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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

(last updated: Oct 12, 2019)

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Resource NameResource TypeDescriptionKeywordsResource IDProper CitationParent OrganizationRelated ConditionFunding AgencyRelationReferenceWebsite StatusAlternate IDsAlternate URLsOld URLs
IPD - Immuno Polymorphism DatabaseResource, data or information resource, databaseA set of specialist databases related to the study of polymorphic genes in the immune system. The IPD project works with specialist groups or nomenclature committees who provide and curate individual sections before they are submitted to IPD for online publication. The IPD project stores all the data in a set of related databases. IPD currently consists of four databases: * IPD-KIR, contains the allelic sequences of Killer-cell Immunoglobulin-like Receptors, * IPD-MHC, is a database of sequences of the Major Histocompatibility Complex of different species; * IPD-human platelet antigens, alloantigens expressed only on platelets and * IPD-ESTDAB, which provides access to the European Searchable Tumour cell-line database, a cell bank of immunologically characterized melanoma cell lines.polymorphic gene, immune system, gene, gold standardSCR_003004(IPD - Immuno Polymorphism Database, RRID:SCR_003004)European Bioinformatics Institute European Union, NCIReferences (3)Last checked upnif-0000-03038
GenePaintResource, atlas, expression atlas, data or information resource, reference atlas, databaseDigital atlas of gene expression patterns in developing and adult mouse. Several reference atlases are also available through this site. Expression patterns are determined by non-radioactive in situ hybridization on serial tissue sections. Sections are available from several developmental ages: E10.5, E14.5 (whole embryos), E15.5, P7 and P56 (brains only). To retrieve expression patterns, search by gene name, site of expression, GenBank accession number or sequence homology. For viewing expression patterns, GenePaint.org features virtual microscope tool that enables zooming into images down to cellular resolution.gene expression, adult mouse, annotated, c57bl6, mouse, mouse embryo, mrna, non radioactive in situ hybridization, light microscopy, molecular neuroanatomy resource, in situ hybridization, embryonic, postnatal, adult, brain, head, annotation, rna probe, sequence, anatomical structureSCR_003015(GenePaint, RRID:SCR_003015)Max Planck Institute for Biophysical Chemistry; Gottingen; Germany BMBF, Burroughs Wellcome Fund, European Union, Max Planck Society, Merck Genome Research Institute, NINDS, Romansky EndowmentReferences (2)Last checked upnif-0000-00009, SCR_017526
EPILEPSIE databaseResource, data or information resource, databaseA comprehensive database for human surface and intracranial EEG data that is suitable for a broad range of applications e.g. of time series analyses of brain activity. Currently, the EU database contains annotated EEG datasets from more than 200 patients with epilepsy, 50 of them with intracranial recordings with up to 122 channels. Each dataset provides EEG data for a continuous recording time of at least 96 hours (4 days) at a sample rate of up to 2500 Hz. Clinical patient information and MR imaging data supplement the EEG data. The total duration of EEG recordings included execeeds 30000 hours. The database is composed of different modalities: Binary files with EEG recording / MR imaging data and Relational database for supplementary meta data.seizure, electroencephalography, mri, eeg recording, metadata, intracranial, surface, time series analyses, brain activity, brain, clinical, image collectionSCR_003179(EPILEPSIE database, RRID:SCR_003179)University of Freiburg; Baden-Wurttemberg; Germany EpilepsyBMBF, European Union, Excellence Initiative of the German Federal and State Governments, German Science Foundationlisted by: NeuroImaging Tools and Resources Collaboratory (NITRC)PMID:22738131Last checked upnlx_156892http://www.nitrc.org/projects/epilepsiaedb http://epilepsy-database.eu/project/ http://www.epilepsiae.eu http://epilepsy-database.eu
