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on page 1 showing 20 out of 2,819 results

    3DBar

Cite this (3DBar, RRID:SCR_008896)

URL: http://www.3dbar.org

Resource Type: Resource, production service resource, analysis service resource, reference atlas, software resource, service resource, atlas, data or information resource

Software package for reconstructing three-dimensional models of brain structures from 2-D delineations using a customizable and reproducible workflow. 3dBAR also works as an on-line service (http://service.3dbar.org) offering a variety of functions for the hosted datasets: * downloading reconstructions of desired brain structures in predefined quality levels in various supported formats as well as created using customizable settings, * previewing models as bitmap thumbnails and (for webGL enabled browsers) interactive manipulation (zooming, rotating, etc.) of the structures, * downloading slides from available datasets as SVG drawings. 3dBAR service can also be used by other websites or applications to enhance their functionality. * Operating System: Linux * Programming Language: Python * Supported Data Format: NIfTI-1, Other Format, VRML

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Cite this (3D Genome, RRID:SCR_017525)

URL: http://promoter.bx.psu.edu/hi-c/

Resource Type: Resource, service resource

Genome Browser for study of 3D genome organization and gene regulation and data visualization. Used to visualizing chromatin interaction data, browse other omics data such as ChIP-Seq or RNA-Seq for same genomic region, and gain complete view of both regulatory landscape and 3D genome structure for any given gene.

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Cite this (3D-Interologs, RRID:SCR_003101)

URL: http://gemdock.life.nctu.edu.tw/3D-Interologs

Resource Type: Resource, data analysis service, production service resource, analysis service resource, database, service resource, data or information resource

Database of physical protein-protein interactions across multiple genomes. Based on 3D-domain interolog mapping and a scoring function, protein-protein interactions are inferred by using three-dimensional (3D) structure heterodimers to search the UniProt database. For a query protein, the database utilizes BLAST to identify homologous proteins and the interacting partners from multiple species. Based on the scoring function and structure complexes, it provides the statistic significances, the interacting models (e.g. hydrogen bonds and conserved amino acids), and functional annotations of interacting partners of a query protein. The identification of orthologous proteins of multiple species allows the study of protein-protein evolution, protein functions, and cross-referencing of proteins.

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Cite this (4D Genome, RRID:SCR_017489)

URL: https://4dgenome.research.chop.edu/

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

Repository for chromatin interaction data. Records can be queried by genomic regions, gene names, organism, and detection technology. Database is continuously updated by curators. Contributions from scientific community.

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Cite this (4TU.Datacentrum, RRID:SCR_006295)

URL: http://researchdata.4tu.nl/en/home/

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

Multidisciplinary data repository for a consortium of universities in the Netherlands housing over datasets with a focus on scientific and technical data. Most data were produced by Dutch researchers including datasets from doctoral research. Users can deposit up to 1G by completing an upload form. Collection development foci include applied sciences, biomedical technology, earth sciences, and technology and construction. 4TU.Datacentrum is a collaboration of the libraries of the three leading technical universities - Delft University of Technology, Eindhoven University of Technology and the University of Twente.

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Cite this (AAA Service Laboratory, RRID:SCR_012418)

URL: http://www.scienceexchange.com/facilities/aaa-service-laboratory-inc

Resource Type: Resource, service resource, commercial organization, core facility, access service resource

ABRF member.

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Cite this (Aalto University; Espoo; Finland, RRID:SCR_000947)

URL: http://www.aalto.fi/en/

Resource Type: Resource, service resource, training service resource

The unification of three major universities in Finland - the Helsinki University of Technology, Helsinki School of Economics and the University of Art and Design Helsinki.

  • From Current Category

Cite this (Aarhus University; Aarhus; Denmark, RRID:SCR_000948)

URL: http://www.au.dk/en/

Resource Type: Resource, training resource, graduate program resource, undergraduate program resource, service resource, training service resource, degree granting program

A public university in Denmark that offers degrees at the undergraduate and graduate level in fields such as engineering, nanotechnology, medicine and modern languages.

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Cite this (ABA Mouse Brain: Atlas, RRID:SCR_017479)

URL: http://mouse.brain-map.org/

Resource Type: Resource, service resource, data or information resource, database

Genome wide database of gene expression in mouse brain.

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    Abgent

Cite this (Abgent, RRID:SCR_008393)

URL: http://abgent.com

Resource Type: Resource, antibody supplier, core facility, service resource, access service resource, reagent supplier, material resource

An antibody supplier and core facility.

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    Ablynx

Cite this (Ablynx, RRID:SCR_002940)

URL: http://www.Ablynx.com

Resource Type: Resource, reagent manufacture, service resource, production service resource, material service resource

A biopharmaceutical company engaged in the discovery and development of Nanobodies, a novel class of antibody-derived therapeutic proteins based on single-domain antibody fragments, for a range of serious life-threatening human diseases including inflammation, hematology, oncology and pulmonary disease.

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Cite this (Academia Sinica; Taipei; Taiwan, RRID:SCR_000950)

URL: http://www.sinica.edu.tw/main_e.shtml

Resource Type: Resource, service resource, training service resource

The national academy of Taiwan that supports research activities in a wide variety of disciplines, ranging from mathematical and physical sciences, to life sciences, and to humanities and social sciences. The institution plays a particularly important role in the academic field of Chinese Studies.

