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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

274 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Tip-Tilt-Z Sample PositionerResource, material resourcePositioner for automated rotation of a head-fixed rodent specimen about the anterior-posterior and medio-lateral axes for imaging or other purposes. Provides automated Z translation and can be customized to accommodate various head bar designs.instrument, positioner, automated, rotation, head, fixed, rodent, imagingSCR_016528(Tip-Tilt-Z Sample Positioner, RRID:SCR_016528)Janelia Research Last checked upJanelia 2016-027https://flintbox.com/public/project/31339/
Advanced 3D Visualization and Volume ModelingResource, data analysis software, data processing software, software application, data visualization software, 3d visualization software, software resourceSoftware tool for visualizing, manipulating, and understanding data from tomography, microscopy, MRI and other imaging processes.Used to import and export options, to processes 3D image filtering and DTI based fiber tracking to visualization, volume and surface rendering, author tools for virtual reality navigation, video generation, and more.3d, data, visualization, tomography, imaging, process, MRI, microscopy, videoSCR_007353(Advanced 3D Visualization and Volume Modeling, RRID:SCR_007353)Last checked downnif-0000-00262, SCR_014305http://www.amiravis.com
Analyze Software SystemResource, software resource, software toolkit, software application, data processing software, image analysis softwareSoftware toolkit for the visualization, segmentation, registration and analysis of multidimensional biomedical imaging data. With Analyze, both anatomic structure and associated function can be studied and fused together for synergistic display and measurement of important structure-to-function relationships.mesh generation, volumetric analysis, registration, resampling, tractography, image display, rendering, platform environment, development environment, neuroimagingSCR_005988(Analyze Software System, RRID:SCR_005988)Mayo Clinic Minnesota; Minnesota; USA listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)Last checked downnif-0000-00263http://www.mayo.edu/bir/Software/Analyze/Analyze.html; https://www.nitrc.org/projects/analyze/
National Hydrocephalus FoundationResource, disease-related portal, topical portal, group, portal, community building portal, data or information resourceOnline portal with resources for education about hydrocephalus as well as community resources for those directly affected, family, and friends. The portal includes a community membership opportunity for people and families affected by hydrocephalus.hydrocephalus, patient portal, patient communitySCR_002008(National Hydrocephalus Foundation, RRID:SCR_002008)HydrocephalusLast checked upnif-0000-11667
Protein Interaction Map RiderResource, data analysis software, data processing software, database, software application, web application, software resource, data or information resourceWeb application used to exploration of protein pathways. It provides analysis and navigation within networks, overviews of biological connections between proteins, access to relevant literature and annotations, and comparisons of interaction and functional domains.protein pathways, genomic database, protein interaction mapsSCR_002108(Protein Interaction Map Rider, RRID:SCR_002108)Last checked downnif-0000-20900
FlowJoResource, software resource, software application, data analysis software, data processing softwareSoftware for single-cell flow cytometry analysis. Its functions include management, display, manipulation, analysis and publication of the data stream produced by flow and mass cytometers.single-cell analysis, flow cytometry, flow cytometer, mass cytometerSCR_008520(FlowJo, RRID:SCR_008520)has plug-in: SPADE, flowMeansLast checked upnif-0000-30575
NeuromorphometricsResource, organization portal, database, analysis service resource, production service resource, data analysis service, service resource, portal, data or information resourceWeb tool for brain measurement services. Used for modeling living human brain and make quantitative measurements of volume, shape, and location of specific neuroanatomical structures using given MRI brain scans. Automated analyses are manually guided, inspected and certified by a neuroanatomical expert. Resource of neuroanatomically labeled MRI brain scans database. Resource for neuroanatomical localization and identification: NeuAtlas.brain, human, modeling, measurement, quantitative, volume, shape, location, neuroanatomical, structure, MRI, scan, analysis, databaseSCR_005656(Neuromorphometrics, RRID:SCR_005656)NIMHrelated to: BrainColor: Collaborative Open Labeling Online Resource, 2012 MICCAI Multi-Atlas Labeling Challenge Data, listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)Last checked upnlx_149079, SCR_014141http://www.nitrc.org/projects/brain_labeling
Advanced Targeting SystemsResource, biomaterial supply resource, material resourceCommercial supplier of antibodies, assay kits, conjugates and various toxins for biomedical research. ATS's product line is designed to assist scientists in the study of system functions, cell functionality, diseases and disorders.antibody supplier, biomedical research resource, targeting reagentSCR_002328(Advanced Targeting Systems, RRID:SCR_002328)Last checked upnlx_152256