MUGEN Mouse DatabaseResource, organism supplier, database, biomaterial supply resource, cell repository, material resource, data or information resourceMUGEN Mouse Database (MMdb) is a virtual and fully searchable repository of murine models of immune processes and immunological diseases. MMdb is being developed within the context of the MUGEN network of Excellence, a consortium of 21 leading research institutes and universities, and currently holds all mutant mouse models that were developed within the consortium. Its primary aim is to enable information exchange between participating institutions on mouse strain characteristics and availability. More importantly, it aims to create a mouse-centric international forum on modelling of immunological diseases and pave the way to systems biology of the mouse by correlating various genotypic and phenotypic characteristics. The basic categorization of models is based on three major research application categories: * Model of Human Disease * Model of Immune Processes * Transgenic Tool Mutant strains carry detailed information on affected gene(s), mutant alleles and genetic background (DNA origin, targeted, host and backcrossing background). Each gene/transgene index also includes IDs and direct links to Ensembl (EBI??s genome browser), ArrayExpress (providing expression profiles), Eurexpress II (for embryonic expression patterns) and NCBI??s Entrez Gene database. Phenotypic description is standardized and hierarchically structured, based on MGI??s mammalian phenotypic ontology terms, but also includes relevant images and references. Since version 2.1.0 MMdb is also utilizing PATO. Availability (in the form of live mice, cryopreserved embryos or sperm, as well as ES cells) is clearly indicated, along with handling and genotyping details (in the form of documents or hyperlinks) and all relevant contact information (including EMMA and JAX hyperlinks where available).murine model, immune process, immunological disease, mutant, mouse model, gene, phenotype, transgenic, genotype, allele, phenotype, transgene, live mouse, embryo, sperm, embryonic stem cellSCR_003243(MUGEN Mouse Database, RRID:SCR_003243)BSRC Al. Fleming; East Attica; Greece Immunological diseaseCASIMR, European Unionlisted by: One Mind Biospecimen Bank ListingLast checked upnif-0000-03171
Brede DatabaseResource, data or information resource, databaseA database of human data from functional neuroimaging scientific articles containing Talairach coordinates that provides data for novel information retrieval techniques and automated meta-analyses. Each article in this database is identified by a unique number: A WOBIB. Some of the structure of the Brede database is similar to the structure of the BrainMap database (Research Imaging Center, San Antonio). The database is inspired by the hierarchical structure of BrainMap with scientific articles (bib structures) on the highest level containing one or more experiments (exp structure, corresponding to a contrast in general linear model analyses), these in turn comprising one or more locations (loc structures). The information on the bib level (author, title, ...) is setup automatically from PubMed while the rest of the information is entered manually in a Matlab graphical user interface. On the loc level this includes the 3D stereotactic coordinates in either Talairach or MNI space, the brain area (functional, anatomical or cytoarchitectonic area) and magnitude values such as Z-score and P-value. On the exp level information such as modality, scanner and behavioral domain are recorded with external components (such as face recognition or kinetic boundaries) organized in a directed graph and marked up with Medical Subject Headings (MeSH) where possible. The database is distributed as part of the Brede neuroinformatics toolbox (hendrix.imm.dtu.dk/software/brede/) which also provides the functions to manipulate and analyze the data. The Brede Toolbox is a program package primarily written in Matlab. As of 2006/11, 186 papers with 586 experiments.neuroinformatics, functional neuroimaging, talairach, mni, brain, fmri, neuroimaging, matlab, pet, positron emission tomography, functional magnetic resonance imaging, multichannel electroencephalography, eeg, magnetoencephalography, near infrared spectroscopic imaging, single photon emission computed tomography, mri, coordinate, brain function, brain region, ontologySCR_003327(Brede Database, RRID:SCR_003327)Technical University of Denmark; Lyngby; Denmark European Union, Project MAPAWAMOrelated to: Brede Wiki, Brede Toolbox, Brede Toolbox, Brede Wiki, brainmap.org, Integrated Manually Extracted Annotation, used by: NIF Data FederationReferences (2)Last checked upnif-0000-00064
