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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

41 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
CAMRDResource, service resource, access service resourceResearch facility of the Department of Radiology at the Duke University Medical Center (DUMC) providing access to a whole-body, commercially manufactured 3 Tesla (Trio, Siemens Medical Systems) MR Imaging and Spectroscopy System with full research capability. The Center is fully equipped to perform clinical and research MR imaging or spectroscopy studies on humans or large animals. A full range of monitoring, anesthesia, RF coil development, computer and instrumental control facilities as well as MR research technologists and physics/chemistry consultation are available to Department of Radiology researchers and their collaborators.anesthesia, animal, chemistry, human, imaging, magnetic resonance, monitoring, mri, physics, radiology, research, rf coil, spectroscopy, technology, tesla, mr spectroscopy, clinical, researchSCR_001713(CAMRD, RRID:SCR_001713)Duke University; North Carolina; USA related to: Beta Cell Biology ConsortiumLast checked upnif-0000-10211
University of Colorado Boulder; Colorado; USAOrganization, degree granting program, training resourcePublic university that offers degrees in the sciences, humanities, and social sciences.university, research university, public university, colorado, degreeSCR_003114(University of Colorado Boulder; Colorado; USA, RRID:SCR_003114)University of Colorado; Colorado; USA related to: Beta Cell Biology ConsortiumLast checked upnlx_10266
University of Pennsylvania Perelman School of Medicine; Pennsylvania; USAResource, university, institutionSCR_013302(University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA, RRID:SCR_013302)University of Pennsylvania; Philadelphia; Pennsylvania related to: Alzheimers Disease Genetics Consortium, International Genomics of Alzheimers Project, Beta Cell Biology Consortium , Cancer Imaging Phenomics ToolkitLast checked upnlx_144491
Integrated Manually Extracted AnnotationResource, data set, data or information resourceA virtual database of annotations made by 50 database providers (April 2014) - and growing (see below), that map data to publication information. All NIF Data Federation sources can be part of this virtual database as long as they indicate the publications that correspond to data records. The format that NIF accepts is the PubMed Identifier, category or type of data that is being linked to, and a data record identifier. A subset of this data is passed to NCBI, as LinkOuts (links at the bottom of PubMed abstracts), however due to NCBI policies the full data records are not currently associated with PubMed records. Database providers can use this mechanism to link to other NCBI databases including gene and protein, however these are not included in the current data set at this time. (To view databases available for linking see, http://www.ncbi.nlm.nih.gov/books/NBK3807/#files.Databases_Available_for_Linking ) The categories that NIF uses have been standardized to the following types: * Resource: Registry * Resource: Software * Reagent: Plasmid * Reagent: Antibodies * Data: Clinical Trials * Data: Gene Expression * Data: Drugs * Data: Taxonomy * Data: Images * Data: Animal Model * Data: Microarray * Data: Brain connectivity * Data: Volumetric observation * Data: Value observation * Data: Activation Foci * Data: Neuronal properties * Data: Neuronal reconstruction * Data: Chemosensory receptor * Data: Electrophysiology * Data: Computational model * Data: Brain anatomy * Data: Gene annotation * Data: Disease annotation * Data: Cell Model * Data: Chemical * Data: Pathways For more information refer to Create a LinkOut file, http://neuinfo.org/nif_components/disco/interoperation.shtm Participating resources ( http://disco.neuinfo.org/webportal/discoLinkoutServiceSummary.do?id=4 ): * Addgene http://www.addgene.org/pgvec1 * Animal Imaging Database http://aidb.crbs.ucsd.edu * Antibody Registry http://www.neuinfo.org/products/antibodyregistry/ * Avian Brain Circuitry Database http://www.behav.org/abcd/abcd.php * BAMS Connectivity http://brancusi.usc.edu/ * Beta Cell Biology Consortium http://www.betacell.org/ * bioDBcore http://biodbcore.org/ * BioGRID http://thebiogrid.org/ * BioNumbers http://bionumbers.hms.harvard.edu/ * Brain Architecture Management System http://brancusi.usc.edu/bkms/ * Brede Database http://hendrix.imm.dtu.dk/services/jerne/brede/ * Cell Centered Database http://ccdb.ucsd.edu * CellML Model Repository http://www.cellml.org/models * CHEBI http://www.ebi.ac.uk/chebi/ * Clinical Trials Network (CTN) Data Share http://www.ctndatashare.org/ * Comparative Toxicogenomics Database http://ctdbase.org/ * Coriell Cell Repositories http://ccr.coriell.org/ * CRCNS - Collaborative Research in Computational Neuroscience - Data sharing http://crcns.org * Drug Related Gene Database https://confluence.crbs.ucsd.edu/display/NIF/DRG * DrugBank http://www.drugbank.ca/ * FLYBASE http://flybase.org/ * Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/ * Gene Ontology Tools http://www.geneontology.org/GO.tools.shtml * Gene Weaver http://www.GeneWeaver.org * GeneDB http://www.genedb.org/Homepage * Glomerular Activity Response Archive http://gara.bio.uci.edu * GO http://www.geneontology.org/ * Internet Brain Volume Database http://www.cma.mgh.harvard.edu/ibvd/ * ModelDB http://senselab.med.yale.edu/modeldb/ * Mouse Genome Informatics Transgenes ftp://ftp.informatics.jax.org/pub/reports/MGI_PhenotypicAllele.rpt * NCBI Taxonomy Browser http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html * NeuroMorpho.Org http://neuromorpho.org/neuroMorpho * NeuronDB http://senselab.med.yale.edu/neurondb * SciCrunch Registry http://neuinfo.org/nif/nifgwt.html?tab=registry * NIF Registry Automated Crawl Data http://lucene1.neuinfo.org/nif_resource/current/ * NITRC http://www.nitrc.org/ * Nuclear Receptor Signaling Atlas http://www.nursa.org * Olfactory Receptor DataBase http://senselab.med.yale.edu/ordb/ * OMIM http://omim.org * OpenfMRI http://openfmri.org * PeptideAtlas http://www.peptideatlas.org * RGD http://rgd.mcw.edu * SFARI Gene: AutDB https://gene.sfari.org/autdb/Welcome.do * SumsDB http://sumsdb.wustl.edu/sums/ * Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat http://www.temporal-lobe.com/ * The Cell: An Image Library http://www.cellimagelibrary.org/ * Visiome Platform http://platform.visiome.neuroinf.jp/ * WormBase http://www.wormbase.org * YPED http://medicine.yale.edu/keck/nida/yped.aspx * ZFIN http://zfin.orgbiomedical, bibliographic, linkout, literatureSCR_008876(Integrated Manually Extracted Annotation, RRID:SCR_008876)Integrated related to: BAMS Connectivity, BioGRID, BioNumbers, PubMed, Brain Architecture Management System, CellML Model Repository, CHEBI, Comparative Toxicogenomics Database, Coriell Cell Repositories, Drug Related Gene Database, DrugBank, Gene Weaver, Internet Brain Volume Database, Cell Centered Database, Brede Database, ModelDB, NeuronDB, NeuroMorpho.Org, Nuclear Receptor Signaling Atlas , Cell Image Library (CIL), Animal Imaging Database, Olfactory Receptor DataBase, Glomerular Activity Response Archive, CRCNS, OMIM, Rat Genome Database (RGD), Visiome Platform, NIDA Data Share, bioDBcore, Addgene, Antibody Registry, Beta Cell Biology Consortium , FlyBase, SumsDB, SciCrunch Registry, Mouse Genome Informatics Transgenes, NCBI Taxonomy, OpenNeuro, PeptideAtlas, Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat, NIF Registry Automated Crawl Data, AutDB, Gene Expression Omnibus, Gene Ontology, Avian Brain Circuitry Database, Zebrafish Information Network, GeneDB, WormBase, YPED, used by: NIF Data Federation, listed by: NeuroImaging Tools and Resources Collaboratory (NITRC), Gene Ontology ToolsReferences (2)Last checked downnlx_149407http://neuinfo.org/nif/nifgwt.html?query=nlx_149407, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_149407-1
Max Planck Institute for Heart and Lung Research; Bad Nauheim; GermanyResource, institutionSCR_011374(Max Planck Institute for Heart and Lung Research; Bad Nauheim; Germany, RRID:SCR_011374)Max-Planck-Gesellschaft related to: Beta Cell Biology ConsortiumLast checked upnlx_151480
Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USAResource, institutionSCR_003416(Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA, RRID:SCR_003416)related to: Alzheimers Disease Genetics Consortium, Beta Cell Biology ConsortiumLast checked upnlx_151872
University of Toronto; Ontario; CanadaResource, university, institutionSCR_011733(University of Toronto; Ontario; Canada, RRID:SCR_011733)related to: Alzheimers Disease Genetics Consortium, Beta Cell Biology Consortium , ShareLaTeX, UAMH Centre for Global Microfungal Biodiversity, cryoSPARC, Rtsne, uses: ShareLaTeX, WritefullLast checked upnlx_15536
Hebrew University Hadassah Medical School; Jerusalem; IsraelResource, university, institutionSCR_011277(Hebrew University Hadassah Medical School; Jerusalem; Israel, RRID:SCR_011277)Hebrew University of Jerusalem; Jerusalem; Israel related to: Beta Cell Biology ConsortiumLast checked upnlx_158441
Hadassah Medical Center; Jerusalem; IsraelResource, hospitalSCR_011261(Hadassah Medical Center; Jerusalem; Israel, RRID:SCR_011261)Hebrew University of Jerusalem; Jerusalem; Israel related to: Beta Cell Biology ConsortiumLast checked upnlx_158442
Seattle Childrens Research Institute; Washington; USAResource, institutionA top five pediatric research center in the nation that brings together the best minds in pediatric research to set new standards of pediatric care and find new cures for childhood diseases. Their goal is that every patient at Seattle Children''s has the opportunity to participate in, or benefit from, their groundbreaking research. The research institute is organized into nine centers, each one specializing in areas like cancer immunotherapy, neuroscience and child health and behavior. The centers are supported by faculty from the Treuman Katz Center for Pediatric Bioethics , the nation''s first pediatric bioethics center.SCR_011520(Seattle Childrens Research Institute; Washington; USA, RRID:SCR_011520)related to: Beta Cell Biology ConsortiumLast checked upnlx_158444
McEwen Centre for Regenerative MedicineResource, laboratory portal, portal, organization portal, data or information resourceCenter aiming to be a catalyst for regenerative medicine by facilitating collaboration, supporting research, and promoting awareness of the field. The center includes 15 scientists at five Toronto hospitals, as well as the University of Toronto, currently working to accelerate the development of more effective treatments for conditions such as heart disease, diabetes, respiratory disease and spinal cord injury. They collaborate with many other research institutions throughout North America, Europe and the Asia / Pacific region. The research is powered by a team of recent doctoral graduates recruited from around the world that are selected through a competitive process. They are a critical tool for supporting the work of McEwen Centre, allowing them to find medical breakthroughs faster.regenerative medicine, stem cell, postdoctoral program resourceSCR_004020(McEwen Centre for Regenerative Medicine, RRID:SCR_004020)Heart disease, Diabetes, Respiratory disease, Spinal cord injuryphilanthropic contributions, research grantsrelated to: Beta Cell Biology ConsortiumLast checked upnlx_158445
DanStemResource, topical portal, portal, data or information resourceCenter consisting of 9 research groups who all address basic questions in stem cell and developmental biology with the overall aim of developing new stem cell-based therapeutic approaches for diabetes and cancer. DanStem comprises two sections: * The Novo Nordisk Foundation Section for Basic Stem Cell Biology (BasicStem) * The Section for Strategic Translational Stem Cell Research and Therapy (TransStem) DanStem was established as a result of a series of international recruitments coupled with internationally recognized research groups focused on insulin producing beta cells and cancer research already located at the University of Copenhagen. They all have well-established, international collaborations and actively participate in several international scientific consortia. DanStem is also active in training undergraduates, PhD students and postdocs.stem cell, beta cell development, beta cell, insulinSCR_004021(DanStem, RRID:SCR_004021)University of Copenhagen; Copenhagen; Denmark Diabetes, CancerDanish Council for Strategic Research, Novo Nordisk Foundationrelated to: Beta Cell Biology ConsortiumLast checked upnlx_158446