Hycult BiotechResource, biomaterial supply resource, material resourceCommercial supplier of antibodies and assay kits for biomedical research.biomedical research, antibody supplier, assay kit, research supplySCR_002245(Hycult Biotech, RRID:SCR_002245)Last checked upnlx_152377
R and D SystemsResource, material resource, reagent supplier, commercial organization, antibody supplierAn Antibody supplier who also provides assay services and products.antibody supplier, assay, serviceSCR_006140(R and D Systems, RRID:SCR_006140)Last checked upnlx_152445
SunnyLabResource, reagent supplier, material resource, antibody supplierAn antibody supplier that provides a range of human antigens, serum and plasma, and cell culture reagents.antibody, antigen, reagent, serum, plasma, culture, commercialSCR_000382(SunnyLab, RRID:SCR_000382)Last checked upnlx_152472
Vector LaboratoriesResource, biomaterial supply resource, material resourceA private antibody-producing corporation in Burlingame, California with subsidiaries in UK and Canada.antibody, supplier, reagent, commercial, burlingame, californiaSCR_000821(Vector Laboratories, RRID:SCR_000821)Last checked upnlx_152485
BrainVision AnalyzerResource, software resource, software application, data analysis software, data processing softwareSoftware to manage the daily work of analyzing various neurophysiological data. Features include a history tree, automated analysis, various data format readers, and more.Brain Products GmbH, neurophysiology, manage, data, analysisSCR_002356(BrainVision Analyzer, RRID:SCR_002356)related to: Brain Products, listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)Last checked upnlx_155717http://www.nitrc.org/projects/bva
Manually Labeled MRI Brain Scan DatabaseResource, database, data or information resourceCollection of neuroanatomically labeled MRI brain scans, created by neuroanatomical experts. Regions of interest include the sub-cortical structures (thalamus, caudate, putamen, hippocampus, etc), along with ventricles, brain stem, cerebellum, and gray and white matter and sub-divided cortex into parcellation units that are defined by gyral and sulcal landmarks.collection, neuroanatomical, MRI, brain, scan, data, thalamus, caudate, putamen, hippocampus, ventricle, cerebellum, cortexSCR_009604(Manually Labeled MRI Brain Scan Database, RRID:SCR_009604)Neuromorphometrics NIMHlisted by: NeuroImaging Tools and Resources Collaboratory (NITRC), works_with: MRI Neuroanatomy Labeling Services, MRI Neuroanatomy Labeling ServicesLast checked upnlx_155805http://www.nitrc.org/projects/manuallabels
Adobe IllustratorResource, software resource, software application, software toolkitVector graphics software to create digital graphics, illustrations, and typography for several types of media: print, web, interactive, video, and mobile.vector graphics, graphics, illustration, typography, adobe, softwareSCR_010279(Adobe Illustrator, RRID:SCR_010279)related to: Adobe Illustrator CS6, uses: National Gene Vector LaboratoriesLast checked upnlx_157287, SCR_014198http://www.adobe.com/products/cs6.html
SigmaStatResource, organization portal, data processing software, software application, data visualization software, portal, software resource, data or information resourceSoftware tool for data graphing and analysis by Systat Software, Inc.SCR_010285(SigmaStat, RRID:SCR_010285)Last checked upnlx_157306
CGH ExplorerResource, software resourceAn easy-to-use software tool for analyzing two color copy number alteration arrays from multiple platforms, including Agilent Technologies, Illumina, AffyMetrix, NimbleGen and others.SCR_010920(CGH Explorer, RRID:SCR_010920)listed by: OMICtoolsLast checked downOMICS_00708
ImaGeneResource, software resource, software application, data analysis software, data processing softwareSoftware for microarray analysis that utilizes machine vision technology and a variety of quality control parameters.microarray analysis, machine visionSCR_002178(ImaGene, RRID:SCR_002178)listed by: OMICtoolsLast checked upOMICS_00841
GlideResource, software resource, software application, simulation softwareSoftware package which approximates a complete search of the conformational, orientational, and positional space of the ligand in a given receptor. Used in drug development for predicting protein ligand binding modes and ranking ligands via high throughput virtual screening.ligand, receptor, docking, computation, virtual, screening, drug, discoverySCR_000187(Glide, RRID:SCR_000187)Schrodinger listed by: OMICtools, works_with: LigprepPMID:18428795Last checked upOMICS_01601
Mutation SurveyorResource, software resource, software application, sequence analysis software, data analysis software, data processing softwareSoftware for DNA sequencing analysis that integates with Sanger Sequencing files generated by Applied Biosystems Genetic Analyzers, MegaBACE, and Beckman CEQ electrophoresis systems. It can be used to find single nucleotide polymorphisms (SNPs), insertions and deletions (INDELS), and somatic mutations in direct sequencing, PCR sequencing, mitochondrial DNA sequencing, and resequencing projects.dna, sequencing, dna-seq, sanger sequencing, sequence analysis softwareSCR_001247(Mutation Surveyor, RRID:SCR_001247)listed by: OMICtoolsLast checked downOMICS_01816Mutation Surveyor software version 5.0http://www.softgenetics.com/mutationSurveyor.html
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