Frequent Hemodialysis Network Daily Trial , HEALTHY study , SISTEr , Urinary Incontinence Treatment Network , TINSAL-T2D , TOMUS , Type 1 Diabetes Genetics Consortium , Center for Inherited Disease Research , Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION), Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT) , Multidisciplinary Approach to the Study of Chronic Pelvic Pain Research Network (MAPP), Lifestyle Interventions for Expectant Moms (LIFE-Moms) , Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS), Nephrotic Syndrome Study Network (NEPTUNE), CKD Biomarkers Consortium, Porphyria Consortium, Vitamin D to Prevent Type 2 Diabetes (D2d) , Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) , Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) , Clinical Islet Transplantation Consortium (CITC), Restoring Insulin Secretion Consortium (RISE), Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) , Integrated Islet Distribution Program (IIDP) , Adolescent Bariatrics: Assessing Health Benefits and Risks (Teen-LABS), Human Islet Research Network (HIRN) , Rare Kidney Stone Consortium (RKSC), Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction , Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit , Intestinal Stem Cell Consortium , RiVuR , Gastroparesis Clinical Research Consortium , Urologic Diseases in America, United States Renal Data System , HALT PKD , Chronic Renal Insufficiency Cohort Study , Viral Resistance to Antiviral Therapy of Chronic Hepatitis C , Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C , HALT-C Trial , TRIGR, Treatment Options for type 2 Diabetes in Adolescents and Youth , Study of Nutrition in Acute Pancreatitis , SEARCH for Diabetes in Youth , Organ Procurement and Transplantation Network, Nuclear Receptor Signaling Atlas , NIH Common Fund, Mutant Mouse Regional Resource Center, GenitoUrinary Development Molecular Anatomy Project , National Mouse Metabolic Phenotyping Centers , IPD-MHC- Major Histocompatibility Complex, High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis , Hepatitis B Research Network, Functional Dyspepsia Treatment Trial , Cooperative Study Group for Autoimmune Disease Prevention , Clinical Outcomes Research Initiative , BISC, Beta Cell Biology Consortium , Autoimmunity Centers of Excellence , HemBase , Longitudinal Assessment of Bariatric Surgery , Minnesota Liver Tissue Cell Distribution System, Knockout Mouse Project, Immune Tolerance Network (ITN), Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal, ReBuilding a Kidney , GOA, NURSA Transcriptomine, STRING, Nuclear Receptor Cistrome, EuReGene, Embryo Images Normal and Abnormal Mammalian Development, Stem Cell Genome Anatomy Projects , Eurexpress, Gene Expression Database, ToppGene Suite , GATACA GUDMAP Gene Explorer , Knockout Mouse Project Repository, Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling (CHROMus), IMPC, JDRF, NIDDK Central Repository, Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB), Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC), T1DBase , NCI Specimen Resource Locator, NCBI database of Genotypes and Phenotypes, caHUB, T1D Exchange, NCBI, LANDMark BioBanks, Diabetes Research Centers , Network for Pancreatic Organ Donors with Diabetes, Nutrition and Obesity Research Centers , Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Antibody Validation and Vector Core , Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Cell Culture and Engineering, Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Clinical and Translational Core Resource , Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Mouse Models and Biobank , Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource, Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology , Boston Area Diabetes Endocrinology Research Center Metabolic Physiology , Boston Area Diabetes Endocrinology Research Center Molecular Biology , Boston Area Diabetes Endocrinology Research Center Pancreatic Islet , Boston Area Diabetes Endocrinology Research Center , Boston Area Diabetes Endocrinology Research Center Transgenic , Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core , Boston Children's Hospital Center of Excellence in Molecular Hematology , Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core , Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core , Boston Nutrition and Obesity Research Centers Adipose Biology and Nutrient Metabolism Core , Boston Nutrition and Obesity Research Centers Administrative Core , Boston Nutrition and Obesity Research Centers Epidemiology and Genetics Core , Boston Nutrition and Obesity Research Centers Functional Genomics and Bioinformatics Core , Boston Nutrition and Obesity Research Centers , Boston Nutrition and Obesity Research Centers Transgenic Core , Center for American Indian and Alaska Native Diabetes Translational Research Administrative Core , Center for American Indian and Alaska Native Diabetes Translational Research National Resource Core , Center for American Indian and Alaska Native Diabetes Translational Research Resource Cores , Center for American Indian and Alaska Native Diabetes Translational Research , Center for Iron and Heme Disorders at the University of Utah Administrative Core , Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core , Center for Iron and Heme Disorders at the University of Utah Metabolomics Core , Center for Iron and Heme Disorders at the University of Utah Mutation Generation and Detection Core , Center for Iron and Heme Disorders at the University of Utah , Center for the Study of Inflammatory Bowel Disease Clinical Core , Center for the Study of Inflammatory Bowel Disease Genetic Animal Models Core , Center for the Study of Inflammatory Bowel Disease Genetics Genomics and Molecular Biology Core , Center for the Study of Inflammatory Bowel Disease Immunology Core , Center for the Study of Inflammatory Bowel Disease Morphology Core , Center for the Study of Inflammatory Bowel Disease , Centers for Diabetes Translation Research , Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core , Chicago Center for Diabetes Translation Research Outcomes Improvement Core , Chicago Center for Diabetes Translation Research Quantitative Analysis Core , Chicago Center for Diabetes Translation Research , Cincinnati Digestive Health Center Clinical Component-Data Analysis and Management , Cincinnati Children's Hospital Digestive Health Center, Cincinnati Digestive Health Center Integrative Morphology , Cincinnati Digestive Health Center Pluripotent Stem Cell and Organoid Core , Cincinnati Digestive Health Center , Cleveland Digestive Diseases Research Core Center , Cleveland Digestive Diseases Research Core Facilities , Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core , Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core , Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core , Columbia Diabetes Research Center , Columbia Diabetes Research Center Translational Biomarker Analytical Core , Columbia University George M. O'Brien Urology Center , CURE - Digestive Diseases Research Center Administrative Core , CURE - Digestive Diseases Research Center Animal Models Core , CURE - Digestive Diseases Research Center Human Studies Core , CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core , CURE - Digestive Diseases Research Center Morphology and Imaging Core , CURE - Digestive Diseases Research Center , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Clinical Translational Core , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Histology Core , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Michael Hooker Microscopy Core Facility, Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Molecular Biology Core , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mouse Models Core , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mucus and Mucin Biochemistry and Biophysics Core , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Pre-Clinical Core , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center , Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Tissue Procurement and Cell Culture Core , Cystic Fibrosis Center - University of California San Francisco , Cystic Fibrosis Center University of Pittsburgh , Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core , Cystic Fibrosis Center - University of Washington Clinical Core , University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program, Cystic Fibrosis Center - University of Washington Host Response Core , Cystic Fibrosis Center - University of Washington Microbiology Core , Cystic Fibrosis Center - University of Washington , Cystic Fibrosis Research and Translation Centers , Digestive Disease Centers , Duke O'Brien Center for Kidney Research Animal Models Core , Duke O'Brien Center for Kidney Research Clinical and Translational Core , Duke O'Brien Center for Kidney Research Renal Genomics Core , Duke O'Brien Center for Kidney Research , Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core , Einstein-Mount Sinai Diabetes Research Center Biomarker and Analytical Research Core , Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core , Einstein-Mount Sinai Diabetes Research Center , Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core , Einstein-Mount Sinai Diabetes Research Center Translational Research Core , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging , Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank , George M. O'Brien Kidney Center at Yale Human Genetics and Clinical Research Core , George M. O'Brien Kidney Center at Yale Mouse Genetics and Cell Line Core , George M. O'Brien Kidney Center at Yale Renal Physiology Core , George M. O'Brien Kidney Center at Yale , George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Animal Models Core , George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Cell Biology and Imaging Core , George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Clinical and Translational Core , George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Physiology Core , George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center , Georgia Center for Diabetes Translation Research Design and Evaluation Core , Georgia Center for Diabetes Translation Research Disparities Core , Georgia Center for Diabetes Translation Research Engagement and Behavior Change Core , Georgia Center for Diabetes Translation Research , Gregory Fleming James Cystic Fibrosis Research Center Assay