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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Jul 13, 2019)

Physical Resource or Software Tool Software

16,669 Results - per page

Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
Murdoch University; Perth; AustraliaResource, university, institutionSCR_011037(Murdoch University; Perth; Australia, RRID:SCR_011037)Last checked upnlx_11001
Ramapo College; New Jersey; USAResource, university, institutionSCR_011490(Ramapo College; New Jersey; USA, RRID:SCR_011490)Last checked upnlx_97742
A5Resource, software resourceA pipeline for assembling DNA sequence data generated on the Illumina sequencing platform.SCR_013068(A5, RRID:SCR_013068)listed by: OMICtoolsLast checked upOMICS_00005
NOVA BiologicsResource, material resource, reagent supplier, commercial organization, antibody supplierAn Antibody supplierSCR_005985(NOVA Biologics, RRID:SCR_005985)Last checked upnlx_152422
Time Event OntologyResource, ontology, data or information resource, controlled vocabularyOntology for representing events, time, and their relationships.owlSCR_000310(Time Event Ontology, RRID:SCR_000310)listed by: BioPortalLast checked upnlx_157610
Institute for Advanced BiosciencesResource, organization portal, data or information resource, portal, databaseThe Institute for Advanced Biosciences, Keio University, is an academic research institute pioneering the new life science field of Systems Biology, using both experimental and computational biology. There are several groups working in collaboration, focusing mainly on genome biology and engineering, genome design and synthetic biology, metabolic engineering, proteomics, metabolomics, RNA biology, bioinformatics and computational biology. Using cutting-edge technologies, intracellular components can be analyzed comprehensively to construct computer simulation models that can find numerous applications in fields such as biomedical, environmental, and agricultural science. Experimental and computational facilities are located in Tsuruoka, Yamagata prefecture, in northern Japan while the SFC campus, in the Tokyo area, hosts the bioinformatics laboratory and most undergraduate curricular activities. IAB has successfully attracted very significant funding for multiple research projects from major funding organizations including the New Energy and Industrial Technology Development Organization (NEDO) (2002-2006), for bioprocesses and cell modeling, the Ministry of Education, Culture, Sports, Science and Technology (MEXT) and its COE network, for biosimulation and systems biology (2003-2008), the Japan Science and Technology Agency (CREST, 2004-2009) for simulation and systems biology, the Ministry of Health, for cancer biology (2005), as well as from Yamagata prefecture and Tsuruoka city, 2001-2006 and 2006-2011). Over the past few years, IAB scientists have accumulated several awards including the 1st prize during the 5th Japan Biotechnology Business Competition (2005), the Minister of State for Science and Technology Policy award in recognition for industry-academia-government collaboration performance (2004), the IBM Shared University Research Award (2003), and the Nihon Kogyo Shimbunsha Award (2003) during the 17th Leading-edge Technology for Originality and Creativity. Sponsor. This study was supported by a grant from the Global COE Program entitled, Human Metabolomic Systems Biology and by a Grant-in-Aid for Scientific Research on Priority Areas Systems Genomes and on Lifesurveyor from the Ministry of Education, Culture, Sports, Science and Technology of Japan as well as research funds from the Yamagata prefectural government and the City of Tsuruoka.SCR_008526(Institute for Advanced Biosciences, RRID:SCR_008526)Last checked downnif-0000-30595
GD Graphics LibraryResource, software resource, data or information resource, databaseGD library is an open source code library for the dynamic creation of images by programmers. GD is written in C, and wrappers are available for Perl, PHP and other languages. GD creates PNG, JPEG and GIF images, among other formats. GD is commonly used to generate charts, graphics, thumbnails, and most anything else, on the fly. While not restricted to use on the web, the most common applications of GD involve website development. gd is a graphics library. It allows your code to quickly draw images complete with lines, arcs, text, multiple colors, cut and paste from other images, and flood fills, and write out the result as a PNG or JPEG file. This is particularly useful in World