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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

515 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Adolescent Bariatrics: Assessing Health Benefits and Risks (Teen-LABS)OrganizationA consortium made up of five clinical centers and a data coordinating center. The goal of Teen-LABS is to conduct clinical, epidemiological, and behavioral research in adolescent bariatric surgery, through an observational prospective study protocol. Teen-LABS is an ancillary study to LABS, an observational study of adult bariatric surgery. Research staff, certified in standardized uniform data collection according to the protocol, collect data at pre-operative research visits, at surgery, 30 days and six months post-operative, and annual post-operative research visits at the five participating centers.adolescent, adult, bariatric surgery, teen, clinical, epidemiology, behavioral research, observational study, consortiumSCR_014388(Adolescent Bariatrics: Assessing Health Benefits and Risks (Teen-LABS), RRID:SCR_014388)listed by: NIDDK Information Network, NIDDK Research Resources, submitted by: NIDDK Information NetworkLast checked down
Becton Dickinson and CompanyOrganization, antibody supplier, instrument supplier, production service resource, material service resource, instrument manufacture, service resource, reagent supplier, material resourceA healthcare company that provides biomedical solutions and diagnostic and preclinical systems to life science professionals.medical, device, laboratory, instrument, antibody, reagent, diagnostic, healthcare, life science, researcher, clinical, pharmaceutical, industry, researchSCR_008418(Becton Dickinson and Company, RRID:SCR_008418)Last checked upnif-0000-30149
Mutant Mouse Resource and Research Center - Jackson LaboratoryOrganization, biomaterial supply resource, material resourceCenter for mutant mouse research and distribution. The objectives of the JAX MMRRC are to: identify and evaluate biomedically-significant mice, import/acquire and archive mouse strains, distribute mouse strains, and operate a control program to ensure genetic stability.mouse, mutation, clinical, research, biomedicine, genetics, gene, strainSCR_016446(Mutant Mouse Resource and Research Center - Jackson Laboratory, RRID:SCR_016446)NIH Office of the DirectorLast checked up
EnCor Biotechnology Inc.Organization, commercial organization, antibody supplier, production service resource, analysis service resource, service resource, reagent supplier, material resourceA company committed to the development, characterization and manufacture of antibody and ELISA type assays for academic, biopharmaceutical and clinical research.development, characterization, manufacture, antibody, ELISA, assay, reagent, academic, biopharmaceutical, clinical, research, serviceSCR_003951(EnCor Biotechnology Inc., RRID:SCR_003951)related to: University of Florida, Florida, USALast checked upnlx_152355
Mayo ClinicOrganization, institutionNonprofit academic medical center based in Rochester, Minnesota, focused on integrated clinical practice, education, and research. Highly specialized in cardiovascular diseases and surgery. Practice specializes in treating difficult cases through tertiary care and destination medicine.medical, academic, center, integrated, clinical, practice, cardiovascular, disease, surgerySCR_011383(Mayo Clinic, RRID:SCR_011383)related to: Alzheimers Disease Genetics Consortium, Clinical and Translational Science Awards Consortium, Care Connectivity Consortium, uses: KaggleLast checked upnlx_158051
Agilent TechnologiesOrganization, material resource, reagent supplier, commercial organization, antibody supplierCompany provides laboratories worldwide with analytical instruments and supplies, clinical and diagnostic testing services, consumables, applications and expertise in life sciences and applied chemical markets.instrument, service, software, supply, expertise, life science, clinical, diagnostic, testing, reagent, marketSCR_013575(Agilent Technologies, RRID:SCR_013575)Last checked upnlx_152258