Core , Gregory Fleming James Cystic Fibrosis Research Center Cell Model and Evaluation Core , Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core , Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Clinical and Translational Core , Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Transmembrane Conductance Regulator Expression Core , Gregory Fleming James Cystic Fibrosis Research Center , Health Delivery Systems Center for Diabetes Translational Research California State Resource Program , Health Delivery Systems Center for Diabetes Translational Research Diabetes and Obesity Prevention Core , Health Delivery Systems Center for Diabetes Translational Research Health Disparities Core , Health Delivery Systems Center for Diabetes Translational Research Health Information Technology Core , Health Delivery Systems Center for Diabetes Translational Research , Hematology Centers , Indiana Diabetes Research Center Islet and Physiology Core , Indiana Diabetes Research Center Microscopy Core , Indiana Diabetes Research Center , Indiana Diabetes Research Center Swine Core , Indiana Diabetes Research Center Translation Core , Indiana O'Brien Center for Advanced Microscopic Analysis Administration Core , Indiana O'Brien Center for Advanced Microscopic Analysis Biosensor Development Core , Indiana O'Brien Center for Advanced Microscopic Analysis Digital Image Analysis Core , Indiana O'Brien Center for Advanced Microscopic Analysis Education Core , Indiana O'Brien Center for Advanced Microscopic Analysis Intravital Microscopy Core , Indiana O'Brien Center for Advanced Microscopic Analysis Probe Delivery Core , Indiana O'Brien Center for Advanced Microscopic Analysis , Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core , Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core , Indiana University Cooperative Center of Excellence in Hematology Flow Cytometry Core , Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core , Indiana University Cooperative Center of Excellence in Hematology , Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core , Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core , Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core , Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core , Johns Hopkins University - University of Maryland Diabetes Research Center Integrated Physiology Core , Johns Hopkins University - University of Maryland Diabetes Research Center Molecular and Translational Genomics Core , Johns Hopkins University - University of Maryland Diabetes Research Center , Joslin Diabetes Center Advanced Genomics and Genetics Core , Joslin Diabetes Center Advanced Microscopy Core , Joslin Diabetes Center Animal Physiology Core , Joslin Diabetes Center Bioinformatics and Biostatistics Core, Joslin Diabetes Center Enrichment Core , Joslin Diabetes Center Flow Cytometry Core , Joslin Diabetes Center Induced Pluripotent Stem Cell Core , Joslin Diabetes Center , Marion Bessin Liver Research Center Animal Models Stem Cells and Cell Therapy , Marion Bessin Liver Research Center Genetic Engineering and Gene Therapy , Marion Bessin Liver Research Center Imaging and Cell Structure , Marion Bessin Liver Research Center , Mayo Clinic Center for Cell Signaling in Gastroenterology Clinical Core , Mayo Clinic Center for Cell Signaling in Gastroenterology Gene Editing and Cell Engineering Core , Mayo Clinic Center for Cell Signaling in Gastroenterology Optical Microscopy Core , Mayo Clinic Center for Cell Signaling in Gastroenterology , Mayo Clinic O'Brien Urology Center Biostatistics and Epidemiology Core , Mayo Clinic O'Brien Urology Center Imaging Core , Mayo Clinic O'Brien Urology Center , Mayo Clinic O'Brien Urology Center Urine Phenotyping Core , Michigan Center for Diabetes Translational Research Administration Core , Michigan Center for Diabetes Translational Research Intervention and Technology Research Core , Michigan Center for Diabetes Translational Research MCDTR and UNC-Chapel Hill Peer Support Core , Michigan Center for Diabetes Translational Research Methods and Measurements Core , Michigan Diabetes Research Center Administrative Core , Michigan Diabetes Research Center Animal Studies Core , Michigan Diabetes Research Center Clinical Core , Michigan Diabetes Research Center Microscopy Imaging and Cellular Physiology Core , Michigan Diabetes Research Center Molecular Genetics Core , Michigan Diabetes Research Center OMICS Core , Michigan Diabetes Research Center , Mid-Atlantic Nutrition Obesity Research Center Biological Mechanisms and Functional Genomics Core , Mid-Atlantic Nutrition Obesity Research Center Biostatistics and Medical Informatics Subcore , Mid-Atlantic Nutrition Obesity Research Center Clinical and Translational Research Core , Mid-Atlantic Nutrition Obesity Research Center Molecular Genetics and Nutrigenomics Core , Mid-Atlantic Nutrition Obesity Research Center , MMPC-University of California Davis Administrative Core , MMPC-University of California Davis Animal Care Surgery and Pathology Core , MMPC-University of California Davis Endocrinology and Metabolism Core , MMPC-University of California Davis Energy Balance Exercise and Behavior Core , MMPC-University of California Davis Microbiome and Host