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on page 1 showing 20 out of 22 results

Cite this (Appion Package, RRID:SCR_016734)

URL: http://emg.nysbc.org/redmine/projects/appion/wiki/Appion_Home

Resource Type: Resource, software resource, software application, image processing software, data processing software, image analysis software

Software package for processing and analysis of EM images. Appion is integrated with Leginon data acquisition but can also be used stand-alone after uploading images (either digital or scanned micrographs) or particle stacks using a set of provided tools.

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    BISE

Cite this (BISE, RRID:SCR_016774)

URL: https://biii.eu/

Resource Type: Resource, organization portal, database, analysis service resource, production service resource, service resource, portal, software resource, data or information resource

Web platform for bio image analysis. Used to share knowledge between the different communities, to help biologists to find any tool or workflow available for a particular image analysis problem and to find the adequate image processing wording, to help software and algorithm developers to find missing tools (or components), and to help bioimage analyst to identify and edit workflows.

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    Chemdraw

Cite this (Chemdraw, RRID:SCR_016768)

URL: http://www.perkinelmer.co.uk/category/chemdraw

Resource Type: Resource, software resource, software application

Software used to draw chemical structure. ChemDraw, along with Chem3D and ChemFinder, is part of the ChemOffice suite of programs and is available for Macintosh and Microsoft Windows.

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    CTFFIND

Cite this (CTFFIND, RRID:SCR_016732)

URL: http://grigoriefflab.janelia.org/ctffind4

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software tool for finding CTFs of electron micrographs. Program used for the estimation of objective lens defocus parameters from transmission electron micrographs. The program CTFFIND3 is an updated version of the program CTFFIND2. For micrographs collected on photographic film and scanned in use CTFFIND 3. For images from CCDs or direct detectors use CTFFIND 4.

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Cite this (Culture Collection of Algae at the University of Texas, RRID:SCR_016782)

URL: https://utex.org/

Resource Type: Resource, organization portal, database, biospecimen repository, service resource, portal, storage service resource, data or information resource, material storage repository

The UTEX Culture Collection of Algae includes different strains of living algae, representing most major taxa. Cultures in the Collection are used for research, teaching, biotechnology development, and various other projects throughout the world.

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Cite this (Darwin Core, RRID:SCR_016778)

URL: https://dwc.tdwg.org/

Resource Type: Resource, organization portal, service resource, portal, storage service resource, data repository, data or information resource

Natural history collections. Offers a stable, straightforward and flexible framework for biodiversity data. Community-developed biodiversity data standard. It includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing identifiers, labels, and definitions. Darwin Core is primarily based on taxa, their occurrence in nature as documented by observations, specimens, samples, and related information.

  • From Current Category

Cite this (FibrilTool, RRID:SCR_016773)

URL: https://biii.eu/fibriltool

Resource Type: Resource, image analysis software, data analysis software, data processing software, software application, data analytics software, software resource

ImageJ plug-in to quantify fibrillar structures in raw microscopy images. Used to evaluate the orientation of fiber orientation pattern and plots the results in the image.

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    Frealign

Cite this (Frealign, RRID:SCR_016733)

URL: http://grigoriefflab.janelia.org/frealign

Resource Type: Resource, software resource, software application, image processing software, data processing software

Software tool for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles. Used to process electron microscope images of single molecules and complexes to obtain reconstructions at the highest possible resolution.

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Cite this (HCS Studio Cell Analysis software, RRID:SCR_016787)

URL: https://www.thermofisher.com/us/en/home/life-science/cell-analysis/cellular-imaging/high-content-screening/high-content-screening-instruments/hcs-studio-2.html

Resource Type: Resource, image analysis software, data analysis software, data processing software, software application, data management software, data visualization software, software resource, software toolkit, image processing software

Software packages for quantitative cell analysis. Used in image cytometry, quantitative cell analysis or automated cell analysis in biological research and drug discovery.

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    Leginon

Cite this (Leginon, RRID:SCR_016731)

URL: http://emg.nysbc.org/redmine/projects/leginon/wiki/Leginon_Homepage

Resource Type: Resource, data repository, data processing software, software application, service resource, portal, storage service resource, software resource, data acquisition software, data or information resource, image acquisition software

System designed for automated collection of images from a transmission electron microscope.