International Neuroinformatics Coordinating FacilityOrganization, organization portal, international standard specification, standard specification, narrative resource, portal, data or information resourceIndependent international facilitator catalyzing and coordinating global development of neuroinformatics aiming to advance data reuse and reproducibility in global brain research. Integrates and analyzes diverse data across scales, techniques, and species to understand brain function and positively impact the health and well being of society.neuroinformatics, neuroscience, neuroimaging, clinical, brain, data, sharing, reuse, globalSCR_002282(International Neuroinformatics Coordinating Facility, RRID:SCR_002282) Royal Institute of Technology; Stockholm; Sweden , Karolinska Institutet; Stockholm; Sweden NSF, Swedish Foundation for Strategic Research, Swedish Research Councilrelated to: Spike Sorting Evaluation Project, Allen Brain Atlas API, SenseLab, listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)Last checked upnif-0000-00365
T1D ExchangeOrganization, organization portal, portal, data or information resourceProvides access to resources T1D researchers need to conduct clinical studies. Data sets from their clinic registry is openly available, as are new study results. They also offer use of T1D Discovery Tool, which allows users to search different fields from registry data, and T1D Exchange Biobank, which offers specimen types such as serum, plasma, white blood cells, DNA, and RNA.portal, dataset, type 1 diabetes, t1d, clinical, study, registry, dataSCR_014532(T1D Exchange, RRID:SCR_014532)listed by: NIDDK Information NetworkLast checked up
Prism Clinical ImagingOrganization, organization portal, service resource, portal, software resource, training service resource, data or information resourceProvides Prism softwares and services that integrate advanced imaging into the clinical workflow for brain mapping from acquisition through processing, visualization, and export to PACS. Prism integrates functional MRI, diffusion MRI, perfusion, MR spectroscopy, and PET/CT into a unified workflow for diagnosis and treatment planning in brain disorders. Processing is also available as a cloud deployed service, Prism Serve. Research support includes import/export for imaging and derived quantitative data in both DICOM and research formats such as AFNI and Trackviz.Commercial, organization, advance, imaging, diagnosis, treatment, brain, disorder, processing, clinical, supportSCR_016977(Prism Clinical Imaging, RRID:SCR_016977)Last checked up
ClinMetOrganization, portal, organization portal, commercial organization, data or information resourceCommercial organization that uses metabolomics to provide pharmaceutical companies with clinically relevant and practical insight into drug response and safety for renal and cardiovascular diseases, obesity and diabetes. Their combination of skills to achieve exhaustive understanding of a disease along with detailed clinical insights, signature panel of urine-based metabolomic biomarkers, proprietary metabolomics and computational expertise will accelerate the speed and success rate of drug development. ClinMet helps drug developers to efficiently transform promising compounds into safe and effective medicines. Their efficacy and toxicity indices enable pharmaceutical companies to make better clinical trial-related decisions and provide an increased understanding of a drug''s mechanism of action.metabolomics, drug, mechanism of action, clinical, clinical trial, drug efficacy, toxicity, drug discovery, drug development, kidney, safety, efficacy, medicineSCR_003979(ClinMet, RRID:SCR_003979)Kidney disease, Cardiovascular disease, Obesity, Diabetesrelated to: Kidney Health InitiativeLast checked upnlx_158384
Clinical Islet Transplantation Consortium (CITC)Organization, service resource, access service resourceNetwork of clinical centers and a data coordinating center established to conduct studies of islet transplantation in patients with type 1 diabetes.type 1 diabetes, consortium, network, islet transplantation, clinicalSCR_014385(Clinical Islet Transplantation Consortium (CITC), RRID:SCR_014385)NIAID, NIDDKlisted by: NIDDK Information Network, NIDDK Research Resources, Diabetes Research Centers, submitted by: NIDDK Information NetworkLast checked up
International Initiative for Traumatic Brain Injury ResearchOrganization, service resource, access service resourceProject whose goal is to improve health care and lessen the global burden of TBI through the discovery of causal relationships between treatments and clinically meaningful outcomes. InTBIR seeks to encourage well-designed, hypothesis-driven studies that include the collection of high quality data followed by rigorous statistical analysis.tbi, traumatic, brain, injury, neurology, neuroscience, neuroanatomy, medical, clinical, research, nihSCR_016237(International Initiative for Traumatic Brain Injury Research, RRID:SCR_016237)European Commission , Canadian Institutes of Health Research Last checked up