Response Core , MMPC-University of California Davis , MMPC-University of Cincinnati Medical Center Cardiovascular and Renal Function Core , MMPC-University of Cincinnati Medical Center Energy Metabolism Food Intake and Body Weight Regulation Core , MMPC-University of Cincinnati Medical Center Lipid Lipoprotein and Glucose Metabolism Core , MMPC-University of Cincinnati Medical Center , MMPC-University of Massachusetts Medical School Analytical Core , MMPC-University of Massachusetts Medical School Animal Care Core , MMPC-University of Massachusetts Medical School Cardiovascular Core , MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core , MMPC-University of Massachusetts Medical School Islet Core , MMPC-University of Massachusetts Medical School Metabolism Core , MMPC-University of Massachusetts Medical School , MMPC-University of Michigan Medical School Animal Care and Germ-Free Mouse Core , MMPC-University of Michigan Medical School Metabolism Bariatric Surgery and Behavior Core , MMPC-University of Michigan Medical School Microbiome Core , MMPC-University of Michigan Medical School Microvascular Complications Core , MMPC-University of Michigan Medical School , MMPC-Vanderbilt University School of Medicine Analytical Resources Core , MMPC-Vanderbilt University School of Medicine Animal Health and Welfare Core , MMPC-Vanderbilt University School of Medicine Cardiovascular Pathophysiology Core , MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core , MMPC-Vanderbilt University School of Medicine , Molecular Biology and Next Generation Technology , Mouse Metabolic Phenotyping Centers , Mucosal HIV and Immunobiology Center Genetically-Defined Microbe Core , Mucosal HIV and Immunobiology Center Gnotobiotic and Genetically-Engineered Mouse Core , Mucosal HIV and Immunobiology Center Molecular Pathology and Human Cell and Tissue Core , Mucosal HIV and Immunobiology Center , New York Obesity Nutrition Research Center Animal Phenotyping Core , New York Obesity Nutrition Research Center Human Phenotyping Core , New York Obesity Nutrition Research Center , New York Regional Center for Diabetes Translation Research Latino Network for Diabetes Translational Research , New York Regional Center for Diabetes Translation Research Life Course Methodology Core , New York Regional Center for Diabetes Translation Research Population Health and Health Systems Core , New York Regional Center for Diabetes Translation Research , New York Regional Center for Diabetes Translation Research Translational Intervention Methodology Core , Nutrition and Obesity Research Centers at Harvard Administrative Core , Nutrition and Obesity Research Centers at Harvard Genomics and Cell Biology Core , Nutrition and Obesity Research Centers at Harvard Metabolic Imaging Core , Nutrition and Obesity Research Centers at Harvard Metabolic Phenotyping Core , Nutrition and Obesity Research Centers at Harvard , Nutrition and Obesity Research Centers at Harvard Statistical Consultation , O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core , O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston , O'Brien Kidney Centers , O'Brien Urology Centers , Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Biomarker Core , Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Gene Expression Core , Cincinnati Children's Hospital Pediatric Center of Excellence, Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center , Pediatric Centers of Excellence in Nephrology at Duke Division of Pediatric Nephrology , Pediatric Centers of Excellence in Nephrology at University of Virginia , Penn Diabetes Research Center Functional Genomics Core , Penn Diabetes Research Center Metabolomics Core , Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core , Penn Diabetes Research Center Pancreatic Islet Cell Biology Core , Penn Diabetes Research Center Radioimmunoassay and Biomarkers Core , Penn Diabetes Research Center , Penn Diabetes Research Center Transgenic and Chimeric Mouse Core , Pennington Biomedical Research Center Nutrition and Obesity Research Center Administrative Core , Pennington Biomedical Research Center Nutrition and Obesity Research Center Animal Models and Phenotyping Core , Pennington Biomedical Research Center Nutrition and Obesity Research Center Human Phenotyping Core , Pennington Biomedical Research Center Nutrition and Obesity Research Center Molecular Mechanisms Core , Pennington Biomedical Research Center Nutrition and Obesity Research Center , Pittsburgh Center for Kidney Research Biostatistical Analysis Services , Pittsburgh Center for Kidney Research Cellular Physiology , Pittsburgh Center for Kidney Research Kidney Imaging , Pittsburgh Center for Kidney Research Model Organisms , Pittsburgh Center for Kidney Research , Pittsburgh Center for Kidney Research Single Nephron and Metabolomics , Polycystic Kidney Disease Research and Translation Centers , Texas Medical Center Digestive Diseases Center Administrative Core , Texas Medical Center Digestive Diseases Center Cellular and Molecular Morphology Core , Texas Medical Center Digestive Diseases Center Functional Genomics and Microbiome , Texas Medical Center Digestive Diseases Center Integrative Biology Core , Texas Medical Center