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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Aug 10, 2019)

Physical Resource or Software Tool Software

2,398 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Coreva Human Milk BankResource, biomaterial resource supplyResource is currently not in service, documented July 29, 2016.SCR_000918(Coreva Human Milk Bank, RRID:SCR_000918)Last checked upnlx_28858http://www.coreva.net/services.html
Tumour Bank of ProvenceResource, biomaterial supply resource, material resource, tissue bankNot yet vetted by NIF curatorSCR_010694(Tumour Bank of Provence, RRID:SCR_010694)Last checked upnlx_80657
Autism-Spectrum QuotientResource, material resource, assessment test providerA 50 question psychological assessment that measures the symptoms of autism in adults, children and adolescents.adult human, child, adolescentSCR_003639(Autism-Spectrum Quotient, RRID:SCR_003639)AutismLast checked upnlx_157818
HLASeqResource, software resourceAn open-source software tool for accurate genotyping the human HLA genes from Illumina GA high-throughput sequencing data.genotyping, hla, next generation sequencing, gene, command-line, pythonSCR_004185(HLASeq, RRID:SCR_004185)SourceForge listed by: OMICtoolsLast checked upOMICS_01543
Singapore Tissue NetworkResource, biomaterial supply resource, material resource, tissue bankTHIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016.SCR_010697(Singapore Tissue Network, RRID:SCR_010697)Last checked downnlx_81651http://www.stn.org.sg/
Austrailasian Leukemia and Lymphoma Tissue BankResource, biomaterial supply resource, material resource, tissue bankNot yet vetted by NIF curatorSCR_010711(Austrailasian Leukemia and Lymphoma Tissue Bank, RRID:SCR_010711)Last checked upnlx_87496
Multiple Sclerosis Research Australia Brain BankResource, biomaterial supply resource, material resource, tissue bankNot yet vetted by NIF curatorSCR_010747(Multiple Sclerosis Research Australia Brain Bank, RRID:SCR_010747)Last checked upnlx_99028
YMDTI: Diffusion Tensor Images of Healthy Young MalesResource, data set, data or information resourceA dataset which contains diffusion tensor images of 93 healthy, young male subjects.data set, diffusion tensor image, young male subjectSCR_014183(YMDTI: Diffusion Tensor Images of Healthy Young Males, RRID:SCR_014183)listed by: NITRCLast checked up
RNAmotifsResource, software resourceSoftware that evaluates the sequence around differentially regulated alternative exons to identify clusters of short and degenerate sequences, referred to as multivalent RNA motifs.rna, motifSCR_000263(RNAmotifs, RRID:SCR_000263)Bitbucket listed by: OMICtoolsLast checked downOMICS_02287
Fraunhofer Institute for Toxicology and Experimental MedicineResource, institutionInstitute that offers contract research in the area of human health with a focus on airway research. The institute has pooled its competences to form six business units: Toxicology Testing; Pre-clinical Pharmacology; Early-Phase Clinical Trials; Registration and Risk Assessment; Environmental, Occupational and Consumer Protection; and Manufacturing of Biopharmaceuticals for Clinical Trials. Due to their broad spectrum of expertise, they are able to offer complete solutions from the idea to the product.SCR_011237(Fraunhofer Institute for Toxicology and Experimental Medicine, RRID:SCR_011237)Fraunhofer-Gesellschaft Asthma, Allergy, Chronic obstructive pulmonary diseaseLast checked upnlx_157955
French National Authority for HealthResource, institutionAn independent public scientific authority responsible for promoting the quality and safety of patient care and to guarantee equity within the healthcare system. HAS activities are diverse ranging from assessment of drugs, medical devices, and procedures to publication of guidelines to accreditation of healthcare organisations and certification of doctors. All are based on rigorously acquired scientific expertise. Training in quality issues and information provision are also key components of its work program.SCR_011238(French National Authority for Health, RRID:SCR_011238)related to: GetRealLast checked upnlx_158514