Wide Web applications, where PNG and JPEG are two of the formats accepted for inline images by most browsers. gd is not a paint program. If you are looking for a paint program, you are looking in the wrong place. If you are not a programmer, you are looking in the wrong place, unless you are installing a required library in order to run an application. gd does not provide for every possible desirable graphics operation. It is not necessary or desirable for gd to become a kitchen-sink graphics package, but version 2.0 does include most frequently requested features, including both truecolor and palette images, resampling (smooth resizing of truecolor images) and so forth. What if I want to use another programming language? Not all of these tools are necessarily up to date and fully compatible with 2.0.33. PHP A variant of gd 2.x is included in PHP 4.3.0. It is also possible to patch PHP 4.2.3 for use with gd 2.0.33; see the gd home page for a link to that information. It would be a Good Idea to merge all of the things that are better in mainstream gd and all of the things that are better in PHP gd at some point in the near future. Perl gd can also be used from Perl, courtesy of Lincoln Stein''s library, which uses gd as the basis for a set of Perl 5.x classes. Highly recommended. OCaml gd can be used from OCaml, thanks to Matt Gushee''s GD4O project. Tcl gd can be used from Tcl with John Ellson''s Gdtclft dynamically loaded extension package. Pascal Pascal enthusiasts should look into the freepascal project, a free Pascal compiler that includes gd support. REXX A gd interface for the REXX language is available. Any Language The fly interpreter performs gd operations specified in a text file. You can output the desired commands to a simple text file from whatever scripting language you prefer to use, then invoke the interpreter.SCR_008529(GD Graphics Library, RRID:SCR_008529)Last checked downnif-0000-30599
York University; Ontario; CanadaResource, university, institutionSCR_006670(York University; Ontario; Canada, RRID:SCR_006670)Last checked downnlx_18471
CEASResource, software resourceIntegrates many useful tools to simplify ChIP-chip analysis for biologists.SCR_010946(CEAS, RRID:SCR_010946)listed by: OMICtoolsLast checked upOMICS_00802
RACERResource, software resourceA software program for correcting errors in sequencing data.SCR_011852(RACER, RRID:SCR_011852)listed by: OMICtoolsLast checked upOMICS_01108
Lab VisionResource, material resource, reagent supplier, commercial organization, antibody supplierAn Antibody supplierSCR_013436(Lab Vision, RRID:SCR_013436)Last checked upnlx_152395
StemgentResource, material resource, reagent supplier, commercial organization, antibody supplierAn Antibody supplierSCR_013637(Stemgent, RRID:SCR_013637)Last checked upnlx_152469
University of New South Wales; New South Wales; AustraliaResource, university, institutionSCR_006094(University of New South Wales; New South Wales; Australia, RRID:SCR_006094)Last checked upnlx_88819
HAP 1Resource, software resource, software applicationSoftware application (entry from Genetic Analysis Software)gene, genetic, genomicSCR_000837(HAP 1, RRID:SCR_000837)listed by: Genetic Analysis SoftwareLast checked downnlx_154371
University of Calabria; Cosenza; ItalyResource, university, institutionSCR_011615(University of Calabria; Cosenza; Italy, RRID:SCR_011615)Last checked upnlx_25536
Speed BioSystemsResource, biomaterial supply resource, material resourceCommercial antibody supplier based in Maryland.antibody supplier, maryland, commercialSCR_001673(Speed BioSystems, RRID:SCR_001673)Last checked upnlx_152465
Arthritis research campaignResource, private granting agency research campaign, RRID:SCR_011097)Last checked downnlx_33729
realSFSResource, software resource, software application, data analysis software, data processing softwareSoftware program used to estimate allele frequency and SNP calling.allele frequency estimation, snp callingSCR_002493(realSFS, RRID:SCR_002493)listed by: OMICtoolsLast checked upOMICS_00071
SHRECResource, software resourceA bioinformatics tool for error correction of HTS read data.SCR_013009(SHREC, RRID:SCR_013009)SourceForge listed by: OMICtoolsLast checked upOMICS_01110
Amphibian Gross Anatomy OntologyResource, ontology, data or information resource, controlled vocabularyA structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.oboSCR_010291(Amphibian Gross Anatomy Ontology, RRID:SCR_010291)listed by: BioPortalLast checked downnlx_157316
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