Digestive Diseases Center , Texas Medical Center Digestive Diseases Center Study Design and Clinical Research Core Services , Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Human Imaging Core , Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Model Systems Core , Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Molecular Genetics and Biomarker Core , Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester , UAB Hepatorenal Fibrocystic Diseases Core Center Cellular Physiology Resource , UAB Hepatorenal Fibrocystic Diseases Core Center Engineered Models Resource , UAB Hepatorenal Fibrocystic Diseases Core Center Hepato-Renal Fibrocystic Diseases Translational Resource , UAB Hepatorenal Fibrocystic Diseases Core Center , UAB Hepatorenal Fibrocystic Diseases Core Center Therapeutic Screening and Drug Development Resource , UAB-UCSD Core Center for Acute Kidney Injury Research Administrative Core , UAB-UCSD Core Center for Acute Kidney Injury Research Bioanalytical Core , University of Alabama at Birmingham-University of California San Diego O'Brien Center for Acute Kidney Injury Research Biostatistical Core, UAB-UCSD Core Center for Acute Kidney Injury Research Clinical Studies of AKI , UAB-UCSD Core Center for Acute Kidney Injury Research Pre-Clinical Studies of AKI , UAB-UCSD Core Center for Acute Kidney Injury Research , University of Alabama at Birmingham Diabetes Research Center Administrative Core , University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core , University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core , University of Alabama at Birmingham Diabetes Research Center Human Physiology Core , University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core , University of Alabama at Birmingham Diabetes Research Center , University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core , University of Alabama at Birmingham Nutrition and Obesity Research Center Biostatistics Core , University of Alabama at Birmingham Nutrition and Obesity Research Center Metabolism Core , University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core , University of Alabama at Birmingham Nutrition and Obesity Research Center , University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core , University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core , University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core , University of California San Diego - University of California Los Angeles Diabetes Research Center , University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core , University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core , University of California San Francisco Diabetes Research Center Cytometry and Cell Sorting Core , University of California San Francisco Diabetes Research Center Lentiviral RNAi Core , University of California San Francisco Diabetes Research Center Microscopy Core , University of California San Francisco Diabetes Research Center Mouse Genetics Core , University of California San Francisco Diabetes Research Center Mouse Metabolism Core , University of California San Francisco Diabetes Research Center , University of California San Francisco Nutrition and Obesity Research Center Genetics and Genomics Core , University of California San Francisco Nutrition and Obesity Research Center Human Metabolism Core , University of California San Francisco Nutrition and Obesity Research Center Mouse Metabolism and Imaging Core , University of California San Francisco Nutrition and Obesity Research Center , University of Chicago Diabetes Research and Training Center Administrative Core , University of Chicago Diabetes Research and Training Center Animal Models and Physiology Core , University of Chicago Diabetes Research and Training Center Islet Cell Biology 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Research Center , University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core , University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core , University of Washington Nutrition and Obesity Research Center Analytic Core , University of Washington Nutrition and Obesity Research Center Energy Balance Core , Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core , University of Washington Nutrition and Obesity Research Center , Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core , Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core , Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core , USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core 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Behavioral Intervention Technologies and Services Core , Vanderbilt Center for Diabetes Translation Research Community Engagement Core , Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core , Vanderbilt Center for Diabetes Translation Research , Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core , Vanderbilt Center for Diabetes Translation Research Translation Methods Core , Washington University Digestive Diseases Research Core Center Biobank Core , Yale Liver Center , Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core , Yale Liver Center Morphology Core , Washington University Digestive Diseases Research Core Center , Yale