EEG DatabaseResource, data set, data or information resourceData set from a large study to examine EEG correlates of genetic predisposition to alcoholism. It contains measurements from 64 electrodes placed on the scalp sampled at 256 Hz (3.9-msec epoch) for 1 second. There were two groups of subjects: alcoholic and control. Each subject was exposed to either a single stimulus (S1) or to two stimuli (S1 and S2) which were pictures of objects chosen from the 1980 Snodgrass and Vanderwart picture set. When two stimuli were shown, they were presented in either a matched condition where S1 was identical to S2 or in a non-matched condition where S1 differed from S2. There were 122 subjects and each subject completed 120 trials where different stimuli were shown. The electrode positions were located at standard sites (Standard Electrode Position Nomenclature, American Electroencephalographic Association 1990). Zhang et al. (1995) describes in detail the data collection process. There are three versions of the EEG data set. * The Small Data Set (smni97_eeg_data.tar.gz) contains data for the 2 subjects, alcoholic a_co2a0000364 and control c_co2c0000337. For each of the 3 matching paradigms, c_1 (one presentation only), c_m (match to previous presentation) and c_n (no-match to previous presentation), 10 runs are shown. * The Large Data Set (SMNI_CMI_TRAIN.tar.gz and SMNI_CMI_TEST.tar.gz) contains data for 10 alcoholic and 10 control subjects, with 10 runs per subject per paradigm. The test data used the same 10 alcoholic and 10 control subjects as with the training data, but with 10 out-of-sample runs per subject per paradigm. * The Full Data Set contains all 120 trials for 122 subjects. The entire set of data is about 700 MBytes.genetic predisposition, eeg, gene, heredity, picture, stimuli, match, non-matchSCR_001581(EEG Database, RRID:SCR_001581)University of California at Irvine; California; USA Alcoholism, Alcoholic, ControlPMID:8590074Last checked upnlx_153818http://kdd.ics.uci.edu/databases/eeg/eeg.html
National Drug Code DirectoryResourceDrug database published by the Food and Drug Administration of unique universal product identifiers for all drugs manufactured, prepared, propagated, compounded, or processed by it for commercial distribution.drug database, drug code, FDASCR_013721(National Drug Code Directory, RRID:SCR_013721)Last checked up
POLYPHEMUSResource, software resourceR package for comparative analysis of RNA Polymerase II ChIP-Seq profiles by non-linear normalization.SCR_010870(POLYPHEMUS, RRID:SCR_010870)listed by: OMICtoolsPMID:22156059Last checked upOMICS_00468
National Center for Image-Guided TherapyResource, biomedical technology research center, training resourceBiomedical Technology Resource Center that serves as a national resource for all aspects of research into medical procedures that are enhanced by imaging. Its common goal is to provide more effective patient care. The center is focused on the multidisciplinary development of innovative image-guided intervention technologies to enable effective, less invasive clinical treatments that are not only more economical, but also produce better results for patients. The NCIGT is helping to implement this vision by serving as a proving ground for some of the next generation of medical therapies.clinical, patient care, imaging, medical procedureSCR_001419(National Center for Image-Guided Therapy, RRID:SCR_001419)Harvard Medical School; Massachusetts; USA NIBIBLast checked upnlx_152641
PhyloTree.orgResource, data set, data or information resourceA phylogenetic tree of global human mitochondrial DNA variation, based on both coding- and control-region mutations, and including haplogroup nomenclature.SCR_012948(PhyloTree.org, RRID:SCR_012948)listed by: OMICtoolsPMID:18853457Last checked upOMICS_01643
Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Resource, service resource, resource, core facility, access service resourceCore at BADERC which provides technical services and help for morphological studies and immunocytochemical work at the light and the electron microscopic levels.microscopy, immunofluorescence, immunogold, morphologySCR_015069( Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology , RRID:SCR_015069) Boston Area Diabetes Endocrinology Research Center DiabetesNIDDKlisted by: NIDDK Information NetworkLast checked up
Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core Resource, service resource, resource, core facility, access service resourceCore facility that provide support for diabetes translation research aiming to reduce health disparities and support translation research in the community.diabetes, translation, diabetes research, chicago, community participationSCR_015178( Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core , RRID:SCR_015178)University of Chicago; Illinois; USA , Chicago Center for Diabetes Translation Research DiabetesNIDDKlisted by: NIDDK Information NetworkLast checked up