PROSITEResource, data analysis service, production service resource, analysis service resource, database, service resource, data or information resourceDatabase of protein families and domains that is based on the observation that, while there is a huge number of different proteins, most of them can be grouped, on the basis of similarities in their sequences, into a limited number of families. Proteins or protein domains belonging to a particular family generally share functional attributes and are derived from a common ancestor. It is complemented by ProRule, a collection of rules based on profiles and patterns, which increases the discriminatory power of profiles and patterns by providing additional information about functionally and/or structurally critical amino acids. ScanProsite finds matches of your protein sequences to PROSITE signatures. PROSITE currently contains patterns and profiles specific for more than a thousand protein families or domains. Each of these signatures comes with documentation providing background information on the structure and function of these proteins. The database is available via FTP.protein domain, protein family, functional site, protein, structure, function, pattern, profileSCR_003457(PROSITE, RRID:SCR_003457)SIB Swiss Institute of Bioinformatics European Union, FNS, Swiss Federal government through the Federal Office of Education and Sciencelisted by: OMICtoolsReferences (3)Last checked upnif-0000-03351, OMICS_01699http://www.expasy.org/prosite, http://www.expasy.ch/prosite/
DTU Center for Biological Sequence AnalysisResource, topical portal, data access protocol, production service resource, analysis service resource, training resource, data analysis service, data set, web service, service resource, portal, software resource, data or information resourceThe Center for Biological Sequence Analysis of the Technical University of Denmark conducts basic research in the field of bioinformatics and systems biology and directs its research primarily towards topics related to the elucidation of the functional aspects of complex biological mechanisms. A large number of computational methods have been produced, which are offered to others via WWW servers. Several data sets are also available. The center also has experimental efforts in gene expression analysis using DNA chips and data generation in relation to the physical and structural properties of DNA. The on-line prediction services at CBS are available as interactive input forms. Most of the servers are also available as stand-alone software packages with the same functionality. In addition, for some servers, programmatic access is provided in the form of SOAP-based Web Services. The center also educates engineering students in biotechnology and systems biology and offers a wide range of courses in bioinformatics, systems biology, human health, microbiology and nutrigenomics.nucleotide, sequence, amino acid, dna, microarray, molecule, immunology, protein function, protein structure, protein, post-translational, whole genome, sequence analysisSCR_003590(DTU Center for Biological Sequence Analysis, RRID:SCR_003590)Technical University of Denmark; Lyngby; Denmark Danish Center for Scientific Computing, Danish National Research Foundation, Danish Research Councils, European Union, NIH, Novo Nordisk Foundation, Villum Kann Rasmussen FoundationLast checked upnlx_12329
EuroBioBankResource, biomaterial supply resource, tissue bank, data set, cell repository, material resource, data or information resourceThe EuroBioBank network is the first operating network of biobanks in Europe providing human DNA, cell and tissue samples as a service to the scientific community conducting research on rare diseases. It is the only network dedicated to rare disease research in Europe. By creating a critical mass of collections and facilitating the exchange of biological material, the EuroBioBank network helps accelerate research on these diseases. * Over 440,000 samples are available across the network and can be requested via the online catalogue. Approximately 13,000 samples are collected each year and 7,000 samples distributed in Europe and beyond. The biological samples are obtained from patients affected by rare diseases, including rare neuromuscular disorders. * The EuroBioBank Network is currently composed of 18 members, of which 16 biobanks from 8 European countries (France, Germany, Hungary, Italy, Malta, Slovenia, Spain and the United-Kingdom) as well as Israel and Canada. Goals * Identify and localize biological material of interest to researchers * Build a critical mass of rare disease sample collections * Distribute high quality material and associated data to users * Promote best-practice guidelines for biobanking activities * Disseminate knowledge and know-how to the scientific community through training courses * Enhance collaboration with the medical and scientific community in the field of rare diseases EuroBioBank acts as a clearing house or virtual bank, with