Liver Center Clinical and Translational Core , Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core , Yale Liver Center Cellular and Molecular Physiology Core , Washington 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for Gastrointestinal Biology and Disease Histology Core, University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core, University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core, University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases, University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core, University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core, University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core, University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core, Joslin Diabetes Center Molecular Phenotyping and Genotyping Core, University of Pennsylvania Diabetes Research Center, Preventing Early Renal Loss in Diabetes (PERL), Clinical Trials in Organ Transplantation in Children (CTOT-C), Clinical Trials in Organ Transplantation (CTOT) , Stanford Diabetes Research Center , Monogenic Diabetes Registry, Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin , National Glycohemoglobin Standardization Program, MetaCyto, JOINSOLVER, HASP, NetCirChro, Simmune, ABC Bacterial Transporter Systems Database, Kidney Precision Medicine Project, ValIdated Systematic IntegratiON of epigenomic data , The Human BioMolecular Atlas Program, Prevention of Lower Urinary Tract Symptoms, Illuminating the Druggable Genome , 4D Nucleome, submitted: MTOPS Prostate Samples Analysis Consortium , Body Mass Index Calculator, Symptom Score for Benign Prostatic Hyperplasia, Genetics of Kidneys in Diabetes, Type 1 Diabetes - Rapid Access to Intervention Development , TEDDY , Trans-Institute Angiogenesis Research Program , Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease , Current Research 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Vascular Outcome Reduction in Transplantation , Type 1 Diabetes TrialNet , Diabetes Research in Children Network, Diabetic Retinopathy Clinical Research Network, Clinical Islet Transplantation Study , Nonalcoholic Steatohepatitis Clinical Research Network , Drug-Induced Liver Injury Network , Family Investigation of Nephropathy of Diabetes , Frequent Hemodialysis Network Daily Trial , HALT PKD , HEALTHY study , Hepatitis B Research Network, HALT-C Trial , Immune Tolerance Network (ITN), Longitudinal Assessment of Bariatric Surgery , RiVuR , SEARCH for Diabetes in Youth , SISTEr , Urinary Incontinence Treatment Network , Study of Nutrition in Acute Pancreatitis , TINSAL-T2D , Treatment Options for type 2 Diabetes in Adolescents and Youth , TOMUS , TRIGR, Viral Resistance to Antiviral Therapy of Chronic Hepatitis C , Type 1 Diabetes Genetics Consortium , Diabetes Disease Portal, Kidney and Urinary Pathway Knowledge Base, dbMHC, Islet Cell Resource Centers , HemBase , DGAP , Nuclear 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with Chronic Hepatitis C , Cooperative Study Group for Autoimmune Disease Prevention , Diabetes Control and Complications Trial , Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit , National Hematologic Diseases Information Service , National Kidney and Urologic Diseases Information Clearinghouse , Nonhuman Primate Transplantation Tolerance Cooperative Study Group , Type 1 Diabetes Preclinical Testing Program , Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction , Diabetes Autoantibody Standardization Program, AASK Clinical Trial and Cohort Study , Maryland Genetics of Interstitial Cystitis , Frequent Hemodialysis Network Nocturnal Trial , Mammalian Gene Collection, Zebrafish Gene Collection, Boston Area Community Health Survey , Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia , Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study , Complementary and 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2 Diabetes (D2d) , Restoring Insulin Secretion Consortium (RISE), Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) , Clinical Islet Transplantation Consortium (CITC), Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) , Integrated Islet Distribution Program (IIDP) , Adolescent Bariatrics: Assessing Health Benefits and Risks (Teen-LABS), Human Islet Research Network (HIRN) , Rare Kidney Stone Consortium (RKSC), ReBuilding a Kidney , Genomic Data Commons Data Portal (GDC Data Portal), Network for Pancreatic Organ Donors with Diabetes, Ultimate Rough Aggregation of Metabolic Map, Alfa Chemicals, DataAssist, test Jemie, CDC Laboratory Quality Assurance and Standardization Programs, National Adrenal Diseases Foundation, Pituitary Network Association, American Thyroid Association, Endotext, MicrobiomeAnalyst, Osteogenesis Imperfecta Foundation, ALD Connect, MedCalc, Code Ocean, MassBank, MassBank of North America, In vivo - In silico Metabolite Database, XCMS, MetaboAnalyst, Helmsley Cellular Research Hub, Diabetes Biobank Brussels, Integrative Human Microbiome Project, DIAGRAM, Type2Diabetes.org, Trans-Omics for Precision Medicine (TOPMed) Program, BioBankEngine, AllofUs Research Program Biobank, CRowd Extracted Expression of Differential Signatures, National Gene Vector Laboratories, Research-tested