Comprehensive Biomarker CenterOrganization, service resource, commercial organizationCommercial organization that discovers, validates & analyzes genomic biomarkers with a focus on body fluid samples. Take advantage of their proven expertise in biomarker signature development and speed up your biomarker studies.biomarker, clinical research organization, genomic biomarker, genomic, diagnostic, testing, bodily fluid, clinical, dna, rna, dna extraction, rna extraction, microarray, next-generation sequencing, validation, micrornaSCR_003901(Comprehensive Biomarker Center, RRID:SCR_003901)related to: READNALast checked upnlx_158236
Stanford Diabetes Research Center Diabetes Clinical and Translational CoreOrganization, service resource, core facility, access service resourceWith the following services from the Diabetes Clinical and Translational Core (DCTC), members will receive training in biospecimen preservation, study design, data analysis, data management, use of statistical software and clinical trial conduct.diabetes, clinical, translation, specimen, study, design, data, statisticSCR_016212(Stanford Diabetes Research Center Diabetes Clinical and Translational Core, RRID:SCR_016212)NIDDKrelated to: Stanford Diabetes Research Center Diabetes Genomics Analysis CoreLast checked down
Stanford Diabetes Research Center Diabetes Immune Monitoring CoreOrganization, service resource, core facility, access service resourceCore facility that provides immune monitoring assays at the RNA, protein, and cellular level, as well as archiving, reporting, and data mining support for clinical and translational studies related to Diabetes. The DIMC is a specialized subcore of the Human Immune Monitoring Center (HIMC) at Stanford.diabetes, assay, immune, system, clinical, translational, human, dataSCR_016210(Stanford Diabetes Research Center Diabetes Immune Monitoring Core, RRID:SCR_016210)NIDDKrelated to: Stanford Diabetes Research Center Diabetes Genomics Analysis CoreLast checked down
Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive PopulationsResourceA consortium evaluating a new biomarker screening test that might help identify patients with rheumatoid arthritis (RA) who are unlikely to benefit from anti-tumor necrosis factor-alpha (TNFalpha) medications. BATTER-UP will enroll around 1,000 patients being treated by one of several marketed anti-TNF RA drugs: Enbrel, Remicade, Humira, Simponi, or Cimzia. Through data analyses and predictive response modeling, the consortium aims to better understand which patients with RA will derive the greatest benefit from TNF inhibitors. The investigators in this observational study will attempt to validate an 8-gene biomarker set based on work by Biogen Idec researchers as likely to predict anti-TNF responsiveness in patients with RA. In preliminary results, the 8-gene biomarker set predicted with 89% accuracy individuals who did not reach European League Against Rheumatism (EULAR) Disease Activity Score (DAS)-28 good response after 14 weeks of treatment. The 8 genes included in the screen are CLTB, MXRA7, CXorf52, COL4A3BP, YIPF6, FAM44A, SFRS2, and PGK1. Biological samples and clinical outcome information will be used to confirm and extend the utility of previously published biomarkers that can predict response to anti-TNF agents. These data may also generate new hypotheses for further testing. The BATTER-UP samples and data will be established as a reference set for investigation of personalized medicine in RA. The study will be a resource of DNA and other biological materials that can be investigated for biomarkers in the future as new technologies arise.anti-tumor necrosis factor-alpha, gene, biomarker, drug development, basic research, personalized medicine, enbrel, remicade, humira, simponi, cimzia, cltb, mxra7, cxorf52, col4a3bp, yipf6, fam44a, sfrs2, pgk1, clinical, dna, serum, plasma, rna, whole bloodSCR_004019(Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations, RRID:SCR_004019) ClinicalTrials.gov , Feinstein Institute for Medical Research Biogen Idec, Bristol-Myers Squibb, Centocor, Crescendo Bioscience, Genentech, Medco Health Solutions, Regeneron Pharmaceuticals, Sanofi-Aventisrelated to: Feinstein Institute for Medical Research, uses: ClinicalTrials.gov, listed by: Consortia-pediaLast checked upnlx_158440