all samples listed in the central online catalogue remaining in the possession of the member biobanks, where they are located and can be requested. The network was established by patients and researchers to facilitate research on rare diseases by guaranteeing quick and easy access to samples via an online catalogue. The catalogue lists the samples available throughout the EuroBioBank network by type of biomaterial. A search engine enables a search by disease or by bank contact. Once a sample has been located in the catalogue, it can be requested by email. Therefore, the biological material is exchanged faster. If a sample does not appear in the EuroBioBank catalogue, help can be provided to further search it at: eurobiobank (at) telethon.it Funding and Collaboration Originally funded by the EC between 2003-2006, the EuroBioBank received further EC support between 2007-2011 within the European Network of Excellence TREAT-NMD (FP6), which covered the cost sustained by Eurordis for the network coordination and website hosting. Each biobank of the network is financed by its own Institution or charitable organization. As of January 2012, the Fondazione Telethon provides the administrative support for coordinating the EuroBioBank network and hosting the website.rare disease, catalog, cell, dna, tissue, myoblast, fibroblast, myocyte, cardiomyocyte, epithelial cell, rare disease, rare neuromuscular disorder, myasthenia gravis, inflammatory myopathy, glycogen storage disease, mitochondrial myopathy, muscular dystrophy, malignant hyperthermia, congenital myopathy, myotonic disorder, duchenne dystrophySCR_003599(EuroBioBank, RRID:SCR_003599)Telethon Foundation Rare disease, Rare neuromuscular disorder, Myasthenia gravis, Inflammatory myopathy, Glycogen storage disease, Mitochondrial myopathy, Muscular dystrophy, Malignant hyperthermia, Congenital myopathy, Myotonic disorder, Duchenne dystrophy, Etc.European Union, Treat-NMDrelated to: Treat-NMD, Movement Disorders Biobank, listed by: One Mind Biospecimen Bank Listing, affiliated with: Telethon Network of Genetic BiobanksLast checked upnlx_12526
Alzheimer EuropeResource, disease-related portal, topical portal, portal, data or information resourceA non-governmental organization aimed at raising awareness of all forms of dementia by creating a common European platform through co-ordination and co-operation between Alzheimer organizations throughout Europe. Alzheimer Europe is also a source of information on all aspects of dementia.SCR_003802(Alzheimer Europe, RRID:SCR_003802)Dementia, Alzheimer's diseaseEuropean Unionrelated to: Greek Association of Alzheimers Disease and Related Disorders, PharmaCog, EMIFLast checked upnlx_158313
EURORDISResource, topical portal, training resource, portal, data or information resourceEURORDIS is a non-governmental patient-driven alliance of patient organizations and individuals active in the field of rare diseases, dedicated to improving the quality of life of all people living with rare diseases in Europe. It is a not-for-profit organization and represents more than 479 rare disease organizations in 45 different countries (of which 25 are EU Member States), covering more than 4,000 rare diseases. It is therefore the voice of the 30 million patients affected by rare diseases throughout Europe. EURORDIS aims at improving the quality of life of people living with rare diseases in Europe through advocacy at the European level, support for research and drug development, networking patient groups, raising awareness and other actions designed to fight against the impact of rare diseases on the lives of patients and family. EURORDIS' training programs and resources are designed to strengthen the capacity of rare disease patients' representatives. Training empowers patients' representatives to advocate effectively for rare diseases at both the local and EU level. Key issues affecting patients of Rare Diseases on which we actively work: * Sustaining rare diseases as an EU public health priority * Making Rare Diseases A Public Health Priority In All Member States * Rare Diseases: An International Public Health Priority * Improving Access To Orphan Drugs * Improving Access To Quality Care * Promoting cross-border healthcare and patient mobility * Bridging Patients And Research * Genetic testing and newborn screeningSCR_003814(EURORDIS, RRID:SCR_003814)corporate foundations, European Union, French Muscular Dystrophy Association, health industry, membersLast checked upnlx_143535