DTI and Fibertools Software PackageResource, software resource, software application, image processing software, data processing software, software toolkitImplemented under MATLAB, this DTI image processing toolbox provides import-filters for several MR file standards, a processing unit to calculate the diffusion tensors; several GUI based tools to calculate fiber tracks and to evaluate the DTI dataset. The results can be filed as images with 3D impression or can be logged in formatted ASCII files. Tools and features: * DTI Processing Unit: Calculates the diffusion tensors and their eigenvalues and eigenvectors. Different file formats are supported (like DICOM, Bruker, binary files, Matlab structures). The standard SIEMENS and GE diffusion encoding schemes are supported; other schemes have to be defined in a separate text, .m or .mat file. * FiberTracking: ** Fiber tracking is realized by using the FACT algorithm (Mori et al., Annal. Neurol 1999). ** Probabilistic tracking realized by using the PiCo (Parker et al., JMRI 2003) approach but with DTI data as basis. It is possible to extract pathways between two seeds by combining two maps (Kreher et al., NeuroImage 2008). ** Global Fiber Tracking on basis of HARDI or DTI data. The method is based on the approach reported in (Marco Reisert et al: Global fiber reconstruction becomes practical. NeuroImage 54(2):955-62) * FiberViewer: ** Visualization and Navigation through different data modalities like DTI maps, fiber tracks, diffusion main directions. ** Supports different kinds of DTI maps (e.g. FA, Trace, lambda images ) ** Creation and manipulation of mask based ROIs. ** Selection of streamline fibers ** Visualization of probabilistic fiber tracking results ** Documentation by logging statistics of ROIs and fiber tracks into text files. ** Import/Export from/to ANALYZE or Nifti * 3D Visualizer: Visualization of map slices, ROIs, and fiber tracks with 3D impression. * Batch Editor: Automatic processing of high amounts of data. Possibility to link processing with SPM8 easily.diffusion, dti, fiber tracking, diffusion tensor, visualization, navigationSCR_001641(DTI and Fibertools Software Package, RRID:SCR_001641)University of Freiburg; Baden-Wurttemberg; Germany related to: Diffusion MRI of Traumatic Brain InjuryLast checked upnlx_153913
CelgeneResource, organization portal, commercial organization, production service resource, chemical supplier, material service resource, service resource, portal, reagent supplier, material resource, reagent manufacture, data or information resourceAn American global biotechnology company that manufactures drug therapies for cancer and inflammatory disorders. The company's major products are Thalomid (thalidomide), which is approved for the acute treatment of the cutaneous manifestations of moderate to severe erythema nodosum leprosum (ENL), as well as in combination with dexamethasone for patients with newly diagnosed multiple myeloma, and Revlimid (lenalidomide), for which the company has received FDA and EMA approval in combination with dexamethasone for the treatment of multiple myeloma patients who have received at least one prior therapy. Revlimid is also approved in the United States for the treatment of patients with transfusion-dependent anemia due to Low- or Intermediate-1-risk Myelodysplastic syndromes (MDS) associated with a deletion 5q cytogenetic abnormality with or without additional cytogenetic abnormalities. Both Thalomid and Revlimid are sold through proprietary risk-management distribution programs to ensure safe and appropriate use of these pharmaceuticals. Vidaza is approved for the treatment of patients with MDS. Celgene also receives royalties from Novartis Pharma AG on sales of the entire Ritalin family of drugs, which are widely used to treat Attention Deficit Hyperactivity Disorder (ADHD). (Adapted from Wikipedia) There are numerous clinical trials at major medical centers using compounds from Celgene. Investigational compounds are being studied for patients with incurable hematological and solid tumor cancers, including multiple myeloma, myelodysplastic syndromes, chronic lymphocyte leukemia (CLL), non-Hodgkin's lymphoma (NHL), glioblastoma, and ovarian, pancreatic and prostate cancer.biopharmaceutical, drug, immune, inflammatory, clinical, medical, hematological, tumor, myeloma, myelodysplatic, syndrome, lymphocyte, leukemia, lymphoma, glioblastoma, ovarian, pancreatic, prostate, medicine, biotechnologySCR_002955(Celgene, RRID:SCR_002955)Cancer, Immune disease, Inflammatory disease, Attention-Deficit Hyperactivity Disorderuses: FluoroFinderLast checked upnif-0000-30309
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