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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

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Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Colon Therapy Research Consortium (COLTHERES)Resource, organization portal, portal, consortium, data or information resourceThe Colon Therapy Research (COLTHERES) consortium brings together clinical centers and translational researchers funded in the European Union to define and perform biomarker driven clinical trials to improve cancer therapy outcomes. This 4-year consortium will use comprehensively molecularly-annotated colon cancers as a "test-bed" to define specific biomarkers of response or resistance to signaling pathway agents.translational, clinical, colon cancer, colon, biomarkersSCR_013690(Colon Therapy Research Consortium (COLTHERES), RRID:SCR_013690)European UnionLast checked down
OpenAIREResource, project portal, portal, data or information resourceA research portal to share and obtain research data and journal articles openly accessible to all disciplines. Established to support the Open Access Policy, as set out by the ERC Scientific Council Guidelines for Open Access and the Open Access pilot launched by the European access, Europe, repository networks, project portal, research data, journal articlesSCR_013740(OpenAIRE, RRID:SCR_013740)European Unionrelated to: ZENODOLast checked down
GenomEUtwinResource, disease-related portal, topical portal, database, biomaterial supply resource, research forum portal, portal, material resource, data or information resourceTHIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. Study of genetic and life-style risk factors associated with common diseases based on analysis of European twins. The population cohorts used in the Genomeutwin study consist of Danish, Finnish, Italian, Dutch, English, Australian and Swedish twins and the MORGAM population cohort. This project will apply and develop new molecular and statistical strategies to analyze unique European twin and other population cohorts to define and characterize the genetic, environmental and life-style components in the background of health problems like obesity, migraine, coronary heart disease and stroke, representing major health care problems worldwide. The participating 8 twin cohorts form a collection of over 0.6 million pairs of twins. Tens of thousands of DNA samples with informed consents for genetic studies of common diseases have already been stored from these population-based twin cohorts. Studies targeted to cardiovascular traits are now being undertaken in MORGAM, a prospective case-cohort study. MORGAM cohorts include approximately 6000 individuals, drawn from population-based cohorts consisting of more than 80 000 participants who have donated DNA samples.genetic, environment, lifestyle, gene, diseaseSCR_002843(GenomEUtwin, RRID:SCR_002843)University of Helsinki; Helsinki; Finland TwinEuropean Unionrelated to: KI Biobank - TwinGene, listed by: One Mind Biospecimen Bank ListingLast checked downnif-0000-25218
Biobanking and Biomolecular Resources Research Infrastructure (BBMRI)Resource, topical portal, database, biomaterial supply resource, portal, material resource, data or information resourceBBMRI is a pan-European and internationally broadly accessible research infrastructure and a network of existing and de novo biobanks and biomolecular resources. The infrastructure will include samples from patients and healthy persons, representing different European populations (with links to epidemiological and health care information), molecular genomic resources and biocomputational tools to optimally exploit this resource for global biomedical research. During the past 3 years BBMRI has grown into a 53-member consortium with over 280 associated organizations (largely biobanks) from over 30 countries, making it the largest research infrastructure project in Europe. During the preparatory phase the concept of a functional pan-European biobank was formulated and has now been presented to Member States of the European Union and for associated states for approval and funding. BBMRI will form an interface between specimens and data (from patients and European populations) and top-level biological and medical research. This can only be achieved through a distributed research infrastructure with operational units in all participating Member States. BBMRI will be