Hagedorn Research Institute; Gentofte; DenmarkResource, institutionA diabetes research facility that focuses its research efforts on early applied research. This approach will be based on translational biology-based innovations in five main specialty areas: * Insulin & Incretins * Beta-cell Reconstitution * Stem-cell Therapy * Diabetes Inflammation * diabetes genetics The expanded research focus will aim to identify new biology-based targets for potential drugs to supply Novo Nordisk''s pipeline within the key areas of diabetes pathogenesis, treatment and cure. The discovery primarily takes place through in vitro assays with proteins and peptides. They serve as an early applied research center for Novo Nordisk''s Diabetes Research Unit (DRU) and as a strategic hub for DRU''s early discovery research.SCR_011262(Hagedorn Research Institute; Gentofte; Denmark, RRID:SCR_011262)related to: Beta Cell Biology ConsortiumLast checked downnlx_158447
University of Massachusetts; Massachusetts; USAResource, service resource, training service resourceA five-campus public university system in Massachusetts. The system includes four universities, a medical school, and a satellite campus.public, university, system, boston, massachusetts, medicineSCR_000379(University of Massachusetts; Massachusetts; USA, RRID:SCR_000379)related to: Beta Cell Biology ConsortiumLast checked upnlx_18192
Imperial College London; London; United KingdomResource, university, institutionConsistently rated amongst the world''s best universities, Imperial College London is a science-based institution with a reputation for excellence in teaching and research.SCR_011293(Imperial College London; London; United Kingdom, RRID:SCR_011293)related to: EARIP, eTRIKS, IMIDIA, Kinetics for Drug Discovery, Beta Cell Biology Consortium , ShareLaTeX, Clonalframe, ClonalOrigin, uses: ShareLaTeX, ReadCube, Sparrho, Benchling, PaperpileLast checked upnlx_21884
University of Massachusetts Medical School; Massachusetts; USAResource, university, institutionSCR_011664(University of Massachusetts Medical School; Massachusetts; USA, RRID:SCR_011664)University of Massachusetts; Massachusetts; USA related to: Beta Cell Biology Consortium , Clinical and Translational Science Awards ConsortiumLast checked upnlx_23099
Vanderbilt University; Tennessee; USAResource, university, institutionSCR_011756(Vanderbilt University; Tennessee; USA, RRID:SCR_011756)related to: Alzheimers Disease Genetics Consortium, International AMD Genetics Consortium, Beta Cell Biology Consortium , Clinical and Translational Science Awards Consortium, Cooperative Human Tissue Network, redcap-to-nda, affiliated with: Diabetes Research CentersLast checked upnlx_24468
University of Copenhagen; Copenhagen; DenmarkOrganization, university, institutionUniversity and research institution in Denmark founded in 1479. Member of the International Alliance of Research Universities, along with University of Cambridge, Yale University, The Australian National University, and UC Berkeley.SCR_011627(University of Copenhagen; Copenhagen; Denmark, RRID:SCR_011627)related to: European Gram Negative AntiBacterial Engine, ORBITO, Beta Cell Biology Consortium , EMIFLast checked upnlx_26520
University of Texas Southwestern Medical Center; Texas; USAResource, university, institutionSCR_011724(University of Texas Southwestern Medical Center; Texas; USA, RRID:SCR_011724)University of Texas System; Texas; USA related to: Alzheimers Disease Genetics Consortium, Beta Cell Biology Consortium , Clinical and Translational Science Awards ConsortiumLast checked upnlx_27973
Harvard Medical School; Massachusetts; USAResource, university, institutionSCR_011267(Harvard Medical School; Massachusetts; USA, RRID:SCR_011267)Harvard University; Cambridge; United States related to: LINCS Information Framework, International AMD Genetics Consortium, Beta Cell Biology Consortium, uses: ScizzleLast checked upnlx_29403
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