Intervention Programs (RTIPs), Grid-Enabled Measures Database, International Institute for the Advancement of Medicine, Datasets2Tools, L1000 Fireworks Display, Harmonizome, L1000 Characteristic Direction Signature Search Engine, Direct Infusion Metabolite Database, HIRN Consortium on Beta Cell Death and Survival, HIRN Consortium on Human Islet Biomimetics, HIRN Consortium on Modeling Autoimmune Interactions, HIRN Consortium on Targeting and Regeneration, HIRN Human Pancreas Analysis Program, HIRN Bioinformatics Center, HLAsupE, PeMtb, Drug Gene Budger, Test, Kidney Precision Medicine Project, ValIdated Systematic IntegratiON of epigenomic data , The Human BioMolecular Atlas Program, Prevention of Lower Urinary Tract Symptoms, Illuminating the Druggable Genome , 4D Nucleome , Test011919Last checked downnlx_153866http://scicrunch.org/dknet
GSE27831Resource, data set, data or information resourceCurated data set from gene expression profiles of 29 unique samples from uveal melanoma patients that were measured on Affymetrix microarray. In addition, expression of syntenin-1 was measured by RT-PCR and this data is also available in the study.syntenin-1, gene expression profile, gene expression, eye, adult humanSCR_003646(GSE27831, RRID:SCR_003646)RanchoBiosciences Cancer, Uveal melanomarelated to: Gene Expression OmnibusLast checked downnlx_157798
GSE4922Resource, data set, data or information resourceCurated data set of a study that investigated the expression profiles of 347 primary invasive breast tumors on Affymetrix microarrays. Three separate breast cancer cohorts were analyzed: 1) Uppsala (n=249), 2) Stockholm (n=58), 3) Singapore (n=40). The Uppsala and Singapore data can be accessed in GSE4922. The Stockholm cohort data can be accessed at GEO Series GSE1456.adult human, expression profile, breastSCR_003557(GSE4922, RRID:SCR_003557)RanchoBiosciences Cancer, Breast cancer, Tumorrelated to: Gene Expression OmnibusLast checked downnlx_157796
GSE20194Resource, data set, data or information resourceCurated data set of gene expression data from 230 stage I-III breast cancers that were generated from fine needle aspiration specimens of newly diagnosed breast cancers before any therapy. The biopsy specimens were collected sequentially during a prospective pharmacogenomic marker discovery study between 2000 and 2008. These specimens represent 70-90% pure neoplastic cells with minimal stromal contamination. In the study, patients received 6 months of preoperative (neoadjuvant) chemotherapy including paclitaxel, 5-fluorouracil, cyclophosphamide and doxorubicin followed by surgical resection of the cancer.gene expression, chemotherapy, paclitaxel, 5-fluorouracil, cyclophosphamide, doxorubicin, adult humanSCR_003645(GSE20194, RRID:SCR_003645)RanchoBiosciences Cancer, Breast cancerrelated to: Gene Expression OmnibusLast checked downnlx_157797
GSE4271Resource, data set, data or information resourceCurated data set from a study that investigated 77 primary high-grade astrocytomas and 23 matched recurrences so that changes in gene expression related to both survival and disease progression can be identified. Samples in the study include WHO grade III and IV astrocytomas with a wide range of survival times.adult human, brain, gene expressionSCR_003643(GSE4271, RRID:SCR_003643)RanchoBiosciences Cancer, Astrocytomarelated to: Gene Expression OmnibusLast checked downnlx_157794
GSE4698Resource, data set, data or information resourceCurated data set where gene expression profiling was performed on 60 prospectively collected samples of children with first relapse of acute lymphoblastic leukemia enrolled on the relapse trial ALL-REZ BFM 2002 of the Berlin-Frankfurt-Muenster study group.young human, gene expression, relapse, male, female, gene expression profile, childSCR_003644(GSE4698, RRID:SCR_003644)RanchoBiosciences Cancer, Acute lymphoblastic leukemiarelated to: Gene Expression OmnibusLast checked downnlx_157795
GSE1456Resource, data set, data or information resourceCurated series of expression data for 159 tumors from which RNA could be collected in sufficient amounts and quality for analysis from breast cancer patients. Tissue material was collected from all breast cancer patients receiving surgery at Karolinska Hospital from 1994-1996.adult human, breastSCR_003642(GSE1456, RRID:SCR_003642)RanchoBiosciences Breast cancer, Tumorrelated to: Gene Expression OmnibusLast checked downnlx_157793
GSE13168Resource, data set, data or information resourceCurated data set from a study that assessed the effects of epidermal growth factor and interleukin 1-beta stimulation, and the modulatory effects of glucocorticoids treatment and protein kinase A inhibition, on the airway smooth muscle transcriptome by microarray analysis. The samples from 4 donors were subjected to different stimulations by Il-1b and EGF (or both) with or without pre-treatment with fluticasone, and data was collected at different timepoints.epidermal growth factor, interleukin 1-beta, glucocorticoid, protein kinase a, airway, smooth muscle, microarray, fluticasoneSCR_003651(GSE13168, RRID:SCR_003651)RanchoBiosciences Asthmarelated to: Gene Expression OmnibusLast checked downnlx_157803
