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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

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Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
InterMineResource, software resourceAn open source data warehouse system built for the integration and analysis of complex biological data that enables the creation of biological databases accessed by sophisticated web query tools. Parsers are provided for integrating data from many common biological data sources and formats, and there is a framework for adding data. InterMine includes a user-friendly web interface that works "out of the box" and can be easily customized for specific needs, as well as a powerful, scriptable web-service API to allow programmatic access to data.mac os x, unix/linux, windows, javaSCR_001772(InterMine, RRID:SCR_001772)University of Cambridge; Cambridge; United Kingdom Wellcome Trustlisted by: OMICtoolsPMID:24753429Last checked downOMICS_03840
BioMart ProjectResource, software resource, web service, data access protocolA query-oriented data management system that can be used with any type of data and is particularly suited for providing "data mining" like searches of complex descriptive data. BioMart comes with an "out of the box" website that can be installed, configured and customized according to user requirements. Further access is provided by graphical and text based applications or programmatically using web services or API written in Perl and Java. BioMart has built-in support for query optimization and data federation and in addition can be configured to work as a DAS 1.5 Annotation server. The process of converting a data source into BioMart format is fully automated by the tools included in the package. Currently supported RDBMS platforms are MySQL, Oracle and Postgres.biology, data, management, data mining, search, descriptive, graphical, application, perl, java, gold standardSCR_002987(BioMart Project, RRID:SCR_002987) European Bioinformatics Institute , Ontario Institute for Cancer Research Agence National de la Recherche, Breast Cancer Campaign Tissue Bank, Center for Genome Regulation, Center for Mathematical Modelling, Centre National de la Recherche Scientifique, European Molecular Biology Laboratory, Japanese Ministry of Education Culture Sports Science and Technology MEXT, National Research Foundation of Korea, Sandra Ibarra Foundation for Cancer, Spanish Government, U.S. Department of Energy, Wellcome Trustrelated to: Mouse Genome Informatics (MGI), used by: Blueprint EpigenomeLast checked upnif-0000-30184
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