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on page 1 showing 20 out of 16,796 results

Cite this (Bentham OPEN, RRID:SCR_006202)

URL: http://www.benthamscience.com/open/index.htm

Resource Type: Resource, journal article, organization portal, service resource, portal, data or information resource

Publish over 230 plus peer-reviewed open access journals. These free-to-view online journals cover all major disciplines of science, technology, medicine and social sciences. Bentham OPEN offers its ''Complimentary Membership'' to International R & D organizations, institutes and universities. This opportunity will entitle authors from different member institutes to a special discount of 30% in the open access publication fee for submission of articles to Bentham OPEN journals. Additionally, input and contributions from associate institutes would also be recognized and a link to their respective Website would be displayed on the Bentham OPEN membership page. The member institution''s logo will also be published on the same page. Bentham Open Membership provides the following advantages: * Possibility to explore 73 distinct disciplines by means of publishing in 239 open access journals. * Free access to all provides prospects of higher citations. * Author(s) own the copyrights to their published articles. * High standard criteria for peer-review. * Unbound right to read, download or print open access articles. * Access to a range of articles in printed form such as short communications, full length research articles, reviews or conference proceedings. * Simple steps from submission to publication, leading to fast turn-around. * Possibility of archiving published articles. The complimentary membership is valid for a span of one year and upon completion of the prescribed period, it is renewed by mutual interest and agreement. If you find the above mentioned details relevant, then kindly contact us via e-mail at membership_at_benthamscience.org or oa_at_benthamscience.org.

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Cite this ( Genotype-IBD Sharing Test , RRID:SCR_006257)

URL: http://chgr.mc.vanderbilt.edu/page/gist

Resource Type: Resource, software resource, software application, resource

Software package to test if a marker can account in part for the linkage signal in its region. There are two versions of the software: Windows and Linux/Unix.

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Cite this (PatientCrossroads, RRID:SCR_006279)

URL: http://www.patientcrossroads.com/

Resource Type: Resource, patient registry, topical portal, portal, people resource, data or information resource

A trusted third-party gatekeeper of patient data from participants in a rare disease ecosystem, collecting and managing the information in a scalable, cost-effective manner. Each patient registry provides critical disease knowledge which makes that disease easier to study, increasing the probability a treatment can be developed. PatientCrossroads takes a network approach to patient registry programs. Unlike companies that merely sell registry software, we offer a full range of administration, management, and genetic curation services. What does this consolidated, patient-centric approach to patient registries mean? * Patients can more easily find registries and provide their valuable data (including locations of blood and tissue samples as well as reports of diagnoses, disease symptoms, treatment usage, and lifestyle activities) * Patients can be confident in the privacy of their de-identified data and the knowledge that PatientCrossroads does not sell patient data * Researchers and pharmaceutical companies have a larger, more easily accessible pool of potential patients for research studies and clinical trials targeting specific rare diseases * Pharmaceutical companies can collect post-market surveillance data in a more scalable and cost-effective manner * Rare disease advocacy and research foundations can more easily organize their global patient populations for inclusion in trials and studies

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Cite this (Computational Genomics Analysis Tools, RRID:SCR_006390)

URL: http://www.cgat.org/~andreas/documentation/cgat/cgat.html

Resource Type: Resource, software resource, software toolkit

A collection of tools for the computational genomicist written in the python language to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. Please note that the tools are part of a larger code base also including genomics and NGS pipelines. Everyone who uses parts of the CGAT code collection is encouraged to contribute. Contributions can take many forms: bugreports, bugfixes, new scripts and pipelines, documentation, tests, etc. All contributions are welcome.

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Cite this (Biobank Ireland Trust, RRID:SCR_006430)

URL: http://biobankireland.com/

Resource Type: Resource, biomaterial supply resource, material resource, tissue bank, data or information resource