AddNeuroMedResource, organization portal, database, portal, consortium, data or information resourceProject portal for a cross European study designed to find biomarkers, or tests, for Alzheimer's disease. Its objectives are to produce and improve experimental models of Alzheimer's for biomarker discovery and to identify a biomarker for Alzheimer's disease suitable for diagnosis, prediction, and monitoring disease progression for use in clinical trials and in clinical practice. The baseline dataset database was scheduled to be completed and locked in 2008 and become available to researchers by 2009. Requests to access the data will be reviewed by the scientific projects committee.biomarker, test, diagnostic, device, clinical, animal model, clinical trial, pre-clinical, consortium, disease progression, mri, proteomics, genomics, lipidomics, neuroimaging, mouse model, rat model, drosophila modelSCR_003819(AddNeuroMed, RRID:SCR_003819) King's College London; London; United Kingdom , Innovative Medicines Initiative EFPIA, European Unionrelated to: Innovative Medicines Initiative, University of Kuopio, Kuopio, Finland, University of Perugia, Perugia, Italy, Aristotle University of Thessaloniki, Thessaloniki, Greece, King's College London, London, United Kingdom, University of Lodz, Lodz, Poland, listed by: Consortia-pediaLast checked upnlx_158122
ProteomeXchangeResource, organization portal, database, consortium, catalog, service resource, portal, storage service resource, data repository, data or information resourceA data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas.consortium, database, proteomics, MS proteomics, protein, mass spectrometrySCR_004055(ProteomeXchange, RRID:SCR_004055)European Bioinformatics Institute European Unionrelated to: PRIDE, PeptideAtlas, SIB Swiss Institute of Bioinformatics, massIVE, European Bioinformatics Institute, uses: PRIDE, PeptideAtlas, affiliated with: Omics Discovery IndexLast checked upnlx_158620http://proteomecentral.proteomexchange.org
PENTA-IDResource, disease-related portal, topical portal, training resource, portal, clinical trial, data or information resourceA Level 1 network for pediatric infectious disease in Europe recognized by the European networks of paediatric research at the European Medicines Agency (EnprEMA) whose activities vary from clinical trials, to cohort studies and training. It is currently developing a portfolio of clinical trials in antimicrobials in children, including antibiotics, antivirals and antifungals.clinical trial, cohort study, pediatric, young human, child, antimicrobial, antibiotic, antiviral, antifungalSCR_004092(PENTA-ID, RRID:SCR_004092)HIV, Infectious disease, AIDS, Tuberculosis, Drug resistanceEuropean Unionrelated to: EMIFLast checked upnlx_158553
OECI - Tubafrost: The European Human Frozen Tissue BankResource, database, biomaterial supply resource, tissue bank, cell repository, material resource, data or information resourceIn this web site you will find the central European database of OECI-TuBaFrost collecting the information of biobanks or in the project support environment on human material; i.e., frozen tumor tissue specimens, pathology blocks, blood samples in different forms, cell lines, Tissue Micro Arrays, etc. Our goal is by centralizing the tumor tissues information to facilitate the search of doctors / researchers for tumor materials, which they need for their cancer research there with facilitating cancer research. OECI members only can participate in the OECI-TuBaFrost exchange platform, or those introduced by an OECI member. We are a group of pathology and research departments as well as bio-bankers in clinical based biobanking based in comprehensive cancer centers or hospitals with a competence in comprehensive cancer care across Europe. Each participating institute is involved in cancer research resulting in innovative procedures, new drugs, improved diagnosis and new insights in disease development. The overall result is better care and treatment for cancer patients. To maximize the scientific value of the human tissue samples, information about the clinical status of the patient in combination with the quality and type of samples is very important. A TuBaFrost electronic database will securely store all this information. Within the closed project supporting environments, the data collected will include: * Diagnosis - identification of the type of cancer * Type of tissue collected - the origin, i.e. breast, skin, colorectal * Quality of tissue collected - collection and storage details The tissue is stored in the hospital where the donor was diagnosed/treated. It stays there until it is used or sent to another hospital or research center within the TuBaFrost group. The electronic database will track