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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

Physical Resource or Software Tool Software

11 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
ZAPLOResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016.gene, genetic, genomic, linux, unix, solarisSCR_009426(ZAPLO, RRID:SCR_009426)listed by: Genetic Analysis SoftwareLast checked downnlx_154692
LDAResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium.gene, genetic, genomic, java, ms-windows, linux, macosSCR_007527(LDA, RRID:SCR_007527)listed by: Genetic Analysis SoftwareLast checked downnlx_154088
UNPHASEDResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A suite of programs for association analysis of multilocus haplotypes from unphased genotype data. These include TDTPHASE for case-parent trios, COCAPHASE for case/control data, QTPHASE for quantitative traits in unrelateds, PDTPHASE for general pedigrees, and QPDTPHASE for quantitative traits in general pedigrees. Features include global and individual haplotype tests, main effects and conditional tests, grouping of rare haplotypes, pairwise comparisons of haplotype risk, flexible permutation procedures and calculation of LD measures.gene, genetic, genomic, c++, java, unix, solaris, linux, ms-windowsSCR_009056(UNPHASED, RRID:SCR_009056)listed by: Genetic Analysis SoftwarePMID:10739137Last checked downnlx_154037http://www.mrc-bsu.cam.ac.uk/personal/frank/software/unphased/
HELIXTREEResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016.gene, genetic, genomic, c++, ms-windows, linux, macos xSCR_009067(HELIXTREE, RRID:SCR_009067)listed by: Genetic Analysis SoftwareLast checked downnlx_154059http://www.goldenhelix.com/SNP_Variation/HelixTree
GENEPOOLResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that provides analysis tools for the detection of shifts in relative allele frequency between pooled genomic DNA from cases and controls using SNP-based genotyping microarrays. GenePool supports genotyping platforms from Affymetrix and Illumina.gene, genetic, genomic, c/c++/perl, linux, macos, (should compile on most unix systems with gcc)SCR_009087(GENEPOOL, RRID:SCR_009087)listed by: Genetic Analysis SoftwareLast checked downnlx_154104
FINESSEResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application to incorporate regressive models into the VITESSE likelihood engine.gene, genetic, genomic, linux, unix, solarisSCR_009100(FINESSE, RRID:SCR_009100)listed by: Genetic Analysis SoftwareLast checked downnlx_154193
GENOMIZERResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A platform independent Java program for the analysis of genome wide association experiments. (entry from Genetic Analysis Software).gene, genetic, genomic, java, ms-windows, linuxSCR_009127(GENOMIZER, RRID:SCR_009127)listed by: Genetic Analysis SoftwareLast checked downnlx_154349http://www.ikmb.uni-kiel.de/genomizer/
BLOCKResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that performs general pedigree analysis on a general pedigree with any number of loops. It also allows users to perform two-point linkage analysis on a general pedigree with an arbitrary number of alleles.gene, genetic, genomic, ms-dos, linux, unix, solaris, irix 64, aix 3.2.5, dec alphaSCR_009133(BLOCK, RRID:SCR_009133)listed by: Genetic Analysis SoftwareLast checked downnlx_154247
EAGLETResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software package that provides a number of improved statistics for detecting linkage and estimating trait location. EAGLET uses multiple subsamples of dense SNP data to detect linkage with increased power, and to construct sharp 95% confidence intervals for the true trait location.gene, genetic, genomic, perl, c, linux, macosSCR_009166(EAGLET, RRID:SCR_009166)listed by: Genetic Analysis SoftwareLast checked downnlx_154288
GEMSResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for fitting Genetic Epidemiology Models by running stochastic simulation in relation to disease dynamics.gene, genetic, genomic, unix, (dec-alpha), linuxSCR_009188(GEMS, RRID:SCR_009188)listed by: Genetic Analysis SoftwareLast checked downnlx_154327http://statgen.genomecenter.howard.edu/gems.htm
GENECOUNTINGResource, software resource, software applicationTHIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for gene-counting for haplotype analysis with permutation tests for global association and specific haplotypes, accounting for missing data.gene, genetic, genomic, c, ms-windows, unix, solaris, linuxSCR_009189(GENECOUNTING, RRID:SCR_009189)listed by: Genetic Analysis SoftwarePMID:12490459Last checked downnlx_154329http://www.mrc-epid.cam.ac.uk/Personal/jinghua.zhao/software/
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