Biobank Ireland Trust promotes the development of an Irish Hospital Biobank Network to coordinate collection of small samples of cancer and normal tissue and coded patient data from those having a cancer operation. This will facilitate international molecular research collaborations, which may help identify the best treatment for each individual patient - personalized medicine. Biobank Ireland is promoting the development of a Hospital Biobank Network throughout the island of Ireland as a bridge between cancer research and care. This new infrastructure will facilitate large national and international translational research collaborations that will raise Ireland''s research profile and benefit those with cancer. Researchers will have online access to samples and to restricted patient data from participating hospitals and an equitable withdrawal process for scientifically and ethically approved projects. Important research results will be explained to the public. Other Objectives: * To facilitate (inter)national translational research collaborations that may lead to new tests and better, less toxic treatments for those with cancer * To enable molecular research on cancer tissue from clinical trials patients identify the best treatment for each individual patient ????????personalized medicine???????? * Researchers will have online access to samples and restricted patient data from participating hospitals, and a fair release process for scientifically and ethically approved projects * Biobank Ireland recognizes the need to have harmonization in biobanking around the world * Important research results will be explained to the public * Biobank Ireland will seek to have the hospital-based Biobank Network funded by government as standard of care

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Cite this (Registry Builder Data Harmonization and Aggregation Tool, RRID:SCR_006559)

URL: http://www.remedyinformatics.com/

Resource Type: Resource, software resource, commercial organization

Software to harmonize the data that you have in different Excel files, databases, repositories, biospecimen applications, etc. and maps it to one common registry. Remedy Informatics' platform aggregates data from multiple sources, harmonizes the data via Ontology, and provides data visualization and pattern recognition and querying tools.

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Cite this (University of Florida DNA and Tissue Bank, RRID:SCR_006581)

URL: http://www.alphaone.ufl.edu/dna_tissue_bank1.html

Resource Type: Resource, biomaterial supply resource, material resource, tissue bank

The Alpha-1 Foundation DNA and Tissue Bank, established in 2000 by the Alpha-1 Foundation, is a repository specifically for medical information (hyperlink to data points) and tissue samples (DNA, plasma, lung/liver) for alpha-1-antitrypsin deficient individuals, their family and friends. The Bank serves the international scientific community. Currently the Bank has the largest collection of DNA in the world for Alpha-1-antitrypsin research studies. The Alpha-1 Foundation has established a Tissue Bank Advisory Committee which includes a wide representation of physicians, ethicists, attorneys, consumers as well as international experts in tissue banking. Collectively this Advisory Committee reviews requests for research. At this time the Bank has over 2400 members who have provided valuable medical and/or tissue samples. For investigators interested in obtaining tissue samples with phenotypes from the Bank, please contact the Alpha-1 Foundation or our research staff at the University of Florida.

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Cite this (University of Florida Molecular Tissue Bank, RRID:SCR_010599)

URL: http://biorepository.pathology.ufl.edu/for-investigators/apply-for-tissue/

Resource Type: Resource, biomaterial supply resource, material resource, tissue bank

Tissue bank that handles human tissue.

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Cite this (Brucellosis Ontology, RRID:SCR_006795)

URL: http://purl.bioontology.org/ontology/IDOBRU

Resource Type: Resource, ontology, data or information resource, controlled vocabulary

A biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.

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Cite this (Rice Kinase Database, RRID:SCR_006990)

URL: http://rkd.ucdavis.edu/interactome.shtml

Resource Type: Resource, data or information resource, database

It was created to host functional genomic information gathered as part of a large NSF funded rice kinase proteomics project. The goal is to integrate disparate data sets into a logical, user friendly format. To accomplish this, they have developed a platform to display user selected functional genomic data on a phylogenetic tree. The RKD also includes an interactive chromosomal map showing the positions of all rice kinases and an interactive protein-protein interaction maps.

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Cite this (Carbon Dioxide Information Analysis Center, RRID:SCR_006999)

URL: http://cdiac.esd.ornl.gov/

Resource Type: Resource, service resource, data set, data repository, storage service resource, data or information resource

The primary climate-change data and information analysis center of the U.S. Department of Energy (DOE) and includes the World Data Center for Atmospheric Trace Gases, serving the climate change-related data and information needs of users worldwide. CDIAC''s data holdings include estimates of carbon dioxide emissions from fossil-fuel consumption and land-use changes; records of atmospheric concentrations of carbon dioxide and other radiatively active trace gases; carbon cycle and terrestrial carbon management datasets and analyses; and global/regional climate data and time series. CDIAC provides scientific and data management support for projects sponsored by a number of agencies, including the AmeriFlux Network, continuous observations of ecosystem level exchanges of CO2, water, energy and momentum at different time scales for sites in the Americas; the Ocean CO2 Data Program of CO2 measurements taken aboard ocean research vessels; DOE-supported FACE experiments, which evaluate plant and ecosystem response to elevated CO2 concentrations; and the HIPPO project, which is analyzing the atmospheric carbon cycle and greenhouse gas concentrations from pole to pole over the Pacific Ocean. For those wishing to contribute data to the CDIAC data collection, review the guide and then contact one of the CDIAC staff members to discuss further data submission plans. Data providers may submit data in a variety of ways including via email, direct deposit to a secure CDIAC File Transfer Protocol (FTP) server, on transfer media (e.g. CD-ROM), or by having CDIAC mirror a location at the investigator''s institution.