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Cite this (Academic Karma, RRID:SCR_014017)

URL: http://academickarma.org

Resource Type: Resource, service resource, production service resource

A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work.

  • From Current Category

Cite this (Academic Seismic Portal at UTIG, RRID:SCR_000403)

URL: http://www.ig.utexas.edu/sdc/

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

Database of processed seismic reflection / refraction data providing access to metadata, SEG-Y files, navigation files, seismic profile images, processing histories and more. The main features of the web site include a geographic search engine using Google Plugins, a metadata search engine, and metadata pages for the various seismic programs. Metadata are uploaded into mySQL, a public-domain SQL server, and then PHP scripts query the metadata and directories, creating web pages, displaying images, and providing ftp links. The minimum requirements for data submission are: * unrestricted access to the navigation and small raster image (about 300 x 600 pixels) * file format is SEG-Y (they can help with this) * information relating geographic location to the traces in the file (this is often a big part of what they create) They also need basic descriptive information (metadata) about acquisition, navigation geometry, processing sequence and provenance (and pass some of our consistency tests). The submitted metadata is naturally highly variable but could include cruise reports, processing reports, important citations, etc.

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Cite this (ACADIS Gateway, RRID:SCR_010473)

URL: http://www.aoncadis.org

Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database

A repository and data management services for Arctic research data. Data include long-term observational timeseries, local, regional, and system-scale research from many diverse domains.

  • From Current Category

Cite this (Accelerated Cure Project MS Repository, RRID:SCR_004208)

URL: http://www.acceleratedcure.org/impact/repository

Resource Type: Resource, biomaterial supply resource, biospecimen repository, image collection, service resource, storage service resource, data or information resource, material resource, material storage repository

A repository of biological samples and data from people with multiple sclerosis, selected other demyelinating diseases, and unaffected controls. The repository not only provides much-needed samples and data to researchers studying MS and other diseases, but also aggregates the results from all of these studies so that they can be analyzed collectively, leading to new findings and breakthroughs. The repository collects blood, DNA, and imaging once per year. The repository currently includes samples and data from over 2,700 subjects with Multiple Sclerosis, Neuromyelitis Optica, Acute Disseminated Encephalomyelitis, Transverse Myelitis, Optic Neuritis, and Clinically Isolated Syndromes, as well as controls. Blood samples are provided as aliquots as serum, plasma, DNA, RNA, and lymphocytes and each sample is accompanied by more than 40 pages of clinical and epidemiological data contributed by the subject and the enrolling neurologist.

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Cite this (Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal, RRID:SCR_003743)

URL: http://www.type2diabetesgenetics.org/

Resource Type: Resource, disease-related portal, topical portal, database, service resource, portal, storage service resource, data repository, data or information resource

Portal and database of DNA sequence, functional and epigenomic information, and clinical data from studies on type 2 diabetes and analytic tools to analyze these data. .Provides data and tools to promote understanding and treatment of type 2 diabetes and its complications. Used for identifying genetic biomarkers correlated to Type 2 diabetes and development of novel drugs for this disease.

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    AceDB

Cite this (AceDB, RRID:SCR_010671)

URL: http://www.acedb.org/

Resource Type: Resource, service resource, software resource, data or information resource, database

AceDB is a genome database designed specifically for handling bioinformatic data flexibly. It includes tools designed to manipulate genomic data, but is increasingly also used for non-biological data. This genome database system developed since 1989 primarily by Jean Thierry-Mieg (CNRS, Montpellier) and Richard Durbin (Sanger Institute), provides a custom database kernel, with a non-standard data model designed specifically for handling scientific data flexibly, and a graphical user interface with many specific displays and tools for genomic data. AceDB is used both for managing data within genome projects, and for making genomic data available to the wider scientific community. AceDB was originally developed for the C.elegans genome project , from which its name was derived (A C. elegans DataBase). However, the tools in it have been generalized to be much more flexible and the same software is now used for many different genomic databases from bacteria to fungi to plants to man. It is also increasingly used for databases with non-biological content. The AceDB software is primarily developed to run under the Unix operating system, using X-Windows for graphics, with a local copy of the database files. There is also a version of AceDB for Microsoft Windows which, likewise, runs with a local copy of the database. AceDB databases can be accessed via the Web, using the AceBrowser system, which serves a local installation of the C. elegans Genome Database. There are several APIs for AceDB, allowing you to call it as a library from several programming languages. Interfaces to Perl, Java and CORBA are already available.

  • From Current Category

Cite this (ACGT Inc., RRID:SCR_001026)

URL: http://www.acgtinc.com

Resource Type: Resource, analysis service resource, service resource, production service resource

Company which provides a suite of molecular biology and genomic services, including DNA sequencing by Sanger and Next Generation Sequencing. All services are offered at a research, GLP or clinical grade levels.

  • From Current Category

Cite this (Acromine Disambiguator, RRID:SCR_006923)

URL: http://www.nactem.ac.uk/software/acromine_disambiguation/

Resource Type: Resource, web service, software resource, service resource, data access protocol

Service that disambiguates acronyms from Medline in text through your browsers; or use the RESTful Service for integrating it with your applications. Reference: Okazaki, N., Ananiadou, S. and Tsujii, J. (2010). Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation.Bioinformatics, Oxford University Press.

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