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Cite this (Appion Package, RRID:SCR_016734)
URL: http://emg.nysbc.org/redmine/projects/appion/wiki/Appion_Home
Resource Type: Resource, software resource, software application, image processing software, data processing software, image analysis software
Software package for processing and analysis of EM images. Appion is integrated with Leginon data acquisition but can also be used stand-alone after uploading images (either digital or scanned micrographs) or particle stacks using a set of provided tools.Cite this (BISE, RRID:SCR_016774)
URL: https://biii.eu/
Resource Type: Resource, organization portal, database, analysis service resource, production service resource, service resource, portal, software resource, data or information resource
Web platform for bio image analysis. Used to share knowledge between the different communities, to help biologists to find any tool or workflow available for a particular image analysis problem and to find the adequate image processing wording, to help software and algorithm developers to find missing tools (or components), and to help bioimage analyst to identify and edit workflows.Cite this (Chemdraw, RRID:SCR_016768)
URL: http://www.perkinelmer.co.uk/category/chemdraw
Resource Type: Resource, software resource, software application
Software used to draw chemical structure. ChemDraw, along with Chem3D and ChemFinder, is part of the ChemOffice suite of programs and is available for Macintosh and Microsoft Windows.Cite this (CTFFIND, RRID:SCR_016732)
URL: http://grigoriefflab.janelia.org/ctffind4
Resource Type: Resource, software resource, software application, data analysis software, data processing software
Software tool for finding CTFs of electron micrographs. Program used for the estimation of objective lens defocus parameters from transmission electron micrographs. The program CTFFIND3 is an updated version of the program CTFFIND2. For micrographs collected on photographic film and scanned in use CTFFIND 3. For images from CCDs or direct detectors use CTFFIND 4.Cite this (Culture Collection of Algae at the University of Texas, RRID:SCR_016782)
URL: https://utex.org/
Resource Type: Resource, organization portal, database, biospecimen repository, service resource, portal, storage service resource, data or information resource, material storage repository
The UTEX Culture Collection of Algae includes different strains of living algae, representing most major taxa. Cultures in the Collection are used for research, teaching, biotechnology development, and various other projects throughout the world.Cite this (Darwin Core, RRID:SCR_016778)
Resource Type: Resource, organization portal, service resource, portal, storage service resource, data repository, data or information resource
Natural history collections. Offers a stable, straightforward and flexible framework for biodiversity data. Community-developed biodiversity data standard. It includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing identifiers, labels, and definitions. Darwin Core is primarily based on taxa, their occurrence in nature as documented by observations, specimens, samples, and related information.Cite this (FibrilTool, RRID:SCR_016773)
URL: https://biii.eu/fibriltool
Resource Type: Resource, image analysis software, data analysis software, data processing software, software application, data analytics software, software resource
ImageJ plug-in to quantify fibrillar structures in raw microscopy images. Used to evaluate the orientation of fiber orientation pattern and plots the results in the image.Cite this (Frealign, RRID:SCR_016733)
URL: http://grigoriefflab.janelia.org/frealign
Resource Type: Resource, software resource, software application, image processing software, data processing software
Software tool for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles. Used to process electron microscope images of single molecules and complexes to obtain reconstructions at the highest possible resolution.Cite this (HCS Studio Cell Analysis software, RRID:SCR_016787)
Resource Type: Resource, image analysis software, data analysis software, data processing software, software application, data management software, data visualization software, software resource, software toolkit, image processing software
Software packages for quantitative cell analysis. Used in image cytometry, quantitative cell analysis or automated cell analysis in biological research and drug discovery.Cite this (Leginon, RRID:SCR_016731)
URL: http://emg.nysbc.org/redmine/projects/leginon/wiki/Leginon_Homepage
Resource Type: Resource, data repository, data processing software, software application, service resource, portal, storage service resource, software resource, data acquisition software, data or information resource, image acquisition software
System designed for automated collection of images from a transmission electron microscope.Cite this (mirDIP, RRID:SCR_016770)
URL: http://ophid.utoronto.ca/mirDIP/
Resource Type: Resource, data or information resource, portal, database
microRNA data integration portal to find microRNAs that target a gene, or genes targeted by a microRNA, in Homo sapiens. Software to integrate prediction databases to elucidate accurate microRNA:target relationships. Used for human microRNA prediction studies.Cite this (NamesForLife, RRID:SCR_016776)
URL: https://www.namesforlife.com/
Resource Type: Organization
Privately held Michigan based software company. They provide taxonomic and analytical services, data, software and technology licensing for the academic publishing industry, life sciences research, commercial partners and federal laboratories.Cite this (National Plant Germplasm System (NPGS), RRID:SCR_016785)
URL: https://www.ars-grin.gov/npgs/
Resource Type: Organization, organization portal, portal, data or information resource
Cooperative effort by U.S. state and federal government and private organizations to preserve the genetic diversity of plants. The NPGS aids scientists and the need for genetic diversity by acquiring, preserving, evaluating, documenting and distributing crop germplasm. The NPGS is managed by the Agricultural Research Service (ARS), the in-house research agency of the United States Department of Agriculture (USDA). Funding for the NPGS comes primarily through appropriations from the U.S. Congress.Cite this (NEUBIAS, RRID:SCR_016775)
URL: https://france-bioimaging.org/tag/neubias/
Resource Type: Resource, organization portal, portal, consortium, data or information resource
Network of European BioImage Analysts to advance life science imaging and to boost the productivity of bioimaging based research projects in Europe.Cite this (Neurolucida 360, RRID:SCR_016788)
URL: https://www.mbfbioscience.com/neurolucida360
Resource Type: Resource, software resource, software application, data analysis software, data processing software
Software for automatic neuron 3D reconstruction and analysis. Used by neuroscientists to reconstruct intricate neuronal structures that range in scale from complex, multicellular networks of neurons to sub-cellular dendritic spines and putative synapses.Cite this (NZYTech, RRID:SCR_016772)
Resource Type: Organization, analysis service resource, biomaterial supply resource, service resource, material resource, production service resource
Commercially provides services and products for research in the fields of molecular biology, diagnostics, enzymes and proteins.Cite this (OptiQuant Software, RRID:SCR_016769)
Resource Type: Resource, image analysis software, data analysis software, data processing software, software application, software resource, data acquisition software, image acquisition software
Software package for image acquisition, analysis, display, and archiving. Used to quantify theCite this (Phaff Yeast Culture Collection, RRID:SCR_016781)
URL: http://phaffcollection.ucdavis.edu/
Resource Type: Resource, service resource, organization portal, data or information resource, portal, database
Collection of wild yeast in the world. Academic and industrial resarchers utilize this collection for a variety of research and applications, including pigments, enzymes, food ingredients, and hosts for protein expression. Provides contract screening and strain selection services.Cite this (Plant Cell Culture Library (PCCL), RRID:SCR_016784)
URL: https://www.umass.edu/ials/pccl-database
Resource Type: Resource, data or information resource, database
Collection of plant species for use by both academia and industry.The PCCL enables R&D exploitation of monocot, dicot and gymnosperm cultures.Cite this (Social Science Statistics, RRID:SCR_016762)
URL: https://www.socscistatistics.com/
Resource Type: Resource, data analysis service, data analysis software, data processing software, data access protocol, production service resource, web service, software application, analysis service resource, service resource, software resource
Web site for resources (statistical calculators, p-value calculators, descriptive statistics) for students and researchers working with statistics in the social sciences. All the calculators and tools have been designed with ease of use.Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
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