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    HDBase

Cite this (HDBase, RRID:SCR_007132)

URL: http://hdbase.org/cgi-bin/welcome.cgi

Resource Type: Resource, disease-related portal, data set, topical portal, portal, data or information resource

A community website for Huntington''s Disease (HD) research that currently contains Y2H and Mass spectrometry protein-protein interaction data centered around the HD protein (huntingtin) and information on therapeutic studies in mouse. Also available are raw Human and Mouse Affymetrix Microarray data. The protein interaction data is from several sources, including interactions curated from the literature by ISB staff, experimentally determined interactions produced by Bob Hughes and colleagues at Prolexys (currently password protected), and interactions reported in a recent publication by Goehler et al from Eric Wanker''s lab. Content areas that may be covered by the site include the following: * Therapeutic studies in mouse, primarily drug screens. * HD mouse models with a focus on timelines of disease progression. * Antibodies used in HD research. * Microarray gene expression studies. * Genes and proteins relevant to HD research. This includes HD itself, the growing list of proteins thought to interact directly or indirectly with huntingtin (Htt), and other genes and proteins implicated in the disease process. * Molecular pathways thought to be involved in the disease process. * Timelines of disease for Mouse models

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    CMKB

Cite this (CMKB, RRID:SCR_007229)

URL: http://cmckb.cellmigration.org

Resource Type: Resource, data or information resource, database

It is a database of keys facts about proteins, families, and complexes involved in cell migration. This ongoing project provides a large amount of automated and curated data, collected from numerous online resources that are updated monthly. These data include names, synonyms, sequence information, summaries, CMC research data, reagents, structures, as well as protein family and complex details. CMKB''s ultimate goal is to create a database that will enable the cell migration community to conveniently access significant information about molecules of interest. This will also serve as a stepping stone to pathway analysis and demonstrate how these molecules coordinate with one another during cell adhesion and movement. Sponsors: This resource is supported by the Cell Migration Consortium.

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Cite this (CardioGenomics, RRID:SCR_007248)

URL: http://cardiogenomica.altervista.org/CARDIOGENOMICS/CardioGenomics%20Homepage.htm

Resource Type: Resource, topical portal, portal, data or information resource

The primary goal of the CardioGenomics PGA is to begin to link genes to structure, function, dysfunction and structural abnormalities of the cardiovascular system caused by clinically relevant genetic and environmental stimuli. The principal biological theme to be pursued is how the transcriptional network of the cardiovascular system responds to genetic and environmental stresses to maintain normal function and structure, and how this network is altered in disease. This PGA will generate a high quality, comprehensive data set for the functional genomics of structural and functional adaptation of the cardiovascular system by integrating expression data from animal models and human tissue samples, mutation screening of candidate genes in patients, and DNA polymorphisms in a well characterized general population. Such a data set will serve as a benchmark for future basic, clinical, and pharmacogenomic studies. Training and education are also a key focus of the CardioGenomics PGA. In addition to ongoing journal clubs and seminars, the PGA will be sponsoring symposia at major conferences, and developing workshops related to the areas of focus of this PGA. Information regarding upcoming events can be found in the Events section of this site, and information about training and education opportunities sponsored by CardioGenomics can be found on the Teaching and Education page. The CardioGenomics project came to a close in 2005. This server, cardiogenomics.med.harvard.edu, remains online in order to continue to distribute data that was generated by investigators under the auspices of the CardioGenomics Program for Genomic Applications (PGA). :Sponsors: This resource is supported by The National Heart, Lung and Blood Institute (NHLBI) of the NIH.

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Cite this (Atlases of the Brain, RRID:SCR_007293)

URL: http://library.med.utah.edu/kw/brain_atlas/

Resource Type: Resource, atlas, training resource, data or information resource

Brain atlas in sagittal, coronal, and axial planes some from myelin stained sections, others from MRI. The structures are outlined and labeled on the zoomable images in the coronal series. The labels can also be used in quiz mode. Designed as part of of program for second year medical students studying neuroanatomy.