implemented under the ERIC (European Research Infrastructure Consortium) legal entity. BBMRI-ERIC foresees headquarters (central coordination) in Graz, Austria, responsible for coordination of the activities of National Nodes established in participating countries. BBMRI is in the process of submitting its application to the European Commission for a legal status under the ERIC regulation, with an expected start date at the end of 2011. Major synergism, gain of statistical power and economy of scale will be achieved by interlinking, standardizing and harmonizing - sometimes even just cross-referencing - a large variety of well-qualified, up-to date, existing and de novo national resources. The network should cover (1) major European biobanks with blood, serum, tissue or other biological samples, (2) molecular methods resource centers for human and model organisms of biomedical relevance, (3) and biocomputing centers to ensure that databases of samples in the repositories are dynamically linked to existing databases and to scientific literature as well as to statistical expertise. Catalog of European Biobanks Username: guest / Password: catalogue The catalogue is intended to be used as a reference for scientists seeking information about biological samples and data suitable for their research. The BBMRI catalogue of European Biobanks provides a high-level description of Europe''s biobanks characteristics using a portal solution managing metadata and aggregate data of biobanks. The catalogue can be queried by country, by biobank, by ICD-groups, by specimen types, by specific strengths, by funding and more. A search function is available for all data.blood, serum, tissue, dna, cdna, rna, plasma, cell line, bodily fluid, urine, blood cell isolate, buffy coat, patient, healthy, normal, cryopreserved, paraffin embedded, clinical dataSCR_004226(Biobanking and Biomolecular Resources Research Infrastructure (BBMRI), RRID:SCR_004226)Medical University of Graz; Graz; Austria All, Patient, Healthy, NormalEuropean Unionrelated to: BioResource Impact Factor, German Biobank Registry, BioMedBridges, Biological Resource Centre - National Institute for Cancer Research, listed by: One Mind Biospecimen Bank ListingLast checked downnlx_24389
KI Biobank - TwinGeneResource, disease-related portal, topical portal, research forum portal, biomaterial supply resource, portal, material resource, data or information resourceIn collaboration with GenomeEUtwin, the TwinGene project investigates the importance of quantitative trait loci and environmental factors for cardiovascular disease. It is well known that genetic factors are of considerable importance for some familial lipid syndromes and that Type A Behavior pattern and increased lipid levels infer increased risk for cardiovascular disease. It is furthermore known that genetic factors are of importance levels of blood lipid biomarkers. The interplay of genetic and environmental effects for these risk factors in a normal population is less well understood and virtually unknown for the elderly. In the TwinGene project twins born before 1958 are contacted to participate. Health and medication data are collected from self-reported questionnaires, and blood sampling material is mailed to the subject who then contacts a local health care center for blood sampling and a health check-up. In the simple health check-up, height, weight, circumference of waist and hip, and blood pressure are measured. Blood is sampled for DNA extraction, serum collection and clinical chemistry tests of C-reactive protein, total cholesterol, triglycerides, HDL and LDL cholesterol, apolipo??protein A1 and B, glucose and HbA1C. The TwinGene cohort contains more than 10000 of the expected final number of 16000 individuals. Molecular genetic techniques are being used to identify Quantitative Trait Loci (QTLs) for cardiovascular disease and biomarkers in the TwinGene participants. Genome-wide linkage and association studies are ongoing. DZ twins have been genome-scanned with 1000 STS markers and a subset of 300 MZ twins have been genome-scanned with Illumina 317K SNP platform. Association of positional candidate SNPs arising from these genomscans are planned. The TwinGene project is associated with the large European collaboration denoted GenomEUtwin (, see below) which since 2002 has aimed at gathering genetic data on twins in Europe and setting up the infrastructure needed to enable pooling of data