ArrayQuestResource, analysis service resource, data analysis service, service resource, production service resourceA web-accessible program for the analysis of DNA microarray data. ArrayQuest is designed to apply any type of DNA microarray analysis program executable on a Linux system (i.e., Bioconductor statistical and graphical methods written in R as well as BioPerl and C++ based scripts) to DNA microarray data stored in the MUSC DNA Microarray Database, the Gene Expression Omnibus (GEO) or in a password protected private database uploaded to the center point server. ArrayQuest analyses are performed on a computer cluster.SCR_010935(ArrayQuest, RRID:SCR_010935)Medical University of South Carolina; South Carolina; USA NCI, NCRR, University Research Resource Foundationrelated to: MUSC DNA Microarray Database, Gene Expression Omnibus, listed by: OMICtoolsPMID:16321157Last checked upOMICS_00746
AnalyzeReplicationResource, software resourceSource code providing a cost-effectiveness metric for guiding the design of large-scale RNA-seq differentially expressed (DE) studies.rna-seq, differential expressionSCR_012030(AnalyzeReplication, RRID:SCR_012030)University of Chicago; Illinois; USA related to: Gene Expression Omnibus, listed by: OMICtoolsPMID:24319002Last checked upOMICS_02194
PlantNATsDB - Plant Natural Antisense Transcripts DataBaseResource, data analysis service, production service resource, analysis service resource, database, service resource, data or information resourceNatural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources involving approximately 2 million NAT pairs in 69 plant species. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs. GO annotation and high-throughput small RNA sequencing data currently available were integrated to investigate the biological function of NATs. A ''''Gene Set Analysis'''' module based on GO annotation was designed to dig out the statistical significantly overrepresented GO categories from the specific NAT network. PlantNATsDB is currently the most comprehensive resource of NATs in the plant kingdom, which can serve as a reference database to investigate the regulatory function of NATs.natural antisense transcript, annotation, high-throughput, small rna sequencing, function, regulatory function, predict, sequence, small rna, blastSCR_013278(PlantNATsDB - Plant Natural Antisense Transcripts DataBase, RRID:SCR_013278)Zhejiang University; Zhejiang; China Huazhong Agricultural University Scientific and Technological Self-innovation Foundation, Ministry of Science and Technology of China, National Natural Sciences Foundation of China, Program for New Century Excellent Talents in University of Chinarelated to: Gene Ontology, Gene Expression OmnibusPMID:22058132Last checked upnlx_151492
GEOqueryResource, software resourceSoftware that establishes a bridge between GEO and BioConductor.microarraySCR_000146(GEOquery, RRID:SCR_000146)Bioconductor , National Institutes of Health related to: Gene Expression Omnibus, GEO2R, listed by: OMICtoolsPMID:17496320Last checked upOMICS_01972
SMAGEXPResource, software resource, software toolkit, data analysis software, data processing software, software applicationSoftware toolkit for transcriptomics data meta-analysis. It integrates metaMA and metaRNAseq packages into Galaxy, carries out meta-analysis of gene expression data, handles microarray data from Gene Expression Omnibus (GEO) database, and more.transcriptomics, data, meta, analysis, MicroArrays, RNA-Seq, Galaxy, gene, expression, next, generation, sequencingSCR_016360(SMAGEXP, RRID:SCR_016360)related to: Galaxy, Gene Expression Omnibus, metaMA, metaRNASeqPMID:30698691Last checked up
Drug Gene BudgerResource, web service, software resource, data access protocol, web applicationWeb-based application to assist researchers with identifying drugs and small molecules that are predicted to maximally influence the expression of the mammalian gene of interest.\\nUsed to identify drugs and small molecules to regulate expression of target genes for research purpose only.identify, drug, small, molecule, predict, influence, expression, mammalian, gene, regulate, targetSCR_016489(Drug Gene Budger, RRID:SCR_016489)BD2K-LINCS Data Coordination and Integration Center Mount Sinai Knowledge Management Center for IDGrelated to: LINCS Project, Gene Expression Omnibus, Icahn School of Medicine at Mount Sinai, New York, USA, submitted by: NIDDK Information NetworkLast checked up
Gene Expression DatabaseResource, service resource, data or information resource, databaseCollection of gene expression information during mouse development in MGI. GXD has developed RNA-Seq and Microarray Experiment Search to find specific mouse expression studies in ArrayExpress and GEO. Based on standardized metadata annotations, users can specify age, anatomical structure, mutant alleles, strain and sex of samples of interest as well as experiment study type and key parameters.Collection, gene, expression, data, mouse, development, MGI, standardized, metadata, annotationSCR_017529(Gene Expression Database, RRID:SCR_017529)NICHDrelated to: ArrayExpress, Gene Expression Omnibus, submitted by: Resource Identification PortalLast checked up
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