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Cite this (Neuroscience Database Gateway, RRID:SCR_007297)

URL: http://ndg.sfn.org/

Resource Type: Resource, topical portal, portal, data or information resource

THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 06, 2013. Resource aimed at promoting awareness and facilitating access to online neuroscience databases.

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Cite this (R/STEPWISE, RRID:SCR_007420)

URL: https://cran.r-project.org/web/packages/stepwise/index.html

Resource Type: Resource, software resource, software application

Software application that is a stepwise approach to identifying recombination breakpoints in a sequence alignment (entry from Genetic Analysis Software)

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Cite this (Mayo Graduate School; Neurobiology of Disease, RRID:SCR_007461)

URL: http://www.mayo.edu/mgs/neuro.html

Resource Type: Resource, graduate program resource, degree granting program, medical school program resource, training resource

A graduate training program that offers an M.D.-Ph.D. Program.

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Cite this (Institute for Advanced Biosciences, RRID:SCR_008526)

URL: http://g2d2.ogic.ca

Resource Type: Resource, organization portal, data or information resource, portal, database

The Institute for Advanced Biosciences, Keio University, is an academic research institute pioneering the new life science field of Systems Biology, using both experimental and computational biology. There are several groups working in collaboration, focusing mainly on genome biology and engineering, genome design and synthetic biology, metabolic engineering, proteomics, metabolomics, RNA biology, bioinformatics and computational biology. Using cutting-edge technologies, intracellular components can be analyzed comprehensively to construct computer simulation models that can find numerous applications in fields such as biomedical, environmental, and agricultural science. Experimental and computational facilities are located in Tsuruoka, Yamagata prefecture, in northern Japan while the SFC campus, in the Tokyo area, hosts the bioinformatics laboratory and most undergraduate curricular activities. IAB has successfully attracted very significant funding for multiple research projects from major funding organizations including the New Energy and Industrial Technology Development Organization (NEDO) (2002-2006), for bioprocesses and cell modeling, the Ministry of Education, Culture, Sports, Science and Technology (MEXT) and its COE network, for biosimulation and systems biology (2003-2008), the Japan Science and Technology Agency (CREST, 2004-2009) for simulation and systems biology, the Ministry of Health, for cancer biology (2005), as well as from Yamagata prefecture and Tsuruoka city, 2001-2006 and 2006-2011). Over the past few years, IAB scientists have accumulated several awards including the 1st prize during the 5th Japan Biotechnology Business Competition (2005), the Minister of State for Science and Technology Policy award in recognition for industry-academia-government collaboration performance (2004), the IBM Shared University Research Award (2003), and the Nihon Kogyo Shimbunsha Award (2003) during the 17th Leading-edge Technology for Originality and Creativity. Sponsor. This study was supported by a grant from the Global COE Program entitled, Human Metabolomic Systems Biology and by a Grant-in-Aid for Scientific Research on Priority Areas Systems Genomes and on Lifesurveyor from the Ministry of Education, Culture, Sports, Science and Technology of Japan as well as research funds from the Yamagata prefectural government and the City of Tsuruoka.

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    ERIC

Cite this (ERIC, RRID:SCR_007644)

URL: http://patricbrc.vbi.vt.edu/portal/portal/patric/IncumbentBRCs?page=eric

Resource Type: Resource, data analysis service, production service resource, analysis service resource, database, service resource, data or information resource

ERIC is a resource of annotated enterobacterial genomes. Information is available and accessed through a open web portal uniting biological data and analysis tools. ERIC contains information on Escherichia, Shigella, Salmonella, Yersinia, and other microorgansims. ERIC has recently been moved over to PATRIC: The PATRIC BRC is now responsible for all bacterial species in the NIAID Category A-C Priority Pathogen lists for biodefense research, and pathogens causing emerging/reemerging infectious diseases. For ERIC users, we understand that the resource was valuable to your work. As such, we will be doing our very best to create a useful PATRIC resource to continue supporting your work. We realize that the transition will cause disruptions. However, it is a priority for us to work with established BRC users and communities to identify and prioritize our transition efforts. We have concentrated on the transfer of genomic data for this initial release. We anticipate adding new data, tools, and website features over the next several months. We look forward to working with you during the next 5 years.

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