samples throughout the network. The tissue is not sold. The exchange of tissue to other hospitals is regulated by a contract, which uses the national regulations of the country supplying the tissue. Tissue samples within the TuBaFrost collection will only be used for research, which has been approved by ethics committees. This ensures that the tissue is only used for the best quality research and only for the specific reasons given to the ethics committee.tumor tissue, blood, cell line, tissue, frozen, block, tissue micro array, tumor, cancer, clinical, clinical dataSCR_004280(OECI - Tubafrost: The European Human Frozen Tissue Bank, RRID:SCR_004280)OECI - Organisation for European Cancer Institutes Tumor, CancerEuropean Unionlisted by: One Mind Biospecimen Bank ListingLast checked upnlx_36384
NASCResource, database, biomaterial supply resource, service resource, storage service resource, material storage repository, material resource, data or information resourceThe Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community. NASC now maintains over 500,000 accessions of Arabidopsis thaliana (and a small number of other related species), including Characterized lines, Mapping populations, and Insertion lines. You may browse or search the catalog. NASC was established in April 1991 as part of the Plant Molecular Biology initiative of the Agricultural and Food Research Council (AFRC). Its activities are coordinated with those of the Arabidopsis Biological Resource Center, (ABRC) based at Ohio State University, USA. This facilitates a unified and efficient service for the research community. The stock centers have a distribution agreement. NASC distributes to Europe and ABRC distributes to North America. Laboratories in other locations may establish their primary affiliation with either center. Stocks include over 200 well-characterized hormone, flowering, biochemical, form mutants and multiple marker lines, many of which were received from Maarten Koornneef. We also stock several hundred form and color mutants as well as 300 ecotypes donated by Professor Kranz. Our total of ecotypes representing a reservoir of natural variation, now stands at ~1300 bulk (original collection) and single seed "purified" lines. For mapping purposes we stock: * 300 recombinant inbred lines derived from a cross between Landsberg erecta and Columbia, donated by Caroline Dean and Clare Lister. * A set of 146 recombinant inbreds produced from a cross between Wassileweskija and W100F and donated by Pablo Scolnik. * A population of Cvi-0 (Cape Verde Islands) x Landsberg erecta lines (162 in total) developed by Maarten Koornneef. * A population of Nd (Niederzenz) x Columbia (100 lines) developed by Eric Holub, Jim Beynon, and Ian Crute (HRI Wellsbourne, UK). * A population generated from a cross between Landsberg and Columbia quartet mutants qrt1-1 and qrt1-2 NASC stocks a large number of T-DNA and transposon insertion lines which can be used for both forward and reverse genetics. Many thanks to all of the researchers who have donated material to NASC. We are always happy to receive new donations. If you would like to donate stocks to NASC, please fill in the donation form and send your seeds to NASC.seed, arabidopsisSCR_004576(NASC, RRID:SCR_004576)University of Nottingham; Nottingham; United Kingdom BBSRC, European Union, University of Nottingham; Nottingham; United Kingdomlisted by: One Mind Biospecimen Bank ListingLast checked upnlx_56885
PDBe - Protein Data Bank in EuropeResource, service resource, data or information resource, data repository, storage service resource, databaseThe European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules.x-ray, nmr, cryo-em, hybrid method, dna, protein, rna, sugar, ligand, virus, compound, fold, enzyme, 3d spatial image, structure, macromolecule, protein-protein interaction, gold standardSCR_004312(PDBe - Protein Data Bank in Europe, RRID:SCR_004312)European Bioinformatics Institute BBSRC, CCP4, European Molecular Biology Laboratory; Heidelberg; Germany, European Union, MRC, NIH, Wellcome Trustrelated to: Research Collaboratory for Structural Bioinformatics Protein Data Bank, DDBJ - DNA Data Bank of Japan, EMDataBank.org: Unified Data Resource for Cryo Electron Microscopy, Worldwide Protein Data Bank , Biological Magnetic Resonance Data Bank, DDBJ - DNA Data Bank of Japan, Worldwide Protein Data Bank , PDBj - Protein Data Bank Japan, Research Collaboratory for Structural Bioinformatics Protein Data Bank, RCSB PDB, listed by: re3data.orgReferences (3)Last checked upnlx_32372