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    mirDIP

Cite this (mirDIP, RRID:SCR_016770)

URL: http://ophid.utoronto.ca/mirDIP/

Resource Type: Resource, data or information resource, portal, database

microRNA data integration portal to find microRNAs that target a gene, or genes targeted by a microRNA, in Homo sapiens. Software to integrate prediction databases to elucidate accurate microRNA:target relationships. Used for human microRNA prediction studies.

  • From Current Category

Cite this (NamesForLife, RRID:SCR_016776)

URL: https://www.namesforlife.com/

Resource Type: Organization

Privately held Michigan based software company. They provide taxonomic and analytical services, data, software and technology licensing for the academic publishing industry, life sciences research, commercial partners and federal laboratories.

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Cite this (National Plant Germplasm System (NPGS), RRID:SCR_016785)

URL: https://www.ars-grin.gov/npgs/

Resource Type: Organization, organization portal, portal, data or information resource

Cooperative effort by U.S. state and federal government and private organizations to preserve the genetic diversity of plants. The NPGS aids scientists and the need for genetic diversity by acquiring, preserving, evaluating, documenting and distributing crop germplasm. The NPGS is managed by the Agricultural Research Service (ARS), the in-house research agency of the United States Department of Agriculture (USDA). Funding for the NPGS comes primarily through appropriations from the U.S. Congress.

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    NEUBIAS

Cite this (NEUBIAS, RRID:SCR_016775)

URL: https://france-bioimaging.org/tag/neubias/

Resource Type: Resource, organization portal, portal, consortium, data or information resource

Network of European BioImage Analysts to advance life science imaging and to boost the productivity of bioimaging based research projects in Europe.

  • From Current Category

Cite this (Neurolucida 360, RRID:SCR_016788)

URL: https://www.mbfbioscience.com/neurolucida360

Resource Type: Resource, software resource, software application, data analysis software, data processing software

Software for automatic neuron 3D reconstruction and analysis. Used by neuroscientists to reconstruct intricate neuronal structures that range in scale from complex, multicellular networks of neurons to sub-cellular dendritic spines and putative synapses.

  • From Current Category

    NZYTech

Cite this (NZYTech, RRID:SCR_016772)

URL: https://www.nzytech.com/

Resource Type: Organization, analysis service resource, biomaterial supply resource, service resource, material resource, production service resource

Commercially provides services and products for research in the fields of molecular biology, diagnostics, enzymes and proteins.

  • From Current Category

Cite this (OptiQuant Software, RRID:SCR_016769)

URL: http://www.perkinelmer.co.uk/lab-solutions/resources/PDFs/LST/Specifications/SPC_CyclonePlusStoragePhosphor.pdf

Resource Type: Resource, image analysis software, data analysis software, data processing software, software application, software resource, data acquisition software, image acquisition software

Software package for image acquisition, analysis, display, and archiving. Used to quantify the
autoradiography data from Cyclone apparatus from Perkin Elmer.

  • From Current Category

Cite this (Phaff Yeast Culture Collection, RRID:SCR_016781)

URL: http://phaffcollection.ucdavis.edu/

Resource Type: Resource, service resource, organization portal, data or information resource, portal, database

Collection of wild yeast in the world. Academic and industrial resarchers utilize this collection for a variety of research and applications, including pigments, enzymes, food ingredients, and hosts for protein expression. Provides contract screening and strain selection services.

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Cite this (Plant Cell Culture Library (PCCL), RRID:SCR_016784)

URL: https://www.umass.edu/ials/pccl-database

Resource Type: Resource, data or information resource, database

Collection of plant species for use by both academia and industry.The PCCL enables R&D exploitation of monocot, dicot and gymnosperm cultures.

  • From Current Category

Cite this (Social Science Statistics, RRID:SCR_016762)

URL: https://www.socscistatistics.com/

Resource Type: Resource, data analysis service, data analysis software, data processing software, data access protocol, production service resource, web service, software application, analysis service resource, service resource, software resource

Web site for resources (statistical calculators, p-value calculators, descriptive statistics) for students and researchers working with statistics in the social sciences. All the calculators and tools have been designed with ease of use.

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