Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

  • Register
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.


Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Preparing word cloud



Type in a keyword to search

Filter by last modified time
See new records

Current Facets and Filters

  • status:new (filter)
  • Availability:Available for download (facet)
  • Website Status : Ascending


Sort alphabetically | Sort by count

Recent searches

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

8 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
TIGSResource, workflow, narrative resource, service resource, training material, storage service resource, data repository, data or information resourceRepository to share analysis procedure, data and help readers or reviewers to know more detail of this work, reproduce or make use of results they are interested in.Share, analysis, procedure, data, tumor, immunogenicitySCR_017565(TIGS, RRID:SCR_017565)submitted by: Resource Identification PortalLast checked up
MIITRA atlasResource, atlas, data or information resourceAtlas for studies of older adult brain. Includes T1-weighted template of older adult brain and tissue probability maps. Exhibits high image sharpness, provides higher inter-subject spatial normalization accuracy compared to other standardized templates and similar normalization accuracy to well-constructed study-specific templates.Older, adult, brain, tissue, probability, map, standardized, templateSCR_017566(MIITRA atlas, RRID:SCR_017566)NIAlisted by: NeuroImaging Tools and Resources Collaboratory (NITRC)Last checked up
HomoeologPrimerResource, software resource, software applicationSoftware tool as script used to design primers for homoeologs, to amplify either homoeolog specific or all homoeologs.Design, primer, homoeolog, amplifySCR_017559(HomoeologPrimer, RRID:SCR_017559)Last checked up
parSMURFResource, software resource, software application, data processing softwareOpen source software package as high performance computing imbalance aware machine learning tool for genome wide detection of pathogenic variants.High, performance, computing, imbalance, aware, machine, learning, genome, wide, detection, pathogenic, variantSCR_017560(parSMURF, RRID:SCR_017560)Last checked up
ExonerateTransferAnnotationResource, software resource, software application, data processing softwareSoftware tool as pipeline to make anntotations using cDNA and CDS sequences.Exonerate, transfer, annotation, cDNA, CDS, sequence, pipeline, geneSCR_017557(ExonerateTransferAnnotation, RRID:SCR_017557)uses: ExonerateLast checked up
vbSPTResource, software resource, software application, data analysis software, data processing softwareSoftware package for analysis of single particle diffusion trajectories, where diffusion constants switch randomly according to Markov process. Analytical tool to combine information from thousands of short single-molecule trajectories of intracellularly diffusing proteins. Has ability to learn number of diffusive states directly from data, in addition to model parameters such as transition rates and diffusion constants.Analysis, single, particle, diffusion, trajectory, Markov, short, molecule, intracellularly, protein, data, transition, stateSCR_017554(vbSPT, RRID:SCR_017554)PMID:23396281Last checked up
Gsnap2AugustusResource, software resource, software application, simulation softwareSoftware tool to generate hints for Augustus in ab initio gene prediction using 2 step mapping by Gsnap.Generate, hint, Augustus, gene, prediction, mapping, GsnapSCR_017555(Gsnap2Augustus, RRID:SCR_017555)uses: GSNAP, works_with: AugustusLast checked up
AutoEVMResource, software resource, software application, data processing softwareSoftware tool as Autorun Evidence Modeler. Requires EVidenceModeler (aka EVM) software which combines ab into gene predictions and protein and transcript alignments into weighted consensus gene structures.Autorun, Evidence, Modeler, gene, prediction, protein, transcript, elignment, weighted, gene, structureSCR_017556(AutoEVM, RRID:SCR_017556)Last checked up
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.