FishBaseResource, topical portal, database, organism-related portal, service resource, portal, storage service resource, image repository, data repository, data or information resourceA global species database and encyclopedia of over 32,800 species and subspecies of fishes that is searchable by common name, genus, species, geography, family, ecosystem, references literature, tools, etc. It links to other, related databases such as the Catalog of Fishes, GenBack, and LarvalBase. It is associated with a partner journal, Acta Ichthyologica et Piscatoria. It is available in English, Greek, Spanish, Portuguese, French, Dutch, Italian, and German. Photo and video submissions are welcome. FishBase 2004 is also available on DVD or CD-ROMs with full information on 28,500 species. It comes together with the FishBase 2000 book and can be ordered for 95 US$ including air-mail.forum, blog, photo, book, image, ichthyologySCR_004376(FishBase, RRID:SCR_004376)European Unionrelated to: Teleost Taxonomy Ontology, Phenoscape Knowledgebase, listed by: re3data.orgLast checked upnlx_39009
MIGHEALTHNET (Migrant Health)Resource, wiki, narrative resource, data or information resourceThe MIGHEALTHNET wiki has been set up to gather information about the health of migrants and ethnic minorities in the United Kingdom. It forms part of the project MIGHEALTHNET, currently being carried out in 16 countries and co-funded by DG SANCO, the Health and Consumer Protection Directorate-General of the European Commission. We invite you to add your contributions to it and to pass on the address of this site to others who may be interested. This website is part of an EU Project that aims to give professionals, policy makers including health authorities, researchers, educators and representatives of migrant and minority groups easy access to a dynamically evolving body of knowledge and a virtual network of expertise. It will stimulate the formation of networks of individuals and organizations concerned with migrant and minority health.SCR_004701(MIGHEALTHNET (Migrant Health), RRID:SCR_004701)Queen Mary University of London; London; United Kingdom European UnionLast checked upnlx_69465
RHEAResource, service resource, data or information resource, data repository, storage service resource, databaseManually annotated reaction database where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest) which provides detailed information about structure, formula and charge. Rhea provides built-in validations that ensure both elemental and charge balance of the reactions. The database has been populated with the reactions found in the Enzyme Commission (EC) list (and in the IntEnz and ENZYME databases), extending it with additional known reactions of biological interest. While the main focus of Rhea is enzyme-catalyzed reactions, other biochemical reactions are also included. Rhea is a manually annotated resource and it provides: stable reaction identifiers for each of its reactions; directionality information if the physiological direction of the reaction is known; the possibility to link several reactions together to form overall reactions; extensive cross-references to other resources including enzyme-catalyzed and other metabolic reactions, such as the EC list (in IntEnz), KEGG, MetaCyc and UniPathway; and chemical substructure and similarity searches on compounds in Rhea.biochemical reaction, reaction, enzyme-catalyzed reaction, spontaneous reaction, enzyme, chemical reaction, gold standardSCR_004713(RHEA, RRID:SCR_004713)SIB Swiss Institute of Bioinformatics EMBL, European Union, Swiss Federal Government SERI, Swiss Initiative in Systems Biology, SystemsX.chrelated to: European Bioinformatics Institute, uses: CHEBI, listed by: re3data.orgPMID:27789701Last checked upnlx_70986
European Bioinformatics InstituteOrganization, organization portal, portal, data or information resourceNon-profit academic organization for research and services in bioinformatics. Provides freely available data from life science experiments, performs basic research in computational biology, and offers user training programme, manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures. Part of EMBL.organization, academic, bioinformatics, research, service, data, computational, biology, training, database, DNA, proteinSCR_004727(European Bioinformatics Institute, RRID:SCR_004727)European Molecular Biology Laboratory BBSRC, EMBL member states, European Union, Industry Programme partners, NIH, UK Research Councils, Wellcome Trustrelated to: AgedBrainSYSBIO, ProteomeXchange, Open PHACTS, RHEA, TraCeR, used by: Blueprint Epigenome, listed by: re3data.orgLast checked upnlx_72386
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