Biomedical Diagnostics InstituteResourceAn academic-business-clinical partnership that sponsors research programs focused on the development of next-generation biomedical diagnostic devices. They aim to transform healthcare by pioneering advances in the science and technology of diagnostics and by translating these advances into clinical use. Building on key scientific insights, the BDI will now apply its established capabilities to create integrated Point-of-Care solutions, which will have major impacts on diagnosing disease and sustaining human health.device development, product development, device, diagnostic, microfluidics, molecular assay, signal detection, biomarker, custom antibody, clinical, healthcare, diagnostic device, antibody, consortiumSCR_004022(Biomedical Diagnostics Institute, RRID:SCR_004022)Dublin City University; Dublin; Ireland Industry partners, Science Foundation Irelandrelated to: Dublin City University, Dublin, Ireland, National University of Ireland, Galway, Ireland, Royal College of Surgeons in Ireland, Dublin, Ireland, Trinity College Dublin, Dublin, Ireland, listed by: Consortia-pediaLast checked upnlx_158448
Big Ten Cancer Research ConsortiumResourceA consortium that aims to transform cancer research through collaborative oncology trials that leverage the scientific and clinical expertise of the Big Ten universities. The goal is to align the conduct of cancer research through collaborative, hypothesis-driven, highly translational oncology trials that leverage the scientific and clinical expertise. The clinical trials that will be developed will be linked to molecular diagnostics, enabling researchers to understand what drives the cancers to grow and what might be done to stop them from growing. The consortium also leverages geographical locations and existing relationships among the cancer centers. One of the consortium's goals is to harmonize contracts and scientific review processes to expedite clinical trials. The consortium will only focus on phase 0 to II trials because larger trials - even a randomized phase II trial - are difficult to conduct at a single cancer center.oncology, drug development, basic research, clinical trial, clinical, genitourinary, gastrointestinal, thoracic, breast, nanotechnology, virus, triple-negative cellSCR_004025(Big Ten Cancer Research Consortium, RRID:SCR_004025)Hoosier Cancer Research Network Canceraffiliated with: Penn State Milton S. Hershey Medical Center, Pennsylvania, USA, University of Wisconsin-Madison, Wisconsin, USA, Rutgers University, New Jersey, USA, Northwestern University, Illinois, USA, University of Nebraska, Nebraska, USA, University of Minnesota Twin Cities, Minnesota, USA, Michigan State University, Michigan, USA, University of Michigan, Michigan, USA, University of Iowa, Iowa, USA, Indiana University, Indiana, USA, University of Illinois College of Medicine, Illinois, USALast checked upnlx_158452
DepressionTools.org Clinical Significance CalculatorResource, analysis service resource, data analysis service, service resource, production service resourceOnline instrument that estimates whether a biomarker predicting outcome of depression treatment is likely to be clinically significant.biomarker, clinical significance, treatment, clinical, outcome, software as a service, binary, genetic, continuous, effect sizeSCR_003873(DepressionTools.org Clinical Significance Calculator, RRID:SCR_003873)NEWMEDS Depressive Disorderuses: Hamilton Rating Scale for DepressionPMID:22256872Last checked upnlx_158198
omniBiomarkerResource, analysis service resource, data analysis service, service resource, production service resourceomniBiomarker is a web-application for analysis of high-throughput -omic data. Its primary function is to identify differentially expressed biomarkers that may be used for diagnostic or prognostic clinical prediction. Currently, omniBiomarker allows users to analyze their data with many different ranking methods simultaneously using a high-performance compute cluster. The next release of omniBiomarker will automatically select the most biologically relevant ranking method based on user input regarding prior knowledge. The omniBiomarker workflow * Data: Gene Expression * Algorithms: Knowledge-Driven Gene Ranking * Differentially expressed Genes * Clinical / Biological Validation * Knowledge: NCI Thesaurus of Cancer, Cancer Gene Index * back to Algorithmsgene, gene expression, algorithm, cancer, cancer gene, cancer gene index, biocomputing, biomarker, clinical, gene rankingSCR_005750(omniBiomarker, RRID:SCR_005750) Emory University; Georgia; USA , Georgia Institute of Technology; Georgia; USA CancerGeorgia Cancer Coalition, NCIPMID:19695674Last checked downnlx_149210
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