and joint analyses. It has been the funding source for obtaining the genome scan data. Types of samples: * EDTA whole blood * DNA * Serum Number of sample donors: 12 044 (sample collection completed)quantitative trait loci, environmental factor, cardiovascular disease, environment, genetic, gene, lipid syndrome, lipid, health, medication, questionnaire, c-reactive protein, total cholesterol, triglyceride, hdl, ldl, cholesterol, apolipo-protein a1, apolipo-protein b, glucose, hba1c, genome-wide linkage study, genome-wide association study, genomeSCR_006006(KI Biobank - TwinGene, RRID:SCR_006006)Karolisnka Biobank TwinEuropean Union, NIH, SSF, VRrelated to: GenomEUtwin, Swedish Twin Registry, listed by: One Mind Biospecimen Bank ListingLast checked downnlx_151387
Genes to Cognition: Neuroscience Research ProgrammeResource, blog, topical portal, software application, narrative resource, portal, software resource, training material, data or information resourceA neuroscience research program that studies genes, the brain and behavior in an integrated manner, established to elucidate the molecular mechanisms of learning and memory, and shed light on the pathogenesis of disorders of cognition. Central to G2C investigations is the NMDA receptor complex (NRC/MASC), that is found at the synapses in the central nervous system which constitute the functional connections between neurons. Changes in the receptor and associated components are thought to be in a large part responsible for the phenomenon of synaptic plasticity, that may underlie learning and memory. G2C is addressing the function of synapse proteins using large scale approaches combining genomics, proteomics and genetic methods with electrophysiological and behavioral studies. This is incorporated with computational models of the organization of molecular networks at the synapse. These combined approaches provide a powerful and unique opportunity to understand the mechanisms of disease genes in behavior and brain pathology as well as provide fundamental insights into the complexity of the human brain. Additionally, Genes to Cognition makes available its biological resources, including gene-targeting vectors, ES cell lines, antibodies, and transgenic mice, generated for its phenotyping pipeline. The resources are freely-available to interested researchers.electrophysiological, es cell, functional, gene, gene-target vector, genetic, 1295s, allele, antibody, behavior, behavioral, brain, c57bl/6j, central nervous system, clone, cognition, computation, connection, deletion, disease, disorder, dlg3, dlg4, domain, genomic, guanylate kinase, hprt gene, hras1, human, knockout, learning, mechanism, memory, model, molecular, mouse, mutation, network, neuron, neuroscience, nmda receptor complex, pathogenesis, phenotyping, protein, proteomics, ptk2, strain, synapse, synaptic plasticity, syngap1, transgenic, modelSCR_007121(Genes to Cognition: Neuroscience Research Programme, RRID:SCR_007121)Wellcome Trust Sanger Institute; Hinxton; United Kingdom BBSRC, EPSRC, European Union, Framework Programme, Gatsby Charitable Foundation, Human Frontiers Science Programme, MRC, NSF, Wellcome Trustlisted by: 3DVCLast checked downnif-0000-10235
aneurISTResource, topical portal, production service resource, analysis service resource, data analysis service, standard specification, narrative resource, service resource, portal, knowledge environment, data or information resourceAn IT infrastructure for the management, integration and processing of data associated with the diagnosis and treatment of cerebral aneurysm and subarachnoid hemorrhage. This new paradigm to understand and manage cerebral aneurysms, provides an integrated decision support system to assess the risk of aneurysm rupture in patients and to optimize their treatments. aneurIST benefits patients with better diagnostics, prevention and treatment because it combines efforts of clinicians and industry. Through research clinicians gain a greater insight in aneurysm understanding, while industry will be dragged by these achievements to develop more suitable medical devices to treat the disease. This infrastructure : * Facilitate clinicians the diagnosis and study of the disease, as a result of providing a seamless access to patient data using data fusion and processing of complex information spanning from the molecular to the personal level. * Provide a better planning and personalization of minimally invasive interventional procedures for patients, after linking modern diagnostic imaging to computational tools. * Collaborate in the development, extension and exploitation of standards and protocols at all project stages. * Share biomedical knowledge providing access to a set of software tools and platforms such as aneuLink, aneuFuse, aneuRisk, aneuEndo, aneuCompute and aneuInfo. * Create awareness through scientific dissemination and collaboration. * Explore the business opportunities directly arising from aneurIST. It intends to provide an integrated decision support system to assess the risk of aneurysm rupture in patients and to optimize their treatments. Software: * aneuLink will create an IT environment with the goal of establishing a link between genomics and disease. * aneuFuse will fuse diagnostic, modelling and simulation data into a coherent representation of the patient''s condition. * aneuRisk will provide clinicians with a tool to facilitate the personalized risk assessment and guidelines establishment to treat patients. * aneuEndo will develop computational tools to optimize and customize the design of endovascular devices. * aneuInfo will enable access to clinical and epidemiological data distributed in public and project-specific protected databases. * aneuCompute will provide aneurIST with distributed computing capabilities ensuring secure data transport.gene, genetic, adult, cerebral aneurysm, cerebral brain hemorrhage, cerebral hemorrhage, cerebral parenchymal hemorrhage, cerebral hemorrhage, clinical, genomic, human, intracerebral hemorrhage, intracranial aneurysm, subarachnoid hemorrhage, risk, aneurysm rupture, patient, treatment, infrastructure, platform, genomics, disease, personalized risk assessment, bioinformatics, clinical, data management, data integration, data processing, software tool, cerebrumSCR_007427(aneurIST, RRID:SCR_007427)Pompeu Fabra University; Barcelona; Spain Cerebral aneurysm, Subarachnoid hemorrhage, AgingEuropean Union, Sixth FPPriority 2 of the Information Society Technologies ISTLast checked downnif-0000-00538
Project DAREResource, project portal, organization portal, portal, consortium, data or information resourceEU data infrastructure with workflow connectivity layer. Common Workflow Language. Project pioneers methodologies and integrated set of supporting technologies that will transform European RIs productivity and rate of innovation when three challenges – extreme data, extreme computation and extreme complexity – are faced simultaneously.European Union, infrastructure, workflow, connectivity, layer, methodology, integrated, data, AgileSCR_017538(Project DARE, RRID:SCR_017538)European UnionLast checked up
IMEx - The International Molecular Exchange ConsortiumResource, organization portal, database, consortium, service resource, portal, storage service resource, data repository, community building portal, data or information resourceInteraction database from international collaboration between major public interaction data providers who share curation effort and develop set of curation rules when capturing data from both directly deposited interaction data or from publications in peer reviewed journals. Performs complete curation of all protein-protein interactions experimentally demonstrated within publication and makes them available in single search interface on common website. Provides data in standards compliant download formats. IMEx partners produce their own separate resources, which range from all encompassing molecular interaction databases, such as are maintained by IntAct, MINT and DIP, organism-centric resources such as BioGrid or MPIDB or biological domain centric, such as MatrixDB. They have committed to making records available, via PSICQUIC webservice, which have been curated to IMEx rules and are available to users as single, non-redundant set of curated publications which can be searched at the IMEx website. Data is made available in standards-compliant tab-deliminated and XML formats, enabling to visualize data using wide range of tools. Consortium is open to participation of additional partners and encourages deposition of data, prior to publication, and will supply unique accession numbers which may be referenced within final article. Submitters may send their data directly to any of member databases using variety of formats, but should conform to guidelines as to minimum information required to describe data.protein-protein interaction, nonredundant, protein interaction, interaction, proteomics, metadata standard, short course, molecular interactionSCR_002805(IMEx - The International Molecular Exchange Consortium, RRID:SCR_002805)European Bioinformatics Institute European Unionrelated to: MatrixDB, MPIDB, Database of Interacting Proteins, Database of Interacting Proteins, InnateDB, IntAct, Interaction Reference Index, MPIDB, Universal Protein Resource, InnateDB, MatrixDB, BioGRID, I2D, Molecular Connections NetPro, SIB Swiss Institute of Bioinformatics, IntAct, PSI-MI, PSICQUIC, mentha, Bioconductor, listed by: OMICtools, affiliated with: MINT, works_with: CellPhoneDB, Cytoscape, IntAct, MINT, MPact: Representation of Interaction Data at MIPS, Molecular Connections NetPro, BioGRID, InnateDB, BINDReferences (2)Last checked upnif-0000-00447, OMICS_01545
Gene OntologyResource, organization portal, consortium, portal, project portal, knowledge environment resource, data or information resourceComputable knowledge regarding functions of genes and gene products. GO resources include biomedical ontologies that cover molecular domains of all life forms as well as extensive compilations of gene product annotations to these ontologies that provide largely species-neutral, comprehensive statements about what gene products do. Used to standardize representation of gene and gene product attributes across species and databases.gene, product, annotation, molecular, function, cellular, biological, role, database, query, obo, gold standardSCR_002811(Gene Ontology, RRID:SCR_002811)European Union, NHGRIrelated to: GenNav, SynaptomeDB, High-Throughput GoMiner, Onto-Design, OnEx - Ontology Evolution Explorer, Avadis, GONUTS, PiNGO, Automated Microarray Pipeline, categoryCompare, globaltest, Semantic Measures Library, WegoLoc, AnimalTFDB, MEME Suite - Motif-based sequence analysis tools, Arabidopsis Hormone Database, DAVID, Arabidopsis thaliana Protein Interactome Database, TM4 Microarray Software Suite - TIGR MultiExperiment Viewer, pSTIING, GoMiner, FunSimMat, GeneSpeed- A Database of Unigene Domain Organization , Centre for Modeling Human Disease Gene Trap Resource, Patterns of Gene Expression in Drosophila Embryogenesis, Babelomics, BioPerl, GeneCruiser, GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool, GOToolBox Functional Investigation of Gene Datasets, Cotton EST Database, MouseNET, PLANTTFDB, T-profiler, Physico-Chemical Process, Integrated Molecular Interaction Database, SEGS, GOCat, Quantitative Enrichment of Sequence Tags, Neural-Immune Gene Ontology, INMEX, StRAnGER, QuickGO, Repository of molecular brain neoplasia data, Cardiovascular Gene Ontology Annotation Initiative, PANTHER, Short Time-series Expression Miner (STEM), DATFAP, GORetriever, Gene Ontology Browsing Utility (GOBU), GeneTools, GOSlimViewer, go-moose, Network Ontology Analysis, Onto-Compare, Onto-Express, OntoVisT, STRAP, CGAP GO Browser, COBrA, Gene Class Expression, GeneInfoViz, GOfetcher, GoFish, GOProfiler, GOanna, Manatee, Pandora - Protein ANnotation Diagram ORiented Analysis, TAIR Keyword Browser, Wandora, GOTaxExplorer, Onto-Miner, Onto-Translate, ToppGene Suite , DBD - Slim Gene Ontology, ONTO-PERL, Blip: Biomedical Logic Programming, OWL API, CLENCH, BiNGO: A Biological Networks Gene Ontology tool, CateGOrizer, FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products, ProteInOn, GeneMerge, GraphWeb, ClueGO, CLASSIFI - Cluster Assignment for Biological Inference, GOHyperGAll, FuncAssociate: The Gene Set Functionator, GOdist, FuncExpression, FunCluster, FIVA - Functional Information Viewer and Analyzer, GARBAN, GOEx - Gene Ontology Explorer, SGD Gene Ontology Slim Mapper, GOArray, SNPsandGO, GoSurfer, GOtcha, MAPPFinder, GoAnnotator, MetaGeneProfiler, OntoGate, ProfCom - Profiling of complex functionality, SerbGO, SOURCE, Ontologizer, THEA - Tools for High-throughput Experiments Analysis, Generic GO Term Mapper, GREAT: Genomic Regions Enrichment of Annotations Tool, GoBean - a Java application for Gene Ontology enrichment analysis, TXTGate, GO-Module, IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures, G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools, MalaCards, FSST - Functional Similarity Search Tool, Expression Profiler, GOChase, GoPubMed, Whatizit, REViGO, WEGO - Web Gene Ontology Annotation Plot, Blast2GO, InterProScan, PubSearch, TrED, CharProtDB: Characterized Protein Database, VirHostNet: Virus-Host Network, Pathbase, GO Online SQL Environment (GOOSE), Neurobehavior Ontology, InterSpecies Analysing Application using Containers, KOBAS, ConceptWiki, GeneTerm Linker, Bioconductor, ErmineJ, Gene Ontology For Functional Analysis (GOFFA), MGI GO Browser, Comparative Toxicogenomics Database, GOEAST - Gene Ontology Enrichment Analysis Software Toolkit, Ontology Lookup Service, LexGrid, WebGestalt: WEB-based GEne SeT AnaLysis Toolkit, G:Profiler, OwlSim, GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool, YeTFaSCo, FastSemSim, RamiGO, AutismKB, GeneCodis, FunSpec, FunNet - Transcriptional Networks Analysis, PhenoM - Phenomics of yeast Mutants, agriGO, GOblet, DynGO, SeqExpress, ProbeExplorer, ECgene: Gene Modeling with Alternative Splicing, Organelle DB, Gemma, Candidate Genes to Inherited Diseases, Proteome Analyst PA-GOSUB, Network Analysis, Visualization and Graphing TORonto, GOstat, Onto-Express To Go (OE2GO), Tk-GO, EGAN: Exploratory Gene Association Networks, Spotfire, GOMO - Gene Ontology for Motifs, GFINDer: Genome Function INtegrated Discoverer, Generic GO Term Finder, Agile Protein Interactomes DataServer, AgingDB, UBERON, Algal Functional Annotation Tool, gsGator, Flash Gviewer, Cerebellar Development Transcriptome Database, PlantNATsDB - Plant Natural Antisense Transcripts DataBase, EASE: the Expression Analysis Systematic Explorer, PiGenome, L2L Microarray Analysis Tool, MeGO, CELDA Ontology, Diabetes Disease Portal, MatrixDB, Kidney and Urinary Pathway Knowledge Base, MouseCyc, Candida Genome Database, Honey Bee Brain EST Project, ECO, FlyMine, Gramene, 3D-Interologs, Biomine, UniProtKB, NCBI BioSystems Database, EBIMed, Coremine Medical, EMAGE Gene Expression Database, GeneMANIA, Yeast Search for Transcriptional Regulators And Consensus Tracking, GeneTrail, Magic, Mouse Genome Informatics (MGI), FlyBase, InterPro, InnateDB, canSAR, HPRD - Human Protein Reference Database, CRCView, Integrated Manually Extracted Annotation, LegumeIP, Renal Disease Portal, PhenoGO, DOAF, OBO, used by: NIF Data Federation, GreenPhylDB, LIPID MAPS Proteome Database, Aging Portal, Monarch Initiative, ChannelPedia, Open PHACTS, CoPub, PhenoGO, Database for Annotation Visualization and Integrated Discovery, MitoMiner, dcGO, Pathway Analysis Tool for Integration and Knowledge Acquisition, barleyGO, SynGO, Functional Annotation, listed by: BioPortal, OBO, OMICtools, affiliated with: Mouse Genome Informatics: The Gene Ontology Project, works_with: topGO, DIANA-mirPathReferences (2)Last checked upnif-0000-02915, OMICS_02278
DTU Center for Biological Sequence AnalysisResource, topical portal, data access protocol, production service resource, analysis service resource, training resource, data analysis service, data set, web service, service resource, portal, software resource, data or information resourceThe Center for Biological Sequence Analysis of the Technical University of Denmark conducts basic research in the field of bioinformatics and systems biology and directs its research primarily towards topics related to the elucidation of the functional aspects of complex biological mechanisms. A large number of computational methods have been produced, which are offered to others via WWW servers. Several data sets are also available. The center also has experimental efforts in gene expression analysis using DNA chips and data generation in relation to the physical and structural properties of DNA. The on-line prediction services at CBS are available as interactive input forms. Most of the servers are also available as stand-alone software packages with the same functionality. In addition, for some servers, programmatic access is provided in the form of SOAP-based Web Services. The center also educates engineering students in biotechnology and systems biology and offers a wide range of courses in bioinformatics, systems biology, human health, microbiology and nutrigenomics.nucleotide, sequence, amino acid, dna, microarray, molecule, immunology, protein function, protein structure, protein, post-translational, whole genome, sequence analysisSCR_003590(DTU Center for Biological Sequence Analysis, RRID:SCR_003590)Technical University of Denmark; Lyngby; Denmark Danish Center for Scientific Computing, Danish National Research Foundation, Danish Research Councils, European Union, NIH, Novo Nordisk Foundation, Villum Kann Rasmussen FoundationLast checked upnlx_12329
Alzheimer EuropeResource, disease-related portal, topical portal, portal, data or information resourceA non-governmental organization aimed at raising awareness of all forms of dementia by creating a common European platform through co-ordination and co-operation between Alzheimer organizations throughout Europe. Alzheimer Europe is also a source of information on all aspects of dementia.SCR_003802(Alzheimer Europe, RRID:SCR_003802)Dementia, Alzheimer's diseaseEuropean Unionrelated to: Greek Association of Alzheimers Disease and Related Disorders, PharmaCog, EMIFLast checked upnlx_158313
EURORDISResource, topical portal, training resource, portal, data or information resourceEURORDIS is a non-governmental patient-driven alliance of patient organizations and individuals active in the field of rare diseases, dedicated to improving the quality of life of all people living with rare diseases in Europe. It is a not-for-profit organization and represents more than 479 rare disease organizations in 45 different countries (of which 25 are EU Member States), covering more than 4,000 rare diseases. It is therefore the voice of the 30 million patients affected by rare diseases throughout Europe. EURORDIS aims at improving the quality of life of people living with rare diseases in Europe through advocacy at the European level, support for research and drug development, networking patient groups, raising awareness and other actions designed to fight against the impact of rare diseases on the lives of patients and family. EURORDIS' training programs and resources are designed to strengthen the capacity of rare disease patients' representatives. Training empowers patients' representatives to advocate effectively for rare diseases at both the local and EU level. Key issues affecting patients of Rare Diseases on which we actively work: * Sustaining rare diseases as an EU public health priority * Making Rare Diseases A Public Health Priority In All Member States * Rare Diseases: An International Public Health Priority * Improving Access To Orphan Drugs * Improving Access To Quality Care * Promoting cross-border healthcare and patient mobility * Bridging Patients And Research * Genetic testing and newborn screeningSCR_003814(EURORDIS, RRID:SCR_003814)corporate foundations, European Union, French Muscular Dystrophy Association, health industry, membersLast checked upnlx_143535
AddNeuroMedResource, organization portal, database, portal, consortium, data or information resourceProject portal for a cross European study designed to find biomarkers, or tests, for Alzheimer's disease. Its objectives are to produce and improve experimental models of Alzheimer's for biomarker discovery and to identify a biomarker for Alzheimer's disease suitable for diagnosis, prediction, and monitoring disease progression for use in clinical trials and in clinical practice. The baseline dataset database was scheduled to be completed and locked in 2008 and become available to researchers by 2009. Requests to access the data will be reviewed by the scientific projects committee.biomarker, test, diagnostic, device, clinical, animal model, clinical trial, pre-clinical, consortium, disease progression, mri, proteomics, genomics, lipidomics, neuroimaging, mouse model, rat model, drosophila modelSCR_003819(AddNeuroMed, RRID:SCR_003819) King's College London; London; United Kingdom , Innovative Medicines Initiative EFPIA, European Unionrelated to: Innovative Medicines Initiative, University of Kuopio, Kuopio, Finland, University of Perugia, Perugia, Italy, Aristotle University of Thessaloniki, Thessaloniki, Greece, King's College London, London, United Kingdom, University of Lodz, Lodz, Poland, listed by: Consortia-pediaLast checked upnlx_158122
ProteomeXchangeResource, organization portal, database, consortium, catalog, service resource, portal, storage service resource, data repository, data or information resourceA data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas.consortium, database, proteomics, MS proteomics, protein, mass spectrometrySCR_004055(ProteomeXchange, RRID:SCR_004055)European Bioinformatics Institute European Unionrelated to: PRIDE, PeptideAtlas, SIB Swiss Institute of Bioinformatics, massIVE, European Bioinformatics Institute, uses: PRIDE, PeptideAtlas, affiliated with: Omics Discovery IndexLast checked upnlx_158620
PENTA-IDResource, disease-related portal, topical portal, training resource, portal, clinical trial, data or information resourceA Level 1 network for pediatric infectious disease in Europe recognized by the European networks of paediatric research at the European Medicines Agency (EnprEMA) whose activities vary from clinical trials, to cohort studies and training. It is currently developing a portfolio of clinical trials in antimicrobials in children, including antibiotics, antivirals and antifungals.clinical trial, cohort study, pediatric, young human, child, antimicrobial, antibiotic, antiviral, antifungalSCR_004092(PENTA-ID, RRID:SCR_004092)HIV, Infectious disease, AIDS, Tuberculosis, Drug resistanceEuropean Unionrelated to: EMIFLast checked upnlx_158553
FishBaseResource, topical portal, database, organism-related portal, service resource, portal, storage service resource, image repository, data repository, data or information resourceA global species database and encyclopedia of over 32,800 species and subspecies of fishes that is searchable by common name, genus, species, geography, family, ecosystem, references literature, tools, etc. It links to other, related databases such as the Catalog of Fishes, GenBack, and LarvalBase. It is associated with a partner journal, Acta Ichthyologica et Piscatoria. It is available in English, Greek, Spanish, Portuguese, French, Dutch, Italian, and German. Photo and video submissions are welcome. FishBase 2004 is also available on DVD or CD-ROMs with full information on 28,500 species. It comes together with the FishBase 2000 book and can be ordered for 95 US$ including, blog, photo, book, image, ichthyologySCR_004376(FishBase, RRID:SCR_004376)European Unionrelated to: Teleost Taxonomy Ontology, Phenoscape Knowledgebase, listed by: re3data.orgLast checked upnlx_39009
European Bioinformatics InstituteOrganization, organization portal, portal, data or information resourceNon-profit academic organization for research and services in bioinformatics. Provides freely available data from life science experiments, performs basic research in computational biology, and offers user training programme, manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures. Part of EMBL.organization, academic, bioinformatics, research, service, data, computational, biology, training, database, DNA, proteinSCR_004727(European Bioinformatics Institute, RRID:SCR_004727)European Molecular Biology Laboratory BBSRC, EMBL member states, European Union, Industry Programme partners, NIH, UK Research Councils, Wellcome Trustrelated to: AgedBrainSYSBIO, ProteomeXchange, Open PHACTS, RHEA, TraCeR, used by: Blueprint Epigenome, listed by: re3data.orgLast checked upnlx_72386
Causal Cognition GroupResource, topical portal, training resource, graduate program resource, undergraduate program resource, portal, degree granting program, data or information resourceAt the Website of the Causal Cognition Group (CCG) of the University of M??laga, you may read information about our group, its members, our research, main activities, and more. Our main interests are cognitive psychology and learning, and more recently cognitive neuroscience, physiological correlates of learning and cognitive control. This site is in constant evolution... though there are things that hardly change: Cognitio rei per causas.computational neuroscience, cognitive neuroscience, learning, cognitive control, erp, eeg, cognitive psychology, neuroscienceSCR_004780(Causal Cognition Group, RRID:SCR_004780)University of Malaga; Andalusia; Spain European Union, Junta de Andalucia, Spanish Ministry of ScienceLast checked upnlx_143899
OrphanetResource, service resource, topical portal, database, portal, data or information resourceEuropean website providing information about orphan drugs and rare diseases. It contains content both for physicians and for patients. Reference portal for rare diseases and orphan drugs to help improve diagnosis, care and treatment of patients with rare diseases.drug, clinical, diagnostic, test, rare, disease, molecule, gene, orphan, drugSCR_006628(Orphanet, RRID:SCR_006628)National Institute of Health and Medical Research; Rennes; France European Union, France, French Directorate General for Health, National Institute of Health and Medical Research, Rennesrelated to: Disease core ontology applied to Rare Diseases, phenomeNET, used by: NIF Data Federation, HmtPhenome, listed by: OMICtoolsLast checked